Bacillus amyloliquefaciens IT-45: KSO_018865
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Entry
KSO_018865 CDS
T02462
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
bami
Bacillus amyloliquefaciens IT-45
Pathway
bami03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bami00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KSO_018865 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bami03021
]
KSO_018865 (rpoB)
03400 DNA repair and recombination proteins [BR:
bami03400
]
KSO_018865 (rpoB)
Enzymes [BR:
bami01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KSO_018865 (rpoB)
Transcription machinery [BR:
bami03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KSO_018865 (rpoB)
DNA repair and recombination proteins [BR:
bami03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KSO_018865 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
AGF29253
LinkDB
All DBs
Position
complement(3802416..3805997)
Genome browser
AA seq
1193 aa
AA seq
DB search
MTGQLVQYGRHRQRRSYARISEVLELPNLIEIQTSSYQWFLDEGLREMFQDISPIEDFTG
NLSLEFIDYSLGDPKYPVEESKERDVTYSAPLRVKVRLINKETGEVKDQDVFMGDFPIMT
DTGTFIINGAERVIVSQLVRSPSVYFSGKVDKNGKKGFTATVIPNRGAWLEYETDAKDVV
YVRIDRTRKLPVTVLLRALGFGSDQEILDLIGENEYLRNTLDKDNTENSDKALLEIYERL
RPGEPPTVENAKSLLDSRFFDPKRYDLANVGRYKINKKLHIKNRLFNQRLAETLVDPETG
EILAEKGQILDRRTLDKVLPYLENGIGFRKLYPNGGVVEDEVMLQSIKIYAPTDAEGEQT
INVIGNAYIEEAIKNITPADIISSISYFFNLLHGVGDTDDIDHLGNRRLRSVGELLQNQF
RIGLSRMERVVRERMSIQDTNTITPQQLINIRPVIASIKEFFGSSQLSQFMDQTNPLAEL
THKRRLSALGPGGLTRERAGMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFAKVNRF
GFIETPYRRVDPETGKVTPRIDYLTADEEDNYVVAQANAKLSDDGSFLDDSIVARFRGEN
TVVARNRVDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMQPEAPIVGT
GMEYVSGKDSGAAVICKHPGIVERVEAKNVWVRRYEEIDGQKVKGNLDKYSLLKFVRSNQ
GTCYNQRPIVSVGDEVVKGEILADGPSMELGELALGRNVMVGFMTWDGYNYEDAIIMSER
LVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDDRGIIRIGAEVNDGD
LLVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIIHDVKVFNREDGDE
LPPGVNQLVRVYIVQKRKISEGDKMAGRHGNKGVISKILPEEDMPYLPDGTPIDIMLNPL
GVPSRMNIGQVLELHMGMAARYLGIHIASPVFDGAREEDVWETLEEAGMSRDAKTVLYDG
RTGEPFDNRVSVGIMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEV
WALEAYGAAYTLQEILTVKSDDVVGRVKTYEAIVKGDNVPEPGVPESFKVLIKELQSLGM
DVKILSGDEEEIEMRDLEDEEDAKQADGLALSGDEAPEETASPDVERDAVTKE
NT seq
3582 nt
NT seq
+upstream
nt +downstream
nt
ttgacaggtcaactagttcagtatggacgacaccgccagcgcagaagctatgctcgcatt
agcgaagtgttagaattaccaaatctcattgaaattcaaacctcttcttatcagtggttt
cttgatgagggtcttagagagatgtttcaagacatatcaccaattgaggatttcactggt
aacctctctctagagttcattgactacagtttaggagatcctaagtatcccgttgaagag
tcaaaagaacgtgatgtgacttactcagctccgctaagagtgaaggttcgtttaattaac
aaagaaactggagaggtaaaagaccaggatgtcttcatgggtgatttccctattatgaca
gataccggtacttttatcatcaacggtgcagaacgtgttatcgtatctcagcttgttcgg
tctccaagtgtatatttcagtggtaaagtagacaaaaacggtaaaaaaggttttaccgcg
actgtcattccaaaccgtggcgcatggttagaatacgaaactgatgcgaaagatgttgtg
tatgtccgcattgatcgcacacgtaagttgccggttacggttcttttgcgtgctctcggc
ttcggttccgaccaagagattctcgatctcattggtgagaacgaatatctccgcaataca
ctggataaggacaacaccgaaaacagtgacaaagcgcttcttgaaatctatgagcgcctt
cgtcccggagagccgcctacagtagaaaacgcaaaaagcttgctggattcccgtttcttc
gatccgaagcgatacgaccttgcgaatgtaggacgctataaaattaataaaaagcttcat
atcaagaaccgcctgtttaaccagcgccttgcagaaacactggtggatccggaaaccggt
gaaattctcgctgaaaaagggcagattcttgacagaagaacacttgataaagtattgcca
tacttagaaaatggaatcggcttcagaaaactttatcctaacggcggcgttgtcgaggat
gaagtgatgcttcaatccattaaaatctatgctcctactgatgcagaaggagagcagacg
atcaatgtgatcggcaatgcttacatcgaagaggcgattaaaaacattacgcctgctgat
attatttcttctatcagctacttcttcaacctcctgcacggagtgggcgacactgatgat
atcgaccatctcggaaaccgccgtctgcgttctgtaggtgagctcctgcaaaaccaattc
cgtatcggtttaagccggatggaacgtgtcgtacgtgaaagaatgtctattcaagacacg
aatacaattacgccgcagcagctgattaacatcagacctgttattgcgtctattaaagag
ttcttcggaagctcacagctttctcaattcatggatcagacgaacccgcttgctgaattg
acgcacaaacgccgtctgtcagctctcggaccgggcggtttgacgcgtgagcgcgcaggt
atggaagtacgtgacgttcactactctcactacggccgtatgtgtccgattgaaacgcct
gagggcccgaacatcggtttgatcaactcattgtcatcatttgcgaaagtaaaccgcttt
ggtttcattgagacgccataccgccgcgttgatcctgaaacaggaaaagtaacgcctaga
atcgactacctgactgctgatgaagaggataactatgtcgtagcccaagcgaatgctaag
ctgagcgatgacggttctttcttggatgacagcatcgtagcgcgtttcagaggggaaaac
accgttgtagcccgcaaccgcgtggattacatggacgtatctcctaaacaggttgtttct
gctgcgacagcatgtattccgttcttggaaaacgatgactcgaaccgcgccctcatggga
gcgaacatgcagcgtcaggctgtgcctttgatgcagccggaagctccgatcgtcggaacg
ggtatggaatacgtatccggtaaagactccggtgcagccgttatttgtaaacaccctggt
atcgtagaacgggtggaagcgaaaaacgtatgggtgcgccgctatgaagaaattgacggc
caaaaagtaaaaggcaacctggataagtacagcttgctgaaatttgtccgctccaaccaa
ggtacgtgctacaaccagcgtccgattgtaagtgtcggcgatgaagtagtcaaaggagaa
atccttgctgacggaccttcaatggagcttggtgaacttgctctcggccgcaacgtaatg
gtcggcttcatgacatgggacggttacaactatgaggatgccatcatcatgagtgaacgc
cttgtgaaagatgatgtatacacatctattcacattgaagaatatgaatcagaagcacgt
gatacaaagcttgggccggaagagatcacccgcgatattccaaacgtaggggaagacgcg
cttcgcaaccttgatgaccgcggaattatccgtatcggtgcggaagtcaacgacggagac
cttctcgtaggtaaagtaacgcctaaaggtgtaactgagcttacggctgaagaacgcctt
cttcatgcgatctttggagaaaaagcgcgtgaagtccgtgatacttctctccgtgtgcct
cacggcggcggcggaattatccacgacgtaaaagtcttcaaccgtgaagacggcgacgaa
cttcctccgggagtgaaccagcttgtacgcgtatatatcgttcagaaacgtaagatttct
gaaggtgataaaatggccggacgtcacggaaataaaggggttatctcgaagattcttcct
gaagaagatatgccttaccttcctgacggcacgccgatcgatatcatgcttaacccgctg
ggtgtaccatcacgtatgaatatcggtcaggtattagaacttcacatgggtatggctgcc
cgctacctcggcattcacatcgcgtcacctgtatttgacggcgcgcgtgaagaagatgtg
tgggaaacacttgaagaagcaggcatgtcaagagacgctaaaacagttctttatgacggc
cgtacgggagaaccgttcgacaaccgtgtatcagtcggaatcatgtacatgatcaaactg
gcacacatggttgacgataaacttcatgcccgttctacaggtccttactcacttgttacg
cagcagcctctcggcggtaaagcccaattcggcggacagcgtttcggtgagatggaggtt
tgggcgcttgaagcttacggcgcagcttacacgcttcaagaaatcctgactgtgaagtcc
gatgacgtggtcggacgtgtgaaaacatatgaagccatcgtcaaaggcgacaatgttcca
gagcctggtgttccggaatcattcaaagtattgatcaaagagcttcaaagcttaggtatg
gacgtaaaaatcctctcaggcgatgaagaagaaatagaaatgagagatctagaagacgag
gaagatgcgaaacaggctgacggccttgcattatcaggtgatgaagcgccggaagaaaca
gcatctccagacgttgaacgtgacgcagtaacgaaagaatag
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integrated database retrieval system
