Buchnera aphidicola 5A (Acyrthosiphon pisum): BUAP5A_033
Help
Entry
BUAP5A_033 CDS
T00820
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase beta chain
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
bap
Buchnera aphidicola 5A (Acyrthosiphon pisum)
Pathway
bap03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bap00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BUAP5A_033 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bap03021
]
BUAP5A_033 (rpoB)
03400 DNA repair and recombination proteins [BR:
bap03400
]
BUAP5A_033 (rpoB)
Enzymes [BR:
bap01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BUAP5A_033 (rpoB)
Transcription machinery [BR:
bap03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BUAP5A_033 (rpoB)
DNA repair and recombination proteins [BR:
bap03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BUAP5A_033 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
BSH_CzcB
Motif
Other DBs
NCBI-ProteinID:
ACL30418
UniProt:
B8D8J6
LinkDB
All DBs
Position
complement(40622..44650)
Genome browser
AA seq
1342 aa
AA seq
DB search
MVYSYTEKKRIRKDFGKRPKVLDIPYLLSIQLNSFKKFIQPDLSGQHGLEAAFRSVFPIR
GYNGNSELQYVSYRLGETIFDVKECQIRGATYSAPLRVKLRLVIYERDILEATVKDIKEQ
EVYMGEIPLMTNNGTFIINGTERVVVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPVSIILRALNYNTEEILNIFFEKNIFKIENNKIVLE
LVPERLRGETASFNIKKNGIIYVEKGRRITAKHIQELKNNKIKSITVPVEYILGRIVSKN
YVDKKTGETIISSNTELSLEILEKLKKLGFYSIETLFTNDLDHGPYISETLRIDSSNDRM
SALIEIYRVMRPGEPPTKEATENLFENLFFSEDRYDLSTVGRMKFNRSLLREETKGSSTL
NKEDIIDVIKKIIDIRNGKGEVDDIDHLGNRRVRSVGEMAENQFRIGLVRVERAVKERLS
IGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGLGGLTR
ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNSYGFLETPYRKVCNGLVS
EEIHYLSAIEEGNYIIAQANTNIDKTGFFTDDLVTCRHKGESSLFNRNQVNYMDVSTQQI
VSVGASLIPFLEHDDANRALMGANMQRQAVPTLKTDKPLIGTGMERAVAVDSGVTAVAKR
SGVVQYVDASRIVIKVDEKEMYSREAGIDIYNLTKYTRSNQNTCINQQPCVNLGEKIKKG
DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELSCIS
RDTKLGAEEISSDIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQIFTRDGVKKDKRALEIEDMQLKKIKQDL
TEEFKIFESSLFTHIKKTFISLDIETKQLDTLPFEKWFSVDIKQKDKKKEIEKLAKQHHE
LKEEFNKKIEIKRQKITQGDDLAPGVLKIVKVYLAVKRQIQPGDKMAGRHGNKGVISKIN
PVEDMPYDENGIPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINHMLKTQEKISN
LRKFIQKAFDLGDNLRQKVNLDTFSNEEILRLAKNLKNGIPISTPVFDGAQENEIKQMLK
FAGLPTSGQIILFDGRTGEKFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGASYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMP
ESFNVLLKEIRSLGINIELESE
NT seq
4029 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcttataccgaaaaaaaacgtattcgtaaagattttggcaaacgtcctaaa
gtgttagatataccatatcttctttcgattcaattaaattcttttaaaaaatttattcaa
ccagatttatcaggtcaacacggattagaagcagcatttcgttctgtatttcctattcgc
ggttataatggaaactctgaattacaatatgttagttaccgtttaggagaaacaatattt
gatgttaaagaatgtcaaataagaggtgctacttattcggcgccactgagagtaaaatta
cgccttgttatctacgaacgtgacatattagaagctactgttaaagacattaaagaacaa
gaagtatatatgggtgaaattccattaatgactaacaatggaacatttataataaatgga
acagaaagagtagttgtttctcagttacaccgtagtcctggagtcttttttgatagtgat
aaaggtaaaacacactcctcaggaaaagttctatataatgcccggattattccttatcgc
ggttcttggttagattttgaatttgatccaaaagataatttatttgttagaattgataga
cgtagaaagctaccagtaagcattattttgcgggctcttaattataatacagaagaaata
ttaaacatattttttgagaaaaatatttttaaaatagaaaataacaaaattgtattagaa
ttagttcccgaaagactccgaggtgaaactgcatcatttaatattaaaaaaaatggaata
atatatgtagaaaaaggtcgtcgtattactgctaaacatattcaagaattaaaaaataat
aaaataaaatctatcacagttcctgttgaatatattcttggaagaattgtatctaaaaat
tatgtagataaaaaaacaggcgaaacaattatttcttctaatacagaattatctttagag
atattagaaaaattaaaaaaattaggtttctactctattgaaacattgtttactaatgat
ttagatcatggtccatatatatcagaaacgttacgaatagattcatctaatgatcgtatg
agtgctttaatagaaatttatcgagttatgaggccaggagaaccacctactaaagaggca
acagaaaatttattcgaaaatttatttttttctgaagacagatacgatctttctactgta
ggtagaatgaaatttaacagatcccttttacgtgaagaaactaaaggttcaagtacgtta
aataaagaagacatcattgatgttataaaaaaaattatcgatatccgaaatggaaaagga
gaagtagatgatattgatcatctaggaaatcgacgtgttagatcagtaggtgaaatggcg
gaaaaccaatttagaatcggtttagtaagagtggaaagagcagttaaagaaagattgtct
atcggcgatttagatacgcttatgccacaagatatgattaatgctaaaccaatatcagct
gcggttaaagaattttttggttctagtcaattatcacaatttatggatcaaaataatcct
ttatcagaaattacgcataaaagaagaatttcagcattaggtttaggtggtttaactaga
gaaagagcaggttttgaagttcgagatgtacatccaacacattatggacgagtatgtcct
atcgaaacaccagaaggtccgaatattggattaattaattctttatctgtgtacgctcaa
acaaattcttatggatttttagaaacaccttatcgaaaagtttgtaacggtttagttagt
gaggaaattcattatctatcagctatagaagaaggcaattatattattgcacaagctaat
actaatatcgataaaactggtttttttactgacgatttagtaacttgccgacataaaggc
gaatctagtttattcaaccgtaatcaagtaaattatatggatgtatctactcaacaaatt
gtatctgttggagcgtctttaattccttttcttgaacatgatgatgctaatagagcactg
atgggtgctaatatgcaacgtcaagcagtacctacccttaaaacagataaacctttgata
gggaccggaatggaacgagcagtagcagtagattctggtgttacagcagtagctaaaaga
agtggtgttgttcaatatgtagatgcttcacgtatagtaataaaagtagatgaaaaagaa
atgtattcaagagaagctggaatagatatttataatcttactaaatatactcgatctaat
caaaatacttgtattaatcaacagccctgcgttaatttaggcgaaaaaattaaaaaaggt
gatgttctagcagacggtccatctacagatttaggagaacttgcattaggacaaaatatg
cgtgtagcatttatgccatggaatggatacaattttgaagattcaatattagtctcagaa
agggttgttcaagaagatcgcttcaccacaattcatattcaggagttatcttgtatatca
agagatactaaattaggagcagaagaaattagttcagatataccaaatgtaggagaagct
gcattatctaaattagacgaatcaggaattgtttatattggagcagaagtaactggcggc
gacatactagttggcaaagtaactccaaaaggggaaacacaattaactccagaagaaaaa
ttattacgtgctatttttggtgaaaaagcatcagatgtaaaagattcttcattacgagta
ccgaatggagtatcaggtactgtgatagatgtacaaatatttacaagagatggtgtaaaa
aaagataaaagagctttagaaattgaagacatgcaactgaagaaaatcaaacaagatctt
actgaagaattcaaaatatttgaatctagtttatttactcatattaaaaaaacttttata
tcgcttgatattgaaacaaaacagcttgatacactaccttttgaaaaatggttttctgta
gacattaaacaaaaagacaaaaaaaaagaaatagaaaaacttgctaaacaacatcatgaa
ttaaaagaagaatttaataaaaaaatagaaataaaacgtcaaaaaattacacaaggcgat
gatcttgctcctggtgttttaaaaatagttaaagtgtatttagcagtgaaacgtcagatt
caacctggcgataaaatggcaggaagacatggaaataaaggagtaatttctaaaattaat
cctgttgaagatatgccttatgacgaaaatggtataccagttgatattgttttaaatcca
ttaggtgtaccctctcgtatgaatatcggtcagatactagaaacacatttaggtatggcg
gcaaaaggtattggtgataaaatcaatcatatgcttaaaacacaagaaaaaatatctaat
ttacgaaaatttatacaaaaagcttttgacttaggagataacctgagacaaaaagtaaat
ttagatacattttccaatgaagaaatattacgtttagcaaagaatttaaaaaatggcatc
cctatttctacaccggtatttgatggtgcacaagaaaatgaaataaaacaaatgttgaaa
tttgcaggtttacctacttcaggtcaaattatactttttgatggaagaacaggcgaaaaa
tttgaaagacctgttactgttggttatatgtatatgttaaaattaaatcacttagtagac
gataaaatgcatgctcgttctactggatcttatagtttagtgactcaacaaccattaggt
ggaaaagctcagtttggtggacagcgtttcggtgaaatggaagtttgggcattagaggcg
tacggagcgtcttatacgttacaagaaatgttaaccgtgaaatctgatgacgttaatgga
agaactaaaatgtataaaaatattgtagatggaaatcatcaaatggaacctggaatgcca
gaatcttttaatgtacttttaaaagaaattcggtcattagggattaatattgaactagaa
agcgaataa
DBGET
integrated database retrieval system
