Bartonella sp. JB63: BJB63x_007350
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Entry
BJB63x_007350 CDS
T05552
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
barj
Bartonella sp. JB63
Pathway
barj03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
barj00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BJB63x_007350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
barj03021
]
BJB63x_007350
03400 DNA repair and recombination proteins [BR:
barj03400
]
BJB63x_007350
Enzymes [BR:
barj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BJB63x_007350
Transcription machinery [BR:
barj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BJB63x_007350
DNA repair and recombination proteins [BR:
barj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BJB63x_007350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Apocytochr_F_C
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
AQX29415
LinkDB
All DBs
Position
complement(823661..827869)
Genome browser
AA seq
1402 aa
AA seq
DB search
MNHEVMNLFNPQAPVQIFDSIRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGIICEKCGVEVTLSRVRRERMGHIELAAPVVHIWFLKS
LPGRISTLLDLTLKDIERVLYFENYIVTEPGLTSLKLHQLLSEEEYMLAIDEFGEDQFSA
MIGAEAIYELLAGMELDKIANDLRAELTETTSELKQKKLIKRLKIVENFLESGNKPEWMI
MKTIPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPGIIVRNEKRM
VQEAVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTG
PELKLHQCGLPKKMALELFKPFIYAQLDAKGYSSTVKQAKRLVEKEHPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGAPIIVPSQDMVLGLYYLSIVSEKEPGEGMAFADMGELHHALE
NKVVTLHTKIKGRFKDINKDGEVVSKLYDTTPGRLIIGELLPKNPNISFDIVNQEMTKKN
ISKMIDQVYRHCGQKETVIFCDRIMQLGFSHACRAGISFGKDDMVIPDSKSRLVAETEAL
AKEYEQQYSDGLITQGEKYNKVVDAWGKCTDRVADEMMKRIQAVEFDSKTGRKRQMNSIY
MMSHSGARGSTNQMRQLAGMRGLMAKPSGEIIETPIISNFKEGLTVNEYFNSTHGARKGL
ADTALKTANSGYLTRRLVDVAQDAIISAIDCGTVKGLTMQPIVDSGQIVASLGQRILGRT
ALLDILHPVSGELILEGGAMIEESDVAKIEEAGIQSIQIRSALTCETRLGVCAKCYGRDL
ARGTLVNQGEAVGVIAAQSIGEPGTQLTMRTFHLGGTAQVVDSSYFEASYDGKIEIRNRN
VVRNSEGHLVVMGRNMAILIKDESGKERVVHRISYGARIFVDDGDVVKCGQRIAEWDPYT
RPILTEVDGYIGFEDMVDGLSVTETADESTGITKRLVIDWRANPRGAELKPAIVIHTDEK
GETVAKLYKGGEARYMMSIETILSVEPGSYVKAGDVIARLPMESAKTKDITGGLPRVAEL
FEARRPKDHAIIAEISGTVRFGRGYKNKRRIIIEPHDESLEPVEYLIPKGKLFHLQEGDQ
IEKGDYILDGNPAPHDILAIKGVEALASYLVNEIQEVYRLQGVLINDKHIEVIVRQMLQK
VEITEPGDSGYILGDHVDRIELDEINDNLIAEGKRPAVGNPILLGITKASLQTPSFISAA
SFQETTRVLTEAAVSGKIDTLQGLKENVIVGRLIPAGTGGTIAQIRRIATVRDDLIVNER
RKSSDGETAKAMLTNMTANTAE
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
atgaaccacgaggtcatgaatcttttcaatcctcaggcaccagtgcagatattcgactct
attcgtatttcaattgcgagtcctgagaagattctgtcttggtcgtatggtgaaattaaa
aaaccagaaactatcaactaccgaacatttaagccagagcgtgatggtcttttttgtgca
cgtatatttggtcctattaaagattatgaatgtttatgtggaaaatataaacgtatgaaa
tataagggtattatctgtgaaaaatgtggcgtagaagtcactctttcacgggtacgtcgt
gaacgcatggggcatattgagcttgcagctccagtggttcatatttggttccttaagtca
ttacctggtcgtatttctactcttttagatttgactttaaaagatatcgaaagagttctt
tattttgaaaattatattgtcacagaaccagggttgacatctcttaagttacatcagctt
ctttctgaagaagaatatatgcttgctattgatgaatttggggaagaccaattttcagct
atgattggtgcagaggctatttatgaacttcttgctgggatggagttagataaaattgca
aatgatttgcgtgctgaattgactgagacaacttcggagttaaaacagaaaaaactgatt
aaaagacttaaaatcgttgagaatttccttgaatctggcaataaaccagagtggatgatt
atgaaaactattccagttattccaccagatttacgtccattagttccattagatggtggt
cgttttgcaacatcagatttgaacgatctctatcgacgtgttatcaatcgtaacaaccgt
ttaaagcgattaattgagctacgtgctcctggaattattgtccgcaatgaaaagcgtatg
gtacaagaagctgttgatgcattatttgataatggtcgtcgcggacgtgtaattactggg
gcaaataagcgtccattaaaatcgctttcagatatgctaaaaggtaagcaaggacgtttc
cgtcaaaatctacttggaaagcgtgttgattattcaggtcgctctgttatcgtgacaggt
cctgaattgaaattacatcaatgtggtcttccgaaaaaaatggctctcgaattatttaag
ccttttatttatgcgcaacttgatgcaaagggttattcatctactgtcaaacaggccaag
agacttgttgaaaaggaacatcctgaagtttgggatatcttagatgaggttattcgtgaa
catcctgttttgctgaatcgtgcaccgacgcttcatcgcttaggaattcaggcttttgaa
cctattttgattgaagggaaagctatacaacttcatccgttagtgtgtacagcgtttaat
gcggattttgacggtgatcagatggctgttcacgttcctctttctcttgaggcacagctt
gaagctcgtgttttgatgatgtcaaccaataatattcttcacccagctaatggtgctccg
attattgttccatcacaggacatggttcttggtctttactacctttccattgtttctgaa
aaagagccgggtgaaggaatggcttttgcagatatgggtgaattgcatcacgctttggaa
aataaagttgtaaccttgcatacaaaaattaaaggccgttttaaagatatcaataaggat
ggtgaagttgtttccaaactctacgatacaacacctggtcgtttaattattggtgagctt
ttaccaaaaaatcctaatatttcatttgatattgttaatcaggaaatgaccaaaaagaat
atttctaaaatgattgaccaagtttatagacactgtgggcagaaagagacagtgattttc
tgtgaccgtatcatgcagcttggtttttcgcatgcttgtcgtgctggaatttcatttggt
aaagatgatatggttattcctgatagtaaatctcgtctagtagcggaaacggaagctctt
gctaaggaatatgagcaacaatatagtgatggtttaattacccaaggtgagaaatataac
aaagtcgttgatgcttggggtaaatgtaccgatcgtgttgccgatgagatgatgaagcgt
attcaggcagttgaatttgattctaaaacaggtcgtaaacggcaaatgaattcaatttat
atgatgtcgcattctggtgcgcgtggttctactaatcagatgagacaattggctgggatg
cgtggattgatggcaaagccgtcgggtgaaattattgaaacgcctatcatttctaatttt
aaagaaggtttgactgttaatgagtacttcaattcaactcatggtgcacgtaaaggactt
gctgatactgcattaaagactgctaactctggttatcttacgcggcgtcttgttgatgtt
gcacaagatgctattatttcagcgattgattgtggtactgtaaaaggtcttactatgcag
ccaattgttgattcaggacaaattgttgcttctcttggtcagagaattcttggtcgtacg
gcgcttcttgatattttgcatccggtttctggtgagcttatccttgagggtggtgcaatg
attgaagaatctgatgttgctaagattgaagaggcaggaattcagtctattcaaatacgt
tctgctttgacctgtgagactcgtctcggtgtttgcgctaagtgctatggtcgtgattta
gcacgtggaacattggttaatcagggggaggcagtgggtgttatcgcggctcagtcaatt
ggggagccaggaactcagcttacgatgcgtactttccacttaggtggaacagcgcaggtt
gttgactcatcttattttgaagcgtcttatgatggtaagatagaaattcgtaaccgtaat
gtggttcgaaattctgagggccatttggtagttatggggcgcaatatggctattctgatt
aaggatgaatctggcaaagaacgtgttgtacatcgcattagttatggtgcacgcatcttc
gttgatgatggtgatgttgtaaaatgtggacagcgtattgcagagtgggatccttataca
cggccaattttaactgaggttgatggttatataggtttcgaagatatggttgatggttta
tcagtcacagaaacagctgatgaatctacaggtattactaagcgtttggttattgattgg
cgtgctaatccacgtggtgccgaattaaaaccagcaattgtcattcatacagatgagaag
ggtgaaactgttgctaaattatataaagggggtgaggctcgttatatgatgtcgatagag
acgattctctctgttgaacctggttcctacgttaaggcaggtgatgttattgcacgcttg
ccaatggaaagtgctaaaactaaagatattacgggtggtttgccacgtgtcgctgaactc
tttgaagcacgtcgtccaaaagatcatgctattattgctgaaattagtggtacagttcgg
tttggtcgtggttacaaaaataagcgccgtattatcattgaaccacatgatgaatccctt
gaaccagtggaatatttaattccgaaaggtaaattatttcatttgcaggaaggtgatcag
attgaaaaaggtgattatatccttgatggtaatccagcacctcatgatattttagcgatt
aaaggtgttgaagctttggcgtcttatcttgttaatgaaattcaggaagtttatcgtttg
caaggtgttttgatcaatgataagcatattgaagtgattgttcgccagatgttgcaaaag
gttgaaattacggaacctggtgattctggttatattttaggtgatcatgttgatcgcatt
gaattagatgaaatcaatgataatctgattgccgaaggtaaaagacctgcagtaggtaat
cctatacttcttgggattacaaaagcatctcttcagacgccctcttttatttcagcggcg
tcatttcaggaaacaacgcgtgtgctcactgaagcagcagtttcaggaaaaattgatact
ttgcaagggcttaaggaaaatgttattgttggtcggcttatacctgcgggtacgggcggt
acgattgcccaaattcgtcgtattgctactgttcgtgatgatctgattgtgaatgagcgc
cgcaaatccagtgatggtgaaaccgcgaaagctatgttaacaaatatgacggctaatact
gctgagtga
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