Bordetella avium: BAV2329
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Entry
BAV2329 CDS
T00695
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor 70
KO
K03086
RNA polymerase primary sigma factor
Organism
bav
Bordetella avium
Pathway
bav02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
bav00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
BAV2329 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bav03021
]
BAV2329 (rpoD)
Transcription machinery [BR:
bav03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BAV2329 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
SPO22
GerE
TMPIT
DUF720
Motif
Other DBs
NCBI-ProteinID:
CAJ49939
UniProt:
Q2KYB3
LinkDB
All DBs
Position
complement(2507399..2509579)
Genome browser
AA seq
726 aa
AA seq
DB search
MAAEKTPAKTVVKVAKTATKTAAKKAAKPAAAAGEKTTKTRVKKAEDKLADLVGGAARVP
SGRRPGRPAKNANNDSDTFDDPMDGEGEVVPDFKPVKRGGKRGKGDPKDLIARGPVSPEE
YEARRNRLKQLIKLGKDRGYLTYGEINDHLPDDLVDAEAIDGIISTFSDMGISVYDQAPD
AETLLMSENAPVASNDDDVEDEAEAALTTVDSDFGRTTDPVRMYMREMGSVELLTREGEI
EIAKRIEDGLKHMVMAISACPTTINEILAHATRVREGQNQIDEVVDGLVDPEDGEEYAGA
GVSADEEEGDDGPAGGMSSKQLEDLRVKALAKFDEVSRQFDKMRNSYEKDGYRSDIYISA
QETIQNELMGIRFTAKMVEKLADTLRNQVEEVRQLERAVLHTCVDRAGMPRSHFLKVFPG
NETNLQWVVEEVAAGHPYAETLERQIPAVQELQQKLIDLQTRVVLPLKDLKDVNKRMATG
EAKARKAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFS
TYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQETGAEPDPATLAQKMD
MPEDKIRKILKIAKEPISMETPIGDDDDSHLGDFIEDTSTLAPSDAALHGSMRDVVKEVL
DSLTPREAKVLRMRFGIEMSTDQTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRADKLK
SFLEGQ
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggaaaaaacgcccgccaagacagtggtgaaggttgccaagaccgcaaccaaa
actgcggcgaaaaaagccgccaagccggctgcggccgcaggcgaaaagaccaccaagacc
cgtgtcaagaaggccgaggacaagctggccgatctggtgggcggcgccgcacgcgtgccc
agcggccgtcgtcctggccgtccggccaagaatgccaacaacgatagcgataccttcgat
gatccgatggacggcgaaggcgaagtcgtgcctgattttaaacccgtcaagcgtggcggc
aagcgcggcaaaggcgatcctaaagatctgatcgcccgtggccccgtgtcgcccgaagaa
tacgaggcccgccgtaatcgcctgaagcagctgatcaagctgggcaaggatcgcggctac
ctgacttacggcgaaatcaacgaccatttgcccgacgatctggtcgacgccgaagccatc
gacggcattatcagcaccttcagcgatatgggtatctcggtctatgaccaggcccctgat
gctgaaacgctgctcatgagcgagaacgcgccagtcgcttccaacgatgatgatgtcgag
gacgaggccgaggcggcgcttaccaccgttgattccgatttcggccgcaccaccgatccc
gtacgtatgtatatgcgcgaaatgggctcggtcgagttgctcacgcgcgaaggtgaaatc
gaaatcgccaagcgtatcgaagacggtctgaagcacatggtcatggccatctcggcatgt
ccgaccaccatcaacgaaatcctcgcccacgccacgcgtgtacgagaaggtcaaaaccag
atcgacgaagtcgtcgatggtctggttgacccggaagatggtgaagagtacgccggtgcc
ggtgtcagcgccgacgaagaggagggcgatgacggtccggctggcggcatgtcgagcaaa
cagctcgaagacctgcgcgtcaaggccctggccaagttcgacgaggtctcgcgccagttc
gacaagatgcgcaattcctacgaaaaggatggctatcgttcggatatctacatcagcgct
caggaaaccatccagaacgaactgatgggcattcgtttcacggccaaaatggtcgagaag
ctggctgacaccctgcgtaatcaagttgaagaagtgcgacagctcgaacgcgctgtgctg
cacacctgcgtggatcgcgcaggcatgccgcgctcgcacttcctcaaggtgttcccgggc
aacgaaaccaatttgcagtgggtcgtcgaagaagtggccgcaggccacccctacgctgaa
acccttgagcgtcagattccggccgtgcaagagttgcagcaaaagctgatcgacctgcaa
actcgcgtcgtgctgccgctgaaggatctcaaagacgtcaacaagcgcatggccacgggt
gaagccaaggctcgcaaggccaagcgcgaaatgactgaggccaacctgcgtctggtgatc
tctattgccaagaagtacaccaaccgcggtctgcagttcctggatcttatccaggaaggt
aatatcggtctgatgaaggcggtcgataagttcgaatatcgtcgcggctataaattctcg
acctatgcaacttggtggattcgccaggccattacccgttctatcgcggaccaggctcgc
accatccgtatcccggttcacatgatcgaaacgatcaacaagatgaaccggatcagccgt
cagattctgcaggaaaccggcgccgaacccgatcctgcgaccctggcgcagaagatggac
atgcccgaggacaagattcgcaagatcttgaagatcgccaaagagccgatctccatggaa
acgccgatcggcgacgatgatgattcccatctgggcgacttcatcgaagacacgtccacg
ctggcaccgtctgatgccgctttgcacggttccatgcgcgatgttgtgaaagaagtgcta
gactccctcaccccgcgtgaagccaaggttttgcgcatgcgtttcggtattgaaatgagc
accgatcaaacgctggaggaagtcggcaaacagtttgacgttacccgcgaacggattcgt
cagattgaagccaaggccttgcgcaagctgcgtcatcccagtcgcgcagacaagctcaag
agcttcctcgaagggcaataa
DBGET
integrated database retrieval system
