Bdellovibrio bacteriovorus HD100: Bd2984
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Entry
Bd2984 CDS
T00159
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase beta chain
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
bba
Bdellovibrio bacteriovorus HD100
Pathway
bba03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bba00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Bd2984 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bba03021
]
Bd2984 (rpoB)
03400 DNA repair and recombination proteins [BR:
bba03400
]
Bd2984 (rpoB)
Enzymes [BR:
bba01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Bd2984 (rpoB)
Transcription machinery [BR:
bba03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Bd2984 (rpoB)
DNA repair and recombination proteins [BR:
bba03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Bd2984 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
CAE80754
UniProt:
Q6MJ09
LinkDB
All DBs
Position
complement(2881208..2885476)
Genome browser
AA seq
1422 aa
AA seq
DB search
MGLGTFPPKRMSDFLITESTLEKTPVTASNIRVRKSFAKNKQVIDIPNLIELQKSSYEAF
IQKDMDPDRRGDAGLNGVFKSVFPITDFNNTASLEFVSYTLEPAKYDVDECRQRGMTFAA
PIKVTLRLIVFDVDEETEARSIRDVKEQEVYLGEIPLMTANGSFIINGTERVVVSQLHRS
PGVFFDHDGGKNNASGKLIYSARVIPYRGSWLDAEFDQKDLIHVRIDRRRKFPVTILLKA
LGYNSEQLLEYFYDLDEVYVKGGKLFRKLDIERMSGQRALTDIVDPKTGEALVKAGRRIT
RAIVKKIKDLDITELDVLPEDLEGKVLAKPLIDESTGEIIADANAELNAAIIKRSIEAGI
ESFFMIFFDGLTVGPYLRNTLLVDKVSNKEESLVEIYKRLRPGEPPTLEAATTFFGRLFF
DPETYDLSEVGRIKINHRFGISMDECPPSHRTLTHKDILSTIKTLIDLKNGRGVIDDIDH
LGNRRVRSVGELLENQYRIGLVRMERAIRERMSLQDVETMMPHDLVNAKPVNAVVKEFFG
SSQLSQFMDQTNPLSEITHKRRLSALGPGGLTRDRAGFEVRDVHPTHYGRICPIETPEGP
NIGLIASLATYARINNYGFIETPYRKVEAGQVSKDINYLSALEEAGHHIAPAARDEAGNK
AIQTATTITRRDGEYEIVDKDKVALMDVSPSQLVSIAASLIPFLEHDDANRALMGSNMQR
QAVPLLRSRAPLVGTGVERLVARDSGTSIVAQNDGIVEEVDASRIVIRRFAKGGELGANV
DIYNLTKYQRTNQNTCFNQKPIVTVGDKISKGDIIADGPSTELGELALGQNILVAFTPWQ
GYNFEDSILISERLLKDDVYTSIHIEEFECVARDTKLGKEEITRDIANVGEEALKDLDSS
GIIRIGAEVRPGFILVGKVTPKGETQLSPEEKLLRAIFGEKAGDVRDTSLRAPSGVYGTV
IDAQVYSREGADRDERLSLIIEEKKRKLEKDLAVEQNVIKNNAISKLRDILVGKITTGVL
LNEDGSQKLLNKGQEITEADLETVPFELLNYIPLEQDLEFQVNKIIDNARNQLDAVKLVF
NEKIDRLRKGDELPPGVIKMVKVYVAIKRKMQVGDKFAGRHGNKGVVSKVLPAEDMPYLA
DGTPVDMVLNPLGVPSRMNIGQILEVHLGWAAHNLGKQLGAHLEKWNAENARTEMKDIFS
DSDISAKLDKADDASLKSMVQRMKHGIHVGTPVFDGARESDVKGLLAKAQVPSSGKSVLF
DGRTGEPFTNPVTVGIMYMLKLHHLVEEKIHARSIGPYSLVSQQPLGGKAQFGGQRLGEM
EVWAIEAYGAAYSLQEFLTVKSDDVAGRTRMYESIVKGENILEPGLPESFNVLVKELQSL
ALNVELMESDILRDQDEDFGDEEVIEVEPVAPVASKDEPEQH
NT seq
4269 nt
NT seq
+upstream
nt +downstream
nt
gtgggccttggaacattccccccgaagcgaatgtccgattttcttatcacggagagtaca
ttggaaaaaactccagttacggcttctaacattcgagttagaaagtcattcgcgaaaaat
aagcaagtcattgatattccaaatctgattgaactgcagaagtcttcttacgaagctttc
attcaaaaagatatggatccagatcgtcgcggcgatgctggtcttaatggcgttttcaaa
tctgttttcccaatcacagatttcaacaatacagcaagccttgagtttgtatcttacact
ctagagccagctaagtacgacgtggacgagtgccgtcagcgtggtatgactttcgctgct
cctatcaaggtgactcttcgtctgatcgttttcgatgttgatgaagaaactgaagcacgc
agcatccgtgacgtgaaagagcaggaagtttatctgggcgaaatcccattgatgactgcc
aacggttctttcatcatcaacggtactgagcgcgttgttgtttcccagttgcacagatct
ccaggcgtgttcttcgatcacgatggtggtaaaaacaatgcttctggtaaattgatctac
tctgcacgtgtgatcccttatcgtggttcatggttggatgctgagtttgaccaaaaagat
cttatccacgtacgtatcgaccgtcgtcgtaagttcccagttacaatccttcttaaagct
cttggttacaactctgagcagcttctggaatacttctacgatcttgatgaagtttacgtt
aagggcggcaagctcttccgtaagttggacatcgagcgtatgtccggtcaaagagcattg
actgatatcgttgatccaaaaactggcgaagcgctggttaaagcgggtcgtcgtatcact
cgtgcgatcgttaagaaaatcaaagatcttgatatcacagagcttgatgttcttccggaa
gatctggaaggcaaagttctggcgaagccattgatcgatgaatccactggtgagatcatc
gctgatgcgaatgctgagctgaacgctgcaatcatcaagcgttccatcgaagctggtatc
gagagcttcttcatgatcttcttcgacggtttgactgtgggtccttacctgcgcaacacc
ctgttggttgataaagtctccaacaaagaagaatctttggttgagatctacaagcgtctt
cgtcctggtgagcctccgactttggaagcggctacgacattcttcggccgtttgttcttc
gatccagagacttatgacctttctgaagttggtcgtatcaagatcaatcacagattcggt
atctccatggacgagtgcccaccgtctcacagaacactgactcacaaggatatcctgagc
accatcaaaactttgatcgatctgaaaaatggtcgtggtgttatcgacgatatcgatcac
ttgggtaaccgtcgtgttcgttccgtaggtgagttgcttgaaaaccaataccgtatcggt
ttggttcgtatggagcgcgctatccgtgaacgtatgtcccttcaggacgttgaaacaatg
atgcctcacgatcttgtgaacgcgaaacctgtgaacgccgtagttaaagaattcttcggt
tcttcccagttgtctcagttcatggatcagacgaacccgctttccgagatcacgcacaaa
cgtcgtttgtctgctcttggacctggtggtttgactcgtgatcgcgctggtttcgaagta
cgtgacgtacatcctacgcactacggacgtatctgtcctatcgaaactccagagggtcca
aacatcggtttgatcgcttccttggctacttatgctcgtatcaacaactatggtttcatt
gagactccataccgtaaagttgaagcgggtcaggtttccaaagacatcaactatctttct
gcattggaagaagctggtcaccacatcgctccggcggctcgtgacgaagctggaaacaaa
gctatccagactgcgactaccatcactcgtcgtgacggtgagtatgagatcgtagacaag
gataaagttgctttgatggacgtttctccatctcagttggtttccatcgcagcttccctg
attccattccttgagcacgatgacgccaaccgtgccttgatgggatcgaacatgcaacgt
caagcggttccactgcttcgttctcgcgcaccacttgttggtacaggcgtagagcgtttg
gttgctcgtgactccggtacttccatcgttgctcaaaacgatggtatcgttgaggaagtt
gatgcttcccgtatcgttatccgtcgtttcgccaaaggcggcgagctgggtgcgaacgtg
gacatctacaacctgacgaagtatcagcgtacgaatcaaaatacgtgcttcaaccaaaaa
ccaatcgttactgttggtgacaagatttccaaaggcgacatcatcgctgacggtccttcc
actgagcttggtgaattggcattgggtcagaacatccttgtggcgttcaccccatggcaa
ggttacaacttcgaggactccatccttatttctgagcgtttgttgaaagacgacgtttac
acttccatccacatcgaagaattcgagtgcgtggctcgtgatacaaaacttggtaaggaa
gagatcactcgcgatatcgccaacgtaggtgaggaagctcttaaagacctggacagctct
ggtatcatccgcatcggtgcggaagttcgccctggcttcatcctggttggtaaagtgact
ccaaaaggtgaaactcagctttctcctgaggaaaaacttttgagagcgatcttcggtgaa
aaagccggcgacgttcgtgatacatctttgcgcgctccatccggcgtgtacggaactgtt
atcgatgctcaagtttactctcgtgaaggcgcagaccgcgatgagcgtttgtcgttgatc
atcgaagagaaaaaacgcaagcttgaaaaagacttggcggttgagcagaacgttatcaaa
aataacgctatctccaaacttcgtgacatcctggtgggtaaaatcactacaggcgttctt
ctgaatgaagacggttctcagaagttgttgaacaaaggtcaggaaatcacagaggcggat
ctagagacagttccattcgaattgttgaactacatccctcttgagcaagaccttgagttc
caggtgaacaaaatcatcgacaatgctcgtaaccagttggatgcagttaaacttgtgttc
aatgaaaagatcgatcgtcttcgtaaaggtgacgaattgcctccgggcgtgatcaaaatg
gttaaagtttacgttgctatcaaacgtaaaatgcaagtcggtgacaaattcgccggtcgt
cacggaaataagggtgttgtctccaaagtattgcctgcggaagacatgccttaccttgct
gacggtactccagtagacatggttctgaacccactaggggttccttctcgtatgaatatc
ggtcagatccttgaggttcacttgggttgggcagcgcacaaccttggtaaacaactgggt
gctcatcttgagaagtggaatgcagagaacgctcgcacagagatgaaagacatcttcagc
gactctgatatctccgcgaaacttgataaagcagacgatgcttcattgaagtccatggtt
cagcgcatgaagcacggtatccacgtgggtacgccggtgtttgatggtgcccgtgaatct
gacgtgaaaggtttgcttgcaaaagcgcaagtgccttcttccggtaagtccgttctattc
gacggtcgtacaggggagccgttcacgaatccggtaactgtcggtatcatgtacatgctg
aaacttcaccacttggtggaagagaagatccacgctcgttctatcggaccttactcactc
gtttctcaacagcctctgggcggtaaagctcagttcggtggtcagcgtctcggggagatg
gaggtttgggcgatcgaagcatacggtgctgcatactctctgcaagagttcctgactgtt
aagtcagatgacgttgcaggtagaactcgtatgtacgagagcatcgtgaagggtgaaaac
atccttgagccaggcttgcctgaatccttcaacgtattggtgaaagagcttcaatctctg
gcactgaacgtggagctgatggagtctgacattctacgtgaccaagatgaagattttggt
gacgaagaagtgatcgaggtagaaccagttgcgccggttgcgtctaaagacgaaccagag
cagcactaa
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integrated database retrieval system
