Bacillus sp. SD-4: LCG60_26515
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Entry
LCG60_26515 CDS
T10885
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
basd Bacillus sp. SD-4
Pathway
basd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
basd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LCG60_26515 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
basd03021
]
LCG60_26515 (rpoB)
03400 DNA repair and recombination proteins [BR:
basd03400
]
LCG60_26515 (rpoB)
Enzymes [BR:
basd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LCG60_26515 (rpoB)
Transcription machinery [BR:
basd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LCG60_26515 (rpoB)
DNA repair and recombination proteins [BR:
basd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LCG60_26515 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
UBR30107
LinkDB
All DBs
Position
complement(5084742..5088275)
Genome browser
AA seq
1177 aa
AA seq
DB search
MTGQLVQYGRHRQRRSYARISEVLELPNLIEIQTSSYQWFLDEGLREMFQDISPIEDFTG
NLSLEFIDYSLGEPKYSVDECKERDVTYAAPLRVKVRLINKETGEVKEQDVFMGDFPLMT
ETGTFVINGAERVIVSQLVRSPSVYYSGKVDKNGKRGFTATVIPNRGAWLEYETDAKDVV
YVRIDRTRKLPVTVLLRALGFGSDQEITELLGDNEYLSNTLEKDNTDSTEKALLEIYERL
RPGEPPTVENAKSLLVSRFFDPKRYDLANVGRYKINKKLHIKNRLFNQRLAETLVDPETG
EILAAEGTILDRRTLDRILPYLEKNIGFKTAKPMGGVVEGDVELQSIKIYAPESEGERVI
NVIGNANITRDVKHITPGDILASISYFFNLLYKVGDTDDIDHLGNRRLRSVGELLQNQFR
IGLSRMERVVRERMSIQDTNAITPQALINIRPVIASIKEFFGSSQLSQFMDQTNPLAELT
HKRRLSALGPGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFAKVNEFG
FIETPYRRVDPETGLVTGHVDYLTADEEDNYVVAQANMKLSEEGEFLDEDIVARFRGENI
VTNKERIDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMNPESPIVGTG
MEYVSAKDSGAAVICKHPGIVERVEAREVWVRRYVEVDGQTVKGDLDRYKMQKFIRSNQG
TCYNQRPIVSVGNEVVKGEILADGPSMELGELALGRNVLVGFMTWDGYNYEDAIIMSERL
VKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDERGIIRVGAEVKDGDL
LVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIILDVKVFNREDGDEL
PPGVNQLVRAYIVQKRKISEGDKMAGRHGNKGVISRILPEEDMPYLPDGTPIDIMLNPLG
VPSRMNIGQVLELHLGMAARYLGIHIATPVFDGAREEDVWGTIEEAGMANDAKTILYDGR
TGEPFDNRVSVGVMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVW
ALEAYGAAYTLQEILTVKSDDVVGRVKTYEAIVKGENVPEPGVPESFKVLIKELQSLGMD
VKMMSSDDTEIEMRDTEDDDDHQSADKLNVEVETTKE
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
ttgacaggtcaactagttcaatacggacgccaccgccaacgaagaagttatgcccgtatt
agtgaagtattagagttaccaaatcttatcgaaattcaaacctcttcttatcagtggttt
cttgatgagggtttgcgagaaatgttccaagacatttctccgattgaagactttacggga
aatctatcgcttgaatttatcgactacagcttaggtgaacctaaatactctgtagacgaa
tgcaaagagcgtgatgtgacgtatgcagcaccacttcgtgtaaaagtgcgtctaatcaac
aaggaaactggtgaagtaaaagaacaagatgtgttcatgggagatttcccactcatgaca
gagactggaacattcgtaattaacggtgcagaacgtgttatcgtttcccagttagttcgc
tctccaagcgtatactatagtggcaaagtggataaaaacggaaaacgtggttttactgct
actgtaattccaaaccgcggagcttggttagagtatgagacagatgctaaggatgttgta
tatgtgcgtattgaccgtacgcgtaaacttcctgtaactgttttgttacgcgcattaggg
tttggctctgatcaagaaatcaccgagcttttaggtgataacgaatacttaagcaacaca
ttagaaaaagacaacacagatagcacagaaaaagcattgcttgaaatttatgagcgtcta
cgccctggtgaaccaccaacagtagaaaatgctaagagcttacttgtgtctcgtttcttc
gatccaaagcgctacgatttagcaaatgtaggtcgctacaagatcaacaagaagttacac
attaaaaacagattgtttaatcaacgtttagctgaaacattagtagatccagaaactggt
gaaattttagcggcagaaggaacaatcttagatcgtcgtacacttgatcgcattttacct
tacttagagaaaaacattggattcaaaacagcgaaaccaatgggtggagtggtagaaggc
gatgttgagctgcaatctattaagatttatgctcctgagtcagaaggcgaacgtgtaatt
aatgtaattggtaatgcaaacattactcgtgatgtaaaacacatcacaccaggtgatatc
cttgcttctatcagttacttcttcaacctactatacaaagtaggggatacagatgatatc
gaccacttaggaaaccgtcgtctgcgttctgttggagaactattacaaaatcaattccgt
atcggtctttctcgtatggaacgtgttgttcgtgagagaatgtcgatccaagatacaaat
gcaattacaccacaggcattaattaatattcgtcctgttattgcatctattaaagagttc
ttcggaagttctcagttatctcagttcatggaccaaacaaacccattagcagagttaact
cacaaacgaagactatctgcattaggacctggtggtttaacgcgtgagcgcgcaggcttt
gaagtacgtgacgttcactactctcactatggtcgtatgtgtccgattgaaacaccagag
ggaccaaacatcggtttgattaactcattatcttcattcgcgaaagtaaatgagtttggt
ttcattgaaacaccataccgtcgtgttgacccagaaactggtcttgtaacagggcatgtt
gattatttaacagcagatgaagaagataattatgttgtagcccaagcgaatatgaaatta
tctgaagaaggagaattccttgatgaagatatcgtagctcgtttccgtggtgaaaacatt
gtcacaaataaagaacgcatcgactacatggatgtatcaccaaaacaagtagtgtcggca
gcgacagcttgtattccgttcttagaaaacgatgactctaaccgcgcacttatgggagcg
aacatgcaacgtcaggcggttccgttaatgaatccggaatcaccgattgtaggtacaggt
atggagtacgtatcagcaaaagactcaggtgctgcagtaatctgtaaacaccctggtatt
gttgaacgcgtagaagcacgtgaagtttgggtacgtcgctatgtagaagttgacggtcaa
acagtaaaaggcgacttagatcgctacaaaatgcaaaaattcattcgttctaaccaagga
acttgctacaaccaacgtccaatcgtaagtgttggaaatgaagttgtaaaaggtgaaatc
cttgcggatggtccttctatggaattaggtgaactagcacttggacgtaacgtgcttgtt
ggcttcatgacttgggacggttataactacgaggatgcgatcattatgagtgagcgcctt
gtaaaagatgatgtgtacacttctattcatattgaagaatatgagtcagaagctcgtgat
acgaagcttggaccagaagaaattacacgtgacattccaaacgttggggaagatgcatta
cgcaaccttgacgagcgcggtatcattcgcgttggtgcggaagtaaaagatggagattta
cttgttggtaaagtaacgcctaaaggtgtaacagaattaacagctgaagaacgtctatta
catgctatctttggagaaaaagcgcgtgaagtacgtgatacatcactacgtgtaccacac
ggtggtggcggtattatcttagacgtaaaagtattcaaccgtgaagatggcgatgaattg
ccaccaggcgtgaatcaacttgtacgtgcatatatcgttcaaaaacgtaaaatttctgaa
ggtgacaagatggccggacgtcacggtaacaaaggtgttatctctcgcattttaccagaa
gaagatatgccttacttaccagacggtacgccaatcgatatcatgttaaacccattaggg
gtaccatctcgtatgaatatcggtcaggtattagagcttcatcttggtatggcagcaaga
taccttggtattcacattgcaacaccagtattcgatggtgctcgtgaggaagatgtttgg
ggcacaattgaagaagctggtatggcaaatgacgcgaaaacaatcctgtatgacggacgt
actggtgaaccgttcgataaccgtgtatctgttggtgtcatgtatatgatcaaacttgcg
cacatggttgacgataaacttcatgctcgttctactggaccatactcacttgtaacgcag
cagcctcttggaggtaaagctcagttcggtggacagcgtttcggtgagatggaggtttgg
gcacttgaagcttacggtgctgcttatactcttcaagaaatcttaacagtgaagtctgat
gatgttgttggacgtgttaagacgtatgaagcaattgttaaaggcgaaaatgttccagaa
ccaggcgttcctgaatcattcaaagtattgattaaagagctgcaaagtttaggtatggac
gttaaaatgatgtctagcgacgatacagaaattgaaatgcgtgatacggaagatgacgat
gatcatcaatcagcagataaattgaatgtcgaagttgagacaactaaggaataa
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