Bacillus velezensis NAU-B3: BAPNAU_2071
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Entry
BAPNAU_2071 CDS
T02859
Symbol
ymdA
Name
(GenBank) phosphodiesterase
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
bamb
Bacillus velezensis NAU-B3
Pathway
bamb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bamb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BAPNAU_2071 (ymdA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bamb03019
]
BAPNAU_2071 (ymdA)
Messenger RNA biogenesis [BR:
bamb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BAPNAU_2071 (ymdA)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_PNO1_2nd
KH_KhpA-B
KH_2
KH_NusA_2nd
Motif
Other DBs
NCBI-ProteinID:
CDH95851
LinkDB
All DBs
Position
complement(2244667..2246226)
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AA seq
519 aa
AA seq
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MTPMTVLISILLTLLGLVVGYYVRKTIAEAKIAGARGAAEQILEDAKRDAEALKKEALLE
AKDEIHTLRIDAEQEVRERRNELQKQENRLLQKEENLDRKHEGIDKREAMLEKKDHSLNE
RQQHIEEMESKVDEMIRMQQSELERISSLTRDEAKQIILDRVENELSHDIAIMTKETENR
AKEEADKKAKNILSLALQRCAADHVAETTVSVVNLPNDEMKGRIIGREGRNIRTLETLTG
IDLIIDDTPEAVILSGFDPIRRETARIALDKLVQDGRIHPARIEEMVEKSRREVDDYIRE
MGEQTTFEVGVHGLHPDLIKILGRLKFRTSYGQNVLKHSMEVAFLAGLMASELGEDAKLA
KRAGLLHDIGKAIDHEVEGSHVEIGVELATKYKEHPVVINSIASHHGDEEPTSIIAVLVA
AADALSAARPGARSETLENYIRRLEKLEEISESYEGVEKSFAIQAGREVRIMVKPDSIND
LEAHRLARDIRKRIEDELDYPGHIKVTVIRETRAVEYAK
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atgaccccaatgacggttctcatctccattttgctgactctgctcggtttagttgttggc
tactatgttcgtaaaaccattgccgaagcaaagattgcgggcgcacgcggtgctgccgag
caaatccttgaagatgcaaagcgtgatgctgaagcactgaaaaaagaagctctgcttgaa
gcaaaggacgaaatccatacacttcgaatagatgctgaacaggaagttcgtgaaagacga
aatgagcttcaaaaacaagaaaaccgtttacttcaaaaagaagaaaatcttgaccgtaaa
catgaaggaattgataaacgggaagcgatgttggagaagaaagatcattctctgaatgaa
cgacaacaacatattgaagagatggaaagcaaagtggatgagatgattcgtatgcagcag
tcagaactcgaacgcatttcgagcctgacacgggatgaagcgaaacaaatcattcttgac
cgggttgaaaatgagctttcacatgacatcgccatcatgacaaaagaaaccgaaaaccgt
gcgaaagaagaggcagataaaaaggcgaaaaacattctgtcgcttgctttgcagcgctgt
gcagcagatcatgttgccgaaacgacggtatcggtcgtcaatcttccgaatgatgagatg
aaaggacgtatcatcggccgtgaagggcgtaacattcgtacgcttgaaacgcttacaggt
attgacctgattattgatgacacacctgaagcagtcattctttccggatttgatccgatc
agacgggagacggcaagaatcgctcttgataaactcgttcaggatggccgtattcacccg
gcgcgcattgaagaaatggttgaaaaatcccgccgtgaggttgatgactatatccgggaa
atgggtgagcagacgacgtttgaagtcggcgttcacggactccacccggatctgatcaag
atcctcggccggttgaaattccgtacaagctacgggcagaacgtactgaaacattctatg
gaagttgcgtttttagccggtttaatggcttccgagcttggagaagatgcaaagcttgcc
aagcgggccggtcttctgcatgacatcggaaaagcaattgaccatgaagtggaaggaagc
cacgtggaaatcggagtggagcttgcgaccaaatataaagagcatccagtcgtcattaac
agtattgcgtcacaccacggagacgaagagccgacttccattatcgccgttctggtcgct
gccgctgatgcactgtcagccgcaagaccgggcgcgagaagtgaaacgctcgaaaactat
atccgcagacttgaaaagcttgaagaaatctccgagtcttacgaaggtgttgaaaaatca
tttgcgattcaggccggccgtgaagttcgcatcatggtgaagccggactccattaatgat
ttagaagcccatcgtttggcacgtgatatccgtaaacgaattgaggacgagcttgattat
ccgggccacattaaagtgaccgtaatcagagaaactcgagccgtagagtatgcaaaataa
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