Bombus affinis (rusty patched bumble bee): 126916970
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Entry
126916970 CDS
T09368
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
baff
Bombus affinis (rusty patched bumble bee)
Pathway
baff03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
baff00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
126916970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
baff03019
]
126916970
Messenger RNA biogenesis [BR:
baff03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
126916970
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
126916970
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
HTH_upst_double_PIN
Motif
Other DBs
NCBI-GeneID:
126916970
NCBI-ProteinID:
XP_050579299
LinkDB
All DBs
Position
1:complement(11579472..11589196)
Genome browser
AA seq
2402 aa
AA seq
DB search
MNLDSLSFTLSQISYLVTNLNKKNFRDSCQEISVLVQWKGLEADRHLLRSLLSCIDFSTG
ESPELSARDYFQVQLLKQECTNLLSKPSFISNLCFAIDHPFHQQKTLNPSPKFFLRLKKA
LGLTLVQEVAFAIALLHSENTEIRTLALEHVQKQLPELIKNYINSETSNRHHEEGLHDSL
PEVLHLILSQAFHSANQFGLSSEAKEKFLKNLRRDFPRELVPVVLAPLLYPDNGETPQTK
IELNMAVNQMDGNSLVELIMELGYGFTNSVEECRSALAGLGAREISPTCAARVLGHMARS
CSNLDDAGGLQSFWGNSGATQDANKEKSSDNAAPTTWNVEIFVQALKEIQSTLSWNEVIV
KLDHAEFVIKDRQGLNLLITGLRLGLQHQGYPPDMFPVELFYRHWDNIEGQFSLVQQILK
CPDIFCFADYPYHSVTVDVLKAAPESDSKEAQTWRSLNVVELLLHMAERGLYGPVQEIFK
WPIQHCPDVLVLALLQISAPVTILRQELLSTLMPIFLGNHPNSAVILHHAWHGNTVKIKS
IIMHAMAEWYIRGDHDQTRLSRILDVAQDLKALTHLLTAQSYPFVIDLACLASRREYLKL
EKWLTDKIREQGEVFVTACVKFLQRRCPQVMGPGIKEDLTVPKASQLPQETLTTMLACLQ
VCAGSVSQECSEAIMTMVQNCSLMLSKSTMSRPPPPGVLRHRGLEPFNPATLGGQLFSSK
QVDPLGNLSSSLASMGLGSSLGPPSSSAFNLSGALGPLVSAPGSPSRLMGPSPSPFPMLP
LSSQLHSGPVGTQGPSVLPGNTTIGGLGRLVPPTGIEKARIPETSNLFPDMAQNVSKEIE
DEANSYFQRIYNHPPHPTLSIDEVLDMLKKFQESGSKREREVFNCMLRNLFEEYRFFPQY
PDKELQITAQLFGGIIERGLINSYMTLGLALRFVLDALRKPEGSKMYYFGITALDRFKIR
LKDYQTYCEHVRTIQHFSEFPQHLIEYIEYGLQGQEPPVRPQGSILPKSLAAMLAPVTTP
YKTITTTTITTSTTQAKSSTTPTTSLSARPSIANATNIDTLLVATDKEEKITTPPEALQD
KTAFIFNNLSQLNLQQKCDEIREIVTEEYWPWMAQYLVMKRASIELNFHALYSNFLDCLK
LPEVYKMVTRETFRNIKVLLRSDKGIANFSDRSLLKNLGHWLGMLTLGRNKPILHIDIDL
KSLLVEAYHKGQQELLYVVPFVAKVLESCAKSRVFRPPNPWTMAIMNVLAELHQEPDLKL
NLKFEIEVLCKNLSIDVGELKPALYLKDPEKLRNLEYQLSHPNKKSESNNNQQQTQGPIE
ELVGPTTTGTIVPQTAPANTTPSLPTGPPEPRFNYMDISVTGIANISQHITINNNLPLFQ
THPHLKQFVRPAVERAIQEWIHPVVDRSIKIALTTSEQIVRKDFALDPEEVRMRTAARHM
VRNLTAGMAMITCRDQVLTSISTNLKQAFLTAMIGTTPQQKELAEQAANVVAADNMELAC
AFVQKTAIEKAIPEMDKRLLNEIELRKIARQEGRRYCDPLLKYQAERMPEQIRLKVGGVT
PQQMAVYEEFARNIPGFLPLSERDTQALLMPKPVTEPTVTAFAANPAVAVATAQQVAAYA
AAVSNDEVGAMLEKLAAEVEVLLAAMGPVAPPPQHATLHSLLDSIILTRRSRDAGAAMTL
LKKAVEGLLDGPTITSGVIDSEIILRYRELHLRILKCLQDPRAYGMQWTNKHITRCLTEC
REEFRYNFEAVDYLIRSHLISLPQYDLALAQAIDSGNSMATAFAMQLVQLYLIDERQTTH
VAESDLFHTIEILARIAHHRAPPEGILLFRLTNLIESLRVNHDTGVLADRAPAGPTAHIH
SGILQVRARDFDDPPGLMEKTEYLLREWISMHHNPTHARDPTKAFGMFVHQMNIHGILKT
DDLITRFFKLSTQMCVDSCYRALADTSAAIPVVRAKCFHSLDAFVRLIALLVKHSGDSTN
THTKINLLNKVLGIVAGVLLQDQEMRGTDFQQLPYHRIFIMLFLELCAPEPVLEAINYQV
LTAFCHTLHILRPAKASGFCYAWLDIVAHRVFIGRTLAITPQQKCWGMYAQLLIDLFKYL
ASYLRNTELAKPVLTLYRGTIRVLLVLLHDFPEFLCEYHYGFCDVIPLNCTQMKNIVLSA
YPRSMRLPDPFTPNLTVNLLQQATHTPRILTNFASMIQPLSFKKELDSYLKARAPVTFLS
ELRSNLQVSQDTGFRYNIPLMNALVLYVGTQAISFIRSKGHTPNMSAIAHSAHMDIFQNL
AVDLDTEGRYLFINAIMNQLRYPNTHTNYFSCTLLYLFVEANTQAIQEQITRVILERLVV
NRPHPWGLLVTFVELIKNPTYKFWTHEFVHCAPEIEKLFDSIAHSCRNLKDLESIREPNI
PE
NT seq
7209 nt
NT seq
+upstream
nt +downstream
nt
atgaacctggactcgttgtcttttactttgtcacaaatcagttatttggttacgaattta
aataagaaaaattttcgagacagctgccaagaaatatcagttctggtgcagtggaagggt
ttggaggcagacagacatttgctgcgctctttactctcgtgcattgacttttccacagga
gagtcaccagaattaagtgcgagagattactttcaagtgcaacttctaaaacaagagtgt
actaatcttcttagcaaaccttcttttatttctaatctgtgctttgctatagatcatcca
tttcatcaacaaaagactttgaacccatcaccaaagttttttttacgtttaaaaaaggca
cttgggttaactctggtacaagaagttgcatttgcgattgcattgctccattctgagaat
actgaaattcgtacattagctctagagcacgtacaaaaacagctgcctgaattgataaaa
aattatattaattctgaaacaagcaacagacatcacgaagaaggattgcacgattcattg
cctgaagttcttcatcttatattgtctcaagcttttcattcagccaatcaatttggcctt
tcatctgaagcaaaagaaaaatttctcaagaatttgaggcgcgattttccccgtgagctg
gtaccagtggtgctagcaccactcttgtacccagacaacggggaaactccgcaaaccaaa
atcgagctaaacatggctgttaatcaaatggatgggaattctctagtagaattgattatg
gaattaggatatggattcactaacagtgttgaagaatgtcgatcagccttagctggttta
ggggctcgagaaatatctccaacatgcgcagcaagggttttaggtcatatggcacgtagc
tgtagtaatcttgatgatgctggaggattacaatcattttggggtaattcaggagctaca
caagatgcaaataaggaaaaatcaagtgataatgctgctcctactacatggaatgttgaa
atttttgttcaagctttaaaagaaattcaatcaacattatcttggaatgaagtgatagtt
aaactagatcatgcagaatttgttatcaaagatagacaaggattgaatttgttgatcaca
ggattaaggttgggattgcaacatcaaggatatcctccagatatgtttcccgtggaactt
ttttatcgtcattgggataacatagaaggacagttttctctagtgcaacaaattttaaag
tgccctgatatattttgttttgccgattatccatatcattctgtaactgttgatgtattg
aaagcagcaccagagagtgacagtaaagaagcacaaacttggagatccttaaatgtagtt
gaattactcttgcatatggcagaaagaggactgtatggaccagttcaagaaatatttaag
tggcccattcaacactgccctgatgttcttgtattagcattattacaaattagtgctcct
gttacaatacttagacaagaattacttagtacattaatgcctatttttcttgggaatcat
ccaaattcagctgttattctacatcatgcatggcatggaaatacagttaaaataaaatct
attattatgcatgctatggcagaatggtatatacgtggagatcacgatcaaacaagacta
tctcgtattcttgatgttgctcaagacctcaaagcattaactcatttattgactgctcaa
tcatatccatttgttattgatctagcctgtttggcttcaagaagagaatatttaaaatta
gaaaaatggttgactgataaaattagagaacaaggagaagtttttgttactgcttgtgta
aagtttttacaaagacgttgtcctcaagtaatgggacctggtataaaggaagatcttaca
gtaccaaaagcaagtcaacttccacaagaaacactaacaacaatgcttgcttgtttgcaa
gtatgcgctggaagtgtatctcaagaatgttccgaggcaataatgacaatggtacaaaat
tgtagtctaatgttgagtaaaagtacaatgagtagacctccaccaccaggagttttacga
catcgtggattggaaccttttaatccagcaactttgggaggacagttgttttcttcaaaa
caagtggatccgcttggaaatttaagttcaagtcttgcatctatgggtttgggttccagt
cttggtccaccaagtagttctgcgtttaatttatcaggtgcacttggacctttagtatca
gcacctggctctccttctcgtctcatgggaccttctccaagtccatttccgatgttacca
ttatcttcacaattgcattcaggaccagttggtacgcaaggaccatctgttttacctgga
aatacgacaatcggaggattaggacgacttgtaccaccaacaggcattgaaaaagcaaga
atacctgaaacatcgaacttatttcctgatatggcacaaaatgtttccaaagaaattgaa
gatgaagcaaacagttactttcagcgaatatacaaccatccgccacatcctaccttatca
attgatgaagttcttgatatgttaaaaaaatttcaagagtctggtagtaaaagagagaga
gaagtattcaactgtatgttacgaaacttatttgaggaatatcgattttttcctcaatac
ccagataaagagttgcaaattacggcacagttattcggaggaattattgaaagaggattg
attaatagctatatgacacttggattagctctgagatttgtattggatgcacttaggaaa
ccagaaggcagcaagatgtattactttggcataacagctctggatcggttcaaaatccgt
ttaaaagactaccaaacatactgtgagcatgtcaggacaattcaacatttcagtgagttt
ccacaacatttaattgagtatatagaatatggattacaggggcaggagcctcccgtaaga
cctcaaggttcaatcctcccaaaatctttagcagctatgctggcaccagttactacacca
tataaaactattacgacaacaacaataacgacaagcactactcaagcgaaatcatccacg
actccaaccacctctctctcagccagaccttctattgctaatgcaacaaacattgatacg
ttattagtagcaaccgataaagaagaaaagataacgacacctccagaagctttgcaagat
aaaacagcattcatcttcaataatcttagtcaacttaatttacaacaaaaatgtgacgaa
attcgagaaattgtcacagaagagtattggccttggatggctcagtatttagtaatgaaa
cgtgcaagcatagaattaaatttccatgctttatattcaaattttctggactgtttgaaa
ttaccagaagtatacaaaatggttactagagaaacatttagaaacataaaggttttatta
cggagtgataaaggaatagcgaatttttctgaccgctcacttttaaaaaatttaggtcat
tggctaggaatgttaactcttggcagaaataaaccgattttacacattgatatagatcta
aaaagtttacttgtcgaagcatatcataaaggtcaacaagaacttctttatgtcgttcca
tttgttgctaaagtacttgaaagttgtgcaaaaagtcgtgtttttcgtccacctaatcct
tggacaatggcaattatgaatgtattagcagaattacatcaagaacctgacctaaaattg
aatttaaaattcgagatagaagtattatgcaaaaatttaagcattgatgtaggtgaatta
aaacctgcgctttacttaaaagatccagaaaaattacggaacttagaatatcaactatca
catcctaataaaaagtctgaatcaaacaacaatcagcaacaaacacaaggccctatcgaa
gaattggttggccccactacaaccggaactattgttccacaaacagctccagcaaataca
acaccatctttacctactggtccaccagagccgcgttttaattatatggatatttctgta
acagggattgctaatatttctcaacatatcaccattaataataatttgccattattccaa
acgcacccacatttgaaacagtttgttcgtccagctgttgaaagagcaattcaagaatgg
attcatcctgtagttgatcgatcgatcaaaatagctctaaccactagcgaacaaattgtg
agaaaagactttgcattagatccagaagaagttcgaatgagaacagcagcaagacatatg
gttcgtaatttaactgctggaatggctatgattacttgccgtgatcaagttttgacgtca
attagtacaaatttaaaacaagcttttttaactgcaatgattggcacaaccccacaacaa
aaagaacttgcagaacaagcagctaatgtagtagctgctgataatatggaacttgcttgc
gcatttgtacaaaaaacagctattgaaaaggcaattccagaaatggataaacgtttattg
aatgaaattgaattacgaaaaattgcacggcaagaaggaagaagatattgcgatccatta
cttaaatatcaagctgagagaatgcctgaacaaataagactaaaagttggcggagtgacg
cctcaacaaatggctgtttatgaagaatttgcgaggaatattccaggattcttaccacta
tctgaacgagacacacaagctttgttaatgccaaaacctgttacagaacctactgtaact
gcatttgctgctaatccagcagttgcagtagcgacggcgcaacaagttgctgcatatgca
gcagccgtgagtaacgatgaagttggagctatgttagagaaacttgcagctgaagttgaa
gtattacttgctgcaatgggtccagttgcaccacctccacaacatgctactcttcacagt
ctcttagattctattatcctaacacgaagatcaagagatgcaggcgctgctatgacatta
cttaaaaaagctgtagaaggtttattagatggccctaccattaccagcggtgtaatagat
tcagaaattatattgcgatatagagaacttcatttacgtattttaaaatgtttacaagat
ccacgtgcctatggcatgcaatggacaaacaaacacattactcggtgtttaactgagtgt
cgagaagagtttcgatacaacttcgaagctgtcgattatcttatcaggtctcatttaatt
agtcttccacagtatgatttagctttagctcaagctatagattctggaaattctatggca
acagcatttgctatgcaattggtgcaactttatttaattgatgaaagacaaactacacat
gttgccgaatctgacctatttcacacaattgaaatacttgcccgaatagctcaccacaga
gcaccacctgaaggaattttactgtttagactgacaaatctgatagaatcattacgcgta
aatcatgatacaggagtattagcagacagagctcctgctggccctacagcgcatattcat
tctggaattctacaggtgagagctcgtgactttgacgatccacctggattgatggaaaag
acggaatatttattacgcgaatggatctcaatgcatcataatccaacgcacgctcgtgat
cccacgaaagctttcggaatgtttgttcatcaaatgaacattcatggaatccttaaaaca
gacgatctcataacaagattctttaaattgagtactcagatgtgtgtcgattcgtgttat
cgtgctttagctgatacaagtgctgcaatacctgttgttcgtgcgaaatgtttccattcg
ttggatgctttcgttcgtttgatcgcacttctggtaaaacattctggtgatagcacaaac
actcatacgaaaattaatttactaaacaaggttttgggaatcgttgctggtgtattacta
caggatcaggaaatgcgaggaactgattttcaacaattgccgtatcatagaattttcatc
atgcttttcttggaactttgcgcccctgaacctgtattggaagcaataaattatcaagta
ttaactgctttctgccatacgctacatatacttagaccagccaaagcttcaggattttgt
tacgcttggctggatatagttgcacacagagtttttattggacgtacgcttgcgattaca
ccacaacaaaaatgttggggcatgtatgcgcaacttttaattgatctctttaagtacctt
gcatcataccttcgaaacacggaacttgcaaagcctgttcttacgttatacagaggaaca
attagagtactattagtcttattacacgattttcctgaatttctttgtgaatatcattac
ggattttgtgatgtaattccacttaattgcacacagatgaaaaatattgttttaagcgca
tatccaagaagtatgcggttacctgatccattcacaccgaatttaacagttaatctgctg
cagcaagcaacacatactccccgaatattgacaaattttgcatctatgatacagccatta
agtttcaaaaaagaacttgattcgtatttaaaagcgcgagctccagttactttcctttct
gaattgcgtagtaatttacaagtgtctcaagatactggttttcgctataatattccatta
atgaacgctctcgtactttatgttgggacacaagctatatcttttattcgcagtaaagga
catacgcctaacatgtctgctatcgcacattctgcacatatggatatatttcaaaacttg
gcagtggatcttgatacagaaggtcgttatttattcataaatgcaattatgaatcagttg
cggtatcctaacacccatacgaattacttcagttgtacacttctgtacttgtttgttgaa
gctaatacgcaagcgatacaagaacaaattacaagagttattcttgaaagacttgttgta
aatagacctcacccatggggtcttctcgttacttttgttgaacttatcaaaaatccaaca
tacaaattctggacgcatgaatttgttcactgtgcaccagaaattgaaaagttattcgat
tcaatagctcattcgtgtaggaacctaaaagatttagaatccattcgggaaccgaatatc
ccagagtga
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