Bifidobacterium aquikefiricola: QN215_07370
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Entry
QN215_07370 CDS
T10738
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
baqk Bifidobacterium aquikefiricola
Pathway
baqk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
baqk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
QN215_07370
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
baqk03021
]
QN215_07370
03400 DNA repair and recombination proteins [BR:
baqk03400
]
QN215_07370
Enzymes [BR:
baqk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
QN215_07370
Transcription machinery [BR:
baqk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
QN215_07370
DNA repair and recombination proteins [BR:
baqk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
QN215_07370
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Pentapeptide
Ac81
Motif
Other DBs
NCBI-ProteinID:
XDS44086
UniProt:
A0AB39U535
LinkDB
All DBs
Position
complement(1747151..1751245)
Genome browser
AA seq
1364 aa
AA seq
DB search
MLDVNAFDKLRIGLATAEDIRGWSYGEVKKPETINYRTLKPEKDGLFGEQIFGPTRDWEC
ACGKYKRVRFKGIVCERCGVEVTKSRVRRERMGHIELAAPVTHIWFFKGVPSRLGYLLDI
APKDLEKVIYFAAYMVTKVDEDQRHQDLPDLQDEFDTEIAHLEKARDNEIEKRAKKVEED
LAELEASAEAKGSMKSKIRNGAERDMTNIRQRYDDQIQRLSAVFDRFKSLQPGDMEGDVD
LWREMEDRYGDYFEGCMGAEAIKKRLQDFDLAGCEKELREEIETGSGQRKARALKRLKVV
NAFLTTGNKPEAMVLDVVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIE
LGAPEIMLNNEKRMLQEAVDSLFDNGRRGRPVTGASNRPLKSLSDMLKGKQGRFRQNLLG
KRVDYSGRSVIVVGPSLRMHQCGLPKPMALELFKPFVIKRLVDLNYAQNMKSAKRLVDRG
DAEVWGVLEEVISEHPVLLNRAPTLHRLGIQAFEPILVEGKAIHLPPLACAAFNADFDGD
QMAVHLPLSAEAQAEARSLMLASDNILKPADGHTVTMPSQDMILGLYYLSTVREGAKGQG
HILSSLAEARMALDRGEIDMQSKILLRVPADFVLPKNWEPQEIKVVDPEPGEPDVAKEER
FKDGSILFATSYGRVLVNETLPVDYPFINEQVPKGKLAGIVDDIATRYSTAQVAATLDAL
KDLGFTRAPWSGVTMAFSDIVAPPERNDMVHTYEQQADKVNSQYDMGLLTDEERRQELIN
LWTECTDKVAEAMREHFTADNNVNIMVQSGARGNWMQIRQIAGMRGLVANPKGEIIPRPV
KSNYRDGLSVLEYFISQHGARKGLADTALRTAESGYLTRRLVDVSQDVIVREQDCGTKRG
LTMKVAERDENGNLVLVKNADGGPYSRLLAADVIDPKDGKTVLYKRDEAMSMDVLRNMVA
HGVEEVKARSVLTCESKRGVCSKCYGWSLATNTLVDVGEAVGIVAAQSIGEPGTQLTLRS
FHSGGVASASDITQGLPRVTELFEARTPKGEAPIVEFPGNIKVEDTDRGRQVTLTPDDST
IEPISYPVTRRAPLLVKDGEHVDVGTQLIEGSVDPKKILRILGPRAAQVNIVNEVHDVYR
SQGVDIHDKHIEVIVHQMLRRVTVIDSGDTDLLPGELADQTKFKAANIAAVKKGGKPAAG
RPELMGITKASLATDSWLSAASFQETTRVLTEASLSQKVDDLKGLKENVMIGKLIPAGTG
LLRYHNAVVEPDKAIRDTIYPNFGLGGDGSNMDLSDADLNDVDFSNIDFGDLKLGDDFNP
DDFLNDQGGQGGADSHDTDNGAIKPEQGNAAGTAPSGASSADNA
NT seq
4095 nt
NT seq
+upstream
nt +downstream
nt
gtgctggacgtcaacgcatttgacaaactgagaatcggcttggccaccgcggaagatatt
cgcggatggagctatggcgaagtcaagaagcctgaaaccattaactacagaaccttgaag
ccagagaaggacggtctgttcggagaacaaatcttcggacctactcgcgactgggaatgc
gcctgcggaaaatacaagcgcgtacgtttcaagggcatcgtctgcgaacgctgcggcgtg
gaagtcaccaagtcacgcgttcgccgtgaacgcatgggacatatcgagcttgcagcccct
gtaacgcatatctggttcttcaagggtgtgccatcacgcttgggctacctgctggacatc
gctcccaaggatttggaaaaggtcatctactttgccgcctacatggtcaccaaggtggac
gaggatcagcgtcatcaggatcttccagatctgcaggatgaattcgataccgaaatcgca
catctcgaaaaggctcgtgacaacgagatcgaaaagcgtgcgaagaaggtagaagaggac
cttgccgaacttgaggcttcggcagaggccaagggctcgatgaagtccaagattcgcaat
ggcgcagagcgcgacatgacgaacatccgtcaacgctacgacgatcagattcagcgtctg
agcgccgtattcgaccgtttcaagagcctgcagccaggcgatatggaaggcgacgtcgat
ctgtggcgcgagatggaggatcgctacggcgattacttcgaaggctgcatgggtgccgaa
gccatcaagaagcgtctgcaggacttcgatctggcaggatgcgagaaggaactccgcgag
gagatcgagaccggctcaggccagcgcaaggcacgcgccttgaagcgtttgaaggtcgtg
aacgcattcctcaccaccggcaacaagcccgaggccatggttctggacgtggttcccgtc
atccctcctgaccttcgaccgatggttcagctcgatggtggccgtttcgccacctccgat
ctgaacgatctgtaccgtcgtgtcatcaaccgcaacaaccgtctgaagcgactcatcgag
ctgggagctcctgagatcatgctcaacaacgagaagcgcatgctgcaggaagccgtggat
tcgctcttcgacaacggtcgccgtggtcgtccagtcaccggcgcttcgaaccgtccgctc
aagtccctctccgacatgctcaagggcaagcagggccgcttccgtcagaaccttctcggt
aagcgtgtggactactcaggtcgttccgtaatcgttgtcggaccaagtctgcgcatgcac
cagtgcggtctgccaaagccgatggccttggaactcttcaagccatttgtcatcaagcgt
ctggtcgatctgaactatgcgcagaacatgaagtccgcaaagcgtcttgttgaccgtggc
gatgccgaggtctggggcgtgctcgaagaggtcatttcggagcacccagtgctgctcaac
cgcgcaccaaccctgcaccgtctgggcattcaggccttcgagccgattctggtcgagggc
aaggctatccatcttccaccgttggcctgcgctgcattcaacgccgacttcgatggtgac
cagatggccgtccaccttcctctcagcgcagaggcacaggcagaggcacgttcgctgatg
ctggcttcggataacatcctcaagcccgctgacggacacaccgtgaccatgccttctcag
gacatgattctgggtctgtactacctgtcaaccgttcgtgagggcgccaagggtcaggga
cacattctgtcttcgctcgctgaggctcgtatggccttggatcgtggcgaaatcgacatg
cagtcgaagattctgcttcgcgtacctgctgacttcgtgcttcccaagaactgggaaccg
caggaaatcaaggtcgttgacccagaaccaggcgagcccgacgttgccaaggaggagcgt
ttcaaggatggttccattctgttcgccacctcgtatggccgcgtgctggtcaacgagacg
ctgccggttgactatccgttcatcaacgagcaggtgccgaagggcaagcttgctggcatc
gtcgatgacattgccacacgctattccactgctcaggttgctgccacactggacgcgctg
aaggatcttggattcacccgcgcaccgtggtcaggcgtgacgatggccttctccgacatc
gttgccccgcccgagcgcaatgacatggttcatacgtatgagcagcaggccgacaaggtc
aattcccagtacgatatgggtctgttgactgacgaggagcgccgtcaggagcttatcaac
ctgtggaccgaatgcaccgacaaggttgctgaggccatgcgcgagcatttcaccgcggac
aacaacgtaaacatcatggttcagtccggtgcccgtggaaactggatgcagattcgtcag
atcgcaggtatgcgtggtctggtggctaacccgaagggtgagatcattcctcgtcctgtc
aagtccaactaccgcgacggcctgtcagtgctggagtacttcatctcgcagcacggtgcc
cgcaagggtctggccgatacggcactgcgtaccgcagaatccggatacctcacccgtcgt
ctggtcgatgtgtctcaggacgtcatcgttcgcgaacaggattgcggcaccaagcgcggt
ctgaccatgaaggttgccgaacgtgatgaaaacggcaatctggtgctcgtcaagaacgct
gacggtggtccatattctcgtctgctcgcagccgacgtcatcgacccgaaggatggcaaa
accgtgctgtacaagcgcgatgaagccatgtcgatggatgtgcttcgcaacatggtcgcc
cacggagtcgaagaggtcaaggcacggtccgtgctgacctgcgagtccaagcgtggtgtg
tgctccaagtgctacggctggtcactggcaaccaacaccttggttgacgttggcgaggcc
gtcggcatcgtcgcggcacagtccatcggtgagcctggtacccagctgacgctgcgttcc
ttccactccggtggtgtggcctcggcatccgatatcacacagggtcttcctcgtgtcacc
gagcttttcgaagcccgcacaccaaagggtgaagctcctatcgtcgagttcccaggcaat
atcaaggtcgaggacaccgatcgtggtcgtcaggtcacgttgactcctgacgattcgacc
atcgagccgatctcgtaccccgtgacccgtagagctccgctgctggtcaaggatggcgag
catgtcgacgtgggtacgcagcttatcgaaggttccgtcgatccgaagaagattcttcgc
attctcggacctcgtgcagcacaggtcaacattgtgaacgaagtccacgatgtgtaccgc
tcacagggtgtggatatccacgacaagcacatcgaggtcatcgtgcaccagatgctccgt
cgcgtgaccgtgatcgattccggcgacactgatttgctgccaggcgaacttgccgatcag
acaaagttcaaggccgcgaacattgcagccgtgaagaagggcggcaagcctgcagctggc
cgaccagagctcatgggtatcacgaaggcttcgttggccaccgattcctggctgtcggca
gcatcgttccaggagaccacacgagtccttaccgaagcttcgttgagccagaaggtcgat
gacctgaagggtctgaaggagaacgtcatgatcggtaagctcattcctgcaggaaccggt
ctcttgcgctaccacaatgcggttgtcgagcctgacaaggcaatccgtgacaccatctac
ccgaacttcggtctcggtggcgatggcagcaacatggatctgagcgatgccgatctcaac
gatgtcgacttctcgaatatcgacttcggcgatctgaagcttggcgacgatttcaacccc
gacgacttcctgaacgatcaaggcggtcagggtggagctgattcacacgacaccgacaac
ggcgcaatcaagccagaacagggcaatgcggcgggaacagcaccatccggtgcatcctca
gccgataatgcctga
DBGET
integrated database retrieval system
