Bombus affinis (rusty patched bumble bee): 126916746
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Entry
126916746 CDS
T09368
Name
(RefSeq) exosome complex component RRP45
KO
K03678
exosome complex component RRP45
Organism
baff
Bombus affinis (rusty patched bumble bee)
Pathway
baff03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
baff00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
126916746
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
baff03019
]
126916746
Messenger RNA biogenesis [BR:
baff03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
126916746
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
126916746
NCBI-ProteinID:
XP_050578800
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Position
5:complement(9539876..9542482)
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AA seq
410 aa
AA seq
DB search
MKEVLLTNCEKNFINKSVEQGTRLDGRCLFEARPAKIYFASNWGSCMVLLGQTRVIAQVT
CDIQQPKTSRPNEGMLHINVELNPMAAQHFDGGRQSEISILISRQLEKCYQDSKCIDLES
LCIIADKQVWNLRVDVNVINHDGNLIDCASIATLAALSHFHRPDVTSNGEDIIVHPFSEK
DPLPLTLYHYPVCVSFITFESGSTVMDPTYLEERVGVAQLTLGINSYRELCSLHFNYLTK
TMTVEDVISAVSNYAANYAVQLVQQIKEAVNYDVETRYKKDNRNVNRFKECIMTKKLTTM
NSECISIKLRKWGEIEKIESNVDIEKEKEDENCTIIKPGEGSAELISNTSMSFGEGGPNT
WNSSESSEEEINDVEITAEIKKEENKIEDIELSGDSEEETIEMLEIKDLM
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaagttttgctaacgaattgtgaaaagaactttataaataaatcagtggaacaa
ggcacacgattggatggcagatgtttatttgaagcacgacctgctaaaatttattttgca
tccaattggggtagttgtatggttttgcttggtcaaactagagttatagcacaagtaaca
tgtgatattcagcaacctaagacttctcgtcctaatgaagggatgctacatataaatgtt
gaacttaatccaatggctgcacagcattttgatggtggtagacaatctgagatttcaata
ttgattagcagacaacttgaaaaatgttatcaagattccaaatgtatagatttagaatct
ttatgtatcatagctgataaacaagtgtggaatttaagggttgatgttaacgttattaat
cacgatggaaatttaatcgattgtgcttccattgcaacattagctgctctctcacatttt
cataggcctgatgtaacttcaaatggtgaagatattatagttcatccattttctgaaaaa
gaccctttacctttaacattatatcattatccagtgtgtgtctcttttataacatttgaa
agtggaagtacagttatggatccaacatatttagaagaaagagttggtgtagctcaactt
actcttggtattaattcatatagagaactttgtagtttgcattttaattatttgacaaaa
actatgactgttgaagacgtgatatcagcagtttctaattatgcagcaaattatgctgtt
caattagtgcaacaaataaaagaagcagtaaattatgatgtagaaacaaggtacaagaaa
gataatcgtaatgtaaatcgttttaaagagtgcataatgacaaagaagttgacaactatg
aatagtgaatgtatcagtattaaactgcgtaaatggggtgagatagaaaaaatagaatct
aatgttgacatagagaaagagaaagaagatgaaaattgtacgattataaagcctggagaa
ggttctgctgagttaatatcaaatacaagtatgtcatttggcgaaggtggacctaataca
tggaattcatcagaatcctcagaagaagaaataaacgatgttgaaattactgcggagata
aagaaagaagaaaataaaatagaagatatagaattaagtggagacagtgaagaagaaact
atcgaaatgttagaaataaaggatttaatgtaa
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