Bradyrhizobium arachidis: WN72_30095
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Entry
WN72_30095 CDS
T06898
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
barh
Bradyrhizobium arachidis
Pathway
barh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
barh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
WN72_30095 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
barh03021
]
WN72_30095 (rpoB)
03400 DNA repair and recombination proteins [BR:
barh03400
]
WN72_30095 (rpoB)
Enzymes [BR:
barh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
WN72_30095 (rpoB)
Transcription machinery [BR:
barh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
WN72_30095 (rpoB)
DNA repair and recombination proteins [BR:
barh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
WN72_30095 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
QOZ70088
LinkDB
All DBs
Position
complement(6301290..6305408)
Genome browser
AA seq
1372 aa
AA seq
DB search
MAQQTFTGRKRVRKFFGHIKEVAEMPNLIEVQKASYDQFLMVDEPTGGRLDEGLQAVFRS
VFPISDFSGTSMLEFVRYEFEQPKYDVDECRQRGMTFAAPLKVTLRLIVFDIDEETGAKS
VKDIKEQDVYMGDIPLMTMNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFA
ARVIPYRGSWLDIEFDAKDIVYARIDRRRKIPVTSLMFALGLDGEAILSTFYKKILYKRT
KEGWRVPFDANRFRGYSTVNDLIDADTGKVVLEAGKKLTVRAARQLQEKGLKALRMADEE
LVGNYVAEDLVNPKTGEIHAEAGEEITDKLMKALNEQGYKELPLLDIDHVNVGPYIRNTL
SADKNMTREDALFDIYRVMRPGEPPTLESAQAMFQSLFFDAERYDLSAVGRVKMNMRLDL
DAPDTQRTLRKEDILSVIKTLVDLRDGKGEIDDIDHLGNRRVRSVGELMENQYRIGLLRM
ERAIKERMSSVDIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRRLS
ALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFVETPY
RKVKDGRVTDEVVYLSAMEEGRYTVAQANVPLDPKGRFTEDLVVCRHAGEVLPVTPDKVD
YMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEGVVARD
SGAAIAARRSGVIDQIDATRVVIRATEDLDPTKSGVDIYRLMKYQRSNQSTCINQRPLVK
VGDIVKKGDIIADGPSTDLGELALGRNVLVAFMPWNGYNFEDSILLSERIVKEDVFTSIH
IEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVRAGDILVGKITPKGE
SPMTPEEKLLRAIFGEKASDVRDTSLRVPPGVQGTIVEVRVFNRHGVDKDERALAIEREE
IERLAKDRDDEQAILDRNVYNRLAELLEGRQGIAGPKGFKKDTKITRAVLEEYPKSQWWL
FASPNDKLMAEIEAMRKQYDESKKGLEQRFLDKVEKLQRGDELPPGVMKMVKVFVAVKRK
IQPGDKMAGRHGNKGVVSKIVPIEDMPFLEDGTHADIVLNPLGVPSRMNVGQILETHLGW
ACAGLGKRIGQTVDAYLSKQDIKPLKETLKKVYGEDETIKTLNDNELLELGHNLSRGVPI
ATPVFDGAKEADIEEMLKLAGLDASGQSTVYDGRTGDAFDRKVTVGYIYMLKLHHLVDDK
IHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVAGRT
KVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVDLHNSKMGPAPTSEAAE
NT seq
4119 nt
NT seq
+upstream
nt +downstream
nt
atggcgcagcagacattcaccggtcgcaaacgcgttcgcaagttcttcggacacatcaag
gaagtcgccgagatgccgaacctcatcgaggttcagaaggcgtcctatgaccagttcctg
atggtcgatgaacccactggcggccgcctcgacgagggtctgcaggcggtgttccgctcg
gtgttcccgatctccgacttctcgggcacctcgatgctggaattcgtccgctacgagttc
gagcagccgaaatacgacgtcgacgagtgccgccagcgcggcatgaccttcgcggctccc
ctcaaggtgacgctgcgcctcatcgtgttcgatatcgacgaggaaaccggtgcgaagtcg
gtcaaggacatcaaggagcaggacgtctacatgggcgatatcccgctcatgacgatgaac
ggcaccttcatcgtcaacggcaccgagcgcgtcatcgtctcgcagatgcaccgttcgccc
ggcgtgttcttcgaccacgacaagggcaagacccattcctcgggcaagctgctgttcgcc
gcccgcgtgatcccgtatcgcggctcctggctcgacatcgagttcgacgccaaggacatc
gtctatgcgcgtatcgaccgtcgccgcaagattccggtgacgtcgctgatgttcgccctc
ggcctcgacggcgaagcgatcctgtccacgttctacaagaagatcctctacaagcggacc
aaggaaggctggcgcgttccgttcgacgccaaccgtttccgcggctactcgaccgtcaac
gacctgatcgacgccgacaccggcaaggtcgtgctcgaggccggcaagaagctcaccgtc
cgtgccgcccgccagctccaggagaaggggctaaaggcgctgcgcatggcggatgaggaa
ctggtcggcaactacgtcgccgaggacctcgtcaacccgaagacgggtgagatccacgcc
gaagccggtgaggaaatcaccgacaagctgatgaaggcgctcaacgagcagggctacaag
gagctgccgctgctcgacatcgaccacgtcaatgtcggcccctacatccgcaacacgctc
tcggccgacaagaacatgacgcgcgaggacgcgctgttcgacatctaccgcgtgatgcgt
ccgggcgagccgccgacgctggaatcggcgcaggccatgttccagtcgctgttcttcgac
gccgagcgttacgacctttccgcggtcggccgcgtcaagatgaacatgcgcctcgacctc
gatgcgcccgacacccagcgcacgctgcgcaaggaagacatcctctcggtcatcaagact
ctggtggacctgcgcgacggcaagggcgagatcgacgacatcgaccatctcggcaaccgc
cgtgtgcgctcggtcggcgagctcatggagaaccaataccgcatcggcctcctgcgtatg
gagcgcgcgatcaaggagcgcatgtcctcggtcgacatcgacacggtcatgccgcaggac
ctgatcaacgcgaagcccgcggctgccgccgtgcgcgagttcttcggctcttcgcagctc
tcgcagttcatggaccagaccaacccgctctcggagatcacccacaagcgtcgtctctcg
gcgcttggaccgggcggtctgacccgcgagcgcgccggcttcgaagtccgcgacgtgcat
ccgacccattacggccgtatctgcccgatcgagacgccggaaggtccgaacatcggcctg
atcaactcgctcgcgaccttcgcgcgcgtgaacaagtacggcttcgtggaaacgccttac
cgcaaggtcaaggacggccgcgtcaccgacgaggtcgtgtacctctcggcgatggaagag
ggccgctacacggtcgcgcaggcgaacgtgccgctcgacccgaagggccgcttcaccgaa
gacctcgtggtctgccgtcacgccggcgaagttctgccggtgacgccggacaaggtcgac
tacatggacgtgtcgccgaagcagctcgtctcggtcgccgcggcgctgatcccgttccta
gagaacgacgacgccaaccgcgcgctgatgggctcgaacatgcagcgccaggcggtgccg
ctggttcgcgccgaggcgccgttcgtcggcaccggcatggaaggcgtcgttgcccgtgac
tcgggtgccgcgatcgcggcgcgccgttccggcgtgatcgaccagatcgacgcgacccgc
gtcgtcatccgcgccacggaagatctcgatccgaccaagtcgggcgtcgatatctaccgc
ctgatgaagtaccagcgctccaaccagtcgacctgcatcaaccagcgtccgctggtgaag
gtcggcgacatcgtcaagaagggcgacatcatcgccgacggtccgtcgaccgatctcggc
gagctcgcgctcggccggaacgtgctcgtcgcgttcatgccgtggaacggctacaacttc
gaagactcgatcctgctctccgagcggatcgtgaaggaagacgtcttcacctcgatccac
atcgaggagttcgaggtgatggcccgcgacaccaagctcggacctgaggaaatcacccgc
gacattccgaacgtctcggaagaagcgctgaagaacctcgacgaagccggtatcgtctac
atcggcgcggaagtgcgtgccggcgacatcctggtcggcaagatcacgccgaagggcgaa
agcccgatgacgccggaagagaagctcctgcgcgccatcttcggcgagaaggcctccgac
gttcgcgacacctcgctgcgcgttcctccgggcgtgcagggcacgatcgtggaagtgcgc
gtgttcaaccgtcacggcgtcgacaaggacgagcgtgcgctggcgatcgagcgggaagag
atcgagcgtctggccaaggaccgcgacgacgagcaggcgatcctggaccgcaacgtctac
aaccgtcttgccgagctcctcgaggggcggcagggcattgccggtccgaagggcttcaag
aaggacaccaagatcacccgtgcggtgctcgaggagtacccgaagtcgcagtggtggctg
ttcgcttcgccgaacgacaagctgatggccgagatcgaggccatgcggaagcagtacgac
gagtcgaagaaggggcttgaacagcgcttcctcgacaaggtcgagaagctccagcgcggc
gacgaattgccgcccggcgtgatgaagatggtcaaggtcttcgtcgcggtgaagcgcaag
atccagcccggcgacaagatggccggccgccacggcaacaagggcgtggtgtcgaagatc
gtgccgatcgaggacatgccgttcctcgaagacggtacgcacgccgacatcgtgctcaac
ccgctgggcgtgccctcgcgcatgaacgtcggacagatcctcgagacccatctcggctgg
gcctgcgccggcctcggcaagcgtatcggccagacggtcgatgcctatttgtcgaagcag
gacatcaagccgctgaaggaaaccttgaagaaggtctacggcgaggacgagaccatcaag
acgctcaacgacaacgagctgcttgagctcggccataacctcagccgcggcgtgccgatc
gcaacaccggtgttcgacggcgccaaggaagccgacatcgaggagatgctgaagctggcc
ggtctggacgcttcgggccagtcgaccgtctatgacggccgcaccggcgatgccttcgat
cgcaaggtgacggtgggctacatctacatgctcaagctgcaccatctggtcgacgacaag
atccatgcgcgttcgatcggtccgtactcgctcgtcacccagcagccgctgggcggcaag
gcgcagttcggtggccagcgcttcggcgaaatggaggtgtgggcgctcgaggcttacggc
gcggcgtacacgctccaggagatgctgacggtgaagtcggacgacgtcgccggacgcacc
aaggtgtacgaggcgatcgtgcgcggcgacgacacgttcgaggccggtattccggaatcg
ttcaacgtgctggtcaaggaaatgcgctcgctcggcctcaacgtcgacctgcacaactcc
aagatgggaccggcgccgacgtcggaagcggccgagtaa
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