Brevibacillus borstelensis: RFB14_25455
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Entry
RFB14_25455 CDS
T09438
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
bbor
Brevibacillus borstelensis
Pathway
bbor03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bbor00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
RFB14_25455 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bbor03021
]
RFB14_25455 (rpoB)
03400 DNA repair and recombination proteins [BR:
bbor03400
]
RFB14_25455 (rpoB)
Enzymes [BR:
bbor01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RFB14_25455 (rpoB)
Transcription machinery [BR:
bbor03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RFB14_25455 (rpoB)
DNA repair and recombination proteins [BR:
bbor03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RFB14_25455 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
WNF05623
LinkDB
All DBs
Position
complement(5225432..5228971)
Genome browser
AA seq
1179 aa
AA seq
DB search
MAGKVIQSGRHRQRRTYSRINEVLGLPNLIEIQQKSYQWFLDEGLREMFQDISPIQDFTG
NLVLEFIDYSLGEPKYDVDESKERDVTYAAPLRVKVRLLNKETGEVKEQEVFMGDFPLMT
ETGTFIINGAERVIVSQLVRSPSVYYNTKVDKNGKQTFTATVIPNRGAWLELETDAKDVI
YVRIDRTRKIPVTVLLRALGFGSDIEILNLLGEDEYIKNTLEKDNTDSTEKALIEIYERL
RPGEPPTVENAKSLLISRFFDPKRYDLASVGRYKMNKKLHLKNRLYNQRLAETLVDTSTG
EIIAEAGQMIDRRILDRILPMLEESVGFVDVRTHGGVLEEDMIRLQSINIFSPLDDGKVI
KVIGNGNVDKTVKHITPADIVAAINYFMNLLHGVGSTDDIDHLGNRRLRSVGELLQNQFR
IGLSRMERVVRERMSIQDQNQITPQALINIRPVIAAIKEFFGSSQLSQFMDQTNPLAELT
HKRRLSALGPGGLTRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLINSLSSFARINDYG
FIETPRRKVDPETGYVLDEIAYLTADEEDVFNVAQANQPLDEMGRFINDMVICRRKGDIL
SVPRDKVDYMDVSPKQVVSVATALIPFLENDDANRALMGSNMQRQAVPLLIPQAPFVGTG
MEHKAAQDSGVAIVAKHPGQVERVTAREIWVRRYKEIDGKKVAGDIDKYKLHKFIRSNQG
TCINQRPIVRKGDWIEKGDIIGDGPSTEKGELALGRNVIVAFMTWEGYNYEDAILLSEKL
VKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALKNLDERGIVRVGAEIQDGDI
LVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGSGIVVDVKVFTRENGDEL
PPGVNQLVRVYIAQKRKISVGDKMAGRHGNKGVIARIMPEEDMPFLPDGSPVEIVLNPLG
VPSRMNIGQVLETHLGMAAKMLGIHVATPVFDGARQEDVFETLEEAGLDRDGKTILYDGR
TGEPFDRRVTVGCVYMLKLAHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVW
ALEAYGAAYTLQEILTVKSDDVVGRVKTYEAIVKGENVPEPGVPESFKVLIKELQSLGMD
VKILSEDEQEIEMREMEEEDEGSGEKLNLVLEGGSLDEE
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
ttggcaggtaaagtgattcaaagtggccgacaccgccagcgtcgtacgtattcgcgtatt
aacgaagtgctgggccttccaaatctgatcgagattcagcaaaagtcttaccagtggttc
ctggatgaaggcttgcgtgaaatgtttcaggacatttctccgatccaggactttacgggt
aaccttgtgctggaatttatcgattacagcctgggtgagcccaagtatgacgtggacgag
tcgaaagaacgtgacgtcacctatgcagcgcctctgcgcgtgaaggtccgcttgcttaac
aaagagacgggcgaagtgaaggaacaagaagtcttcatgggggacttcccgctcatgacc
gaaacgggaaccttcattattaacggggctgagcgtgtcattgtcagccagcttgttcgt
tcccccagtgtatattacaacaccaaagtggacaaaaacggcaagcaaacatttaccgct
accgttattccaaaccgtggcgcgtggttggagttggagacggacgcgaaggatgtcatt
tacgtccgtatcgaccgtacccggaagatcccggtaacggtgcttttgcgcgctctcggc
tttggttccgacatcgagattctcaacctgctgggtgaggacgagtatatcaaaaatacg
ctggagaaagacaataccgactctacggaaaaggcgctgattgaaatctatgagcgtctg
cgtccgggtgagccgccgacagtcgagaacgcgaagagcttgctcatttcccgtttcttc
gatccgaagcgctacgacctggcatccgttggtcgctataaaatgaacaagaagcttcac
ctgaaaaaccgtctctacaatcagcgtctggctgagacgttggtagatacgagcacaggt
gaaattatcgcagaagcaggtcaaatgattgaccgccggattcttgaccggattttgccg
atgctggaagagagcgtagggttcgtagatgtacggacgcacggcggtgttctcgaagag
gatatgatccgtctgcaatccatcaacatcttctctccgcttgacgacggcaaagtgatc
aaggtcatcggcaatggaaacgtcgataagaccgttaagcacatcacgcctgctgatatc
gttgcggcgatcaactatttcatgaacctgcttcatggagtcggttctaccgatgacatc
gaccatttgggcaaccgtcgtctgcgttccgttggtgagctgttgcagaaccagttccgc
atcggtctttcccgtatggagcgcgtagttcgcgagcggatgtccattcaggatcaaaac
cagatcacgccgcaagcgctgatcaacatccgtccggtcatcgcagcgatcaaggagttc
ttcggaagctcccagttgtcgcagtttatggatcagaccaacccgcttgcagagctgacg
cacaaacgccgtctgtctgcactcggtcccggtggtttgactcgtgagcgcgcgggcttt
gaagtgcgtgacgttcaccactctcactacggccgtatgtgtccgattgagacgccggag
ggtccgaacatcggtttgatcaactcgctgtcttcctttgcccggatcaatgactatgga
ttcattgaaacgccgcgtcgcaaggtagacccggagaccggttacgttctggatgaaatc
gcctatctgacggcggatgaagaagacgtgttcaacgtcgctcaggccaaccagcctttg
gacgaaatgggccgcttcatcaacgacatggttatttgccgacgcaagggcgacatcttg
agtgtcccgcgcgacaaggttgactatatggacgtatctccgaagcaagtcgtttcggtt
gcgaccgctttgattccgttcctggaaaacgacgacgccaaccgcgcgctgatgggttcc
aacatgcagcggcaggctgttccattgctcattccgcaagcgccgtttgtcggtaccggt
atggagcataaagcagcgcaagactccggcgtggcgatcgttgccaagcatccgggtcag
gtagagcgcgtgacagcccgcgaaatttgggtacgccgctataaagagatcgacggcaag
aaagtagccggcgatatcgacaaatacaaattgcacaagtttatccgttccaaccagggt
acctgcatcaaccagcgcccaatcgtcagaaaaggcgactggattgaaaaaggcgacatc
atcggtgacggtccgtccacagaaaagggcgaattggcactgggccgcaacgttatcgtt
gcgttcatgacctgggaagggtacaactacgaggacgccattctcctcagcgaaaagctt
gtaaaagatgacgtgtatacgtctatccatattgaagagtacgagtccgaagcccgtgac
accaagctcggtccggaagaaatcacccgtgatattccgaacgtcggcgaagacgctctg
aaaaatcttgacgagcgcggtatcgttcgcgtcggtgcggaaattcaggacggcgacatc
ctcgtcggtaaagtaacgccgaaaggggttaccgagctgacggcggaagagcgtttgctc
catgccatctttggtgaaaaggcacgcgaggttcgcgacacatccttgcgcgtaccgcat
ggcggttccggtatcgttgtcgacgtgaaagtgtttacccgcgagaacggcgacgagctg
ccgccgggtgtcaaccaactcgtccgcgtctacatcgcccaaaaaaggaaaatttccgtg
ggtgacaaaatggccggtcgacatggtaacaaaggggttattgcccggatcatgccagag
gaggatatgccgttcttgccggatggctctcctgtggaaatcgttctgaacccactcggg
gttccgtcccggatgaacatcggtcaggtactggaaacgcaccttggcatggcggcgaaa
atgctcggcatccacgtagcgacaccggtatttgacggagctcgtcaggaagatgtgttc
gagacgctggaagaagccggcctcgaccgcgacggaaaaacgattttgtacgatggccgc
acaggtgaaccgtttgaccgccgtgtaacggtaggttgcgtgtacatgctgaagctggct
cacttggtggacgacaagatccacgctcgttccactggtccatactcgctcgttacgcag
cagcctctgggcggtaaagctcagtttggcggacagcgcttcggggagatggaggtttgg
gcactcgaggcttatggtgccgcctatacgctgcaagaaattcttactgtcaagtcggac
gacgtcgttggtcgggtgaagacctacgaagcgatcgtcaaaggggaaaacgtaccggag
ccaggtgttcctgagtccttcaaggttctcatcaaggaactgcaaagcttgggtatggac
gtgaaaatcctgtccgaagacgagcaggaaattgaaatgcgtgaaatggaagaagaggac
gagggcagcggtgaaaagctgaatctcgtacttgaaggcggaagcttggacgaagagtaa
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