Bifidobacterium breve JCM 7019: B7019_0452
Help
Entry
B7019_0452 CDS
T03121
Name
(GenBank) DNA-directed RNA polymerase beta chain
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
bbrc
Bifidobacterium breve JCM 7019
Pathway
bbrc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bbrc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
B7019_0452
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bbrc03021
]
B7019_0452
03400 DNA repair and recombination proteins [BR:
bbrc03400
]
B7019_0452
Enzymes [BR:
bbrc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
B7019_0452
Transcription machinery [BR:
bbrc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
B7019_0452
DNA repair and recombination proteins [BR:
bbrc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
B7019_0452
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
DUF5887
mTERF
Motif
Other DBs
NCBI-ProteinID:
AHJ18761
LinkDB
All DBs
Position
542397..545960
Genome browser
AA seq
1187 aa
AA seq
DB search
MATESTTNTTTIIARADQHDIDLHKASDRVNFGSIKEPIDVPYLLGVQTDSFDWLIGNER
WKARVEEDEKNGTNTVAHTSGLDEVFNEISPIENFAQTMSLTFSDPYFEEPRHTVQECKE
KDYTYSAPLYVNAEFENGDTGEIKSQTVFMGDFPLQTPHGTFIIGGTERVIVSQLVRSPG
VYFDRQQDRTSDKEVFGAKIIPSRGAWLEFEVDKKDQPQVRVDRKRKQSAIVFLMAIGMT
KSEIAKAFKDYPLVLDALEKETLETQDEALVDLYRKIRPADTPTPEAGKNLLDSFYFNTK
RYDLARVGRYKINRKLGVEADFNDRSLHQEDIIATIKYLVALHDGAATFPGKRNGEDVDL
RVDVDDIDHFGNRRIRQVGELVQNQLRTGLSRMERVVRERMTTQDAEAITPQSLINIRPV
NATIKEFFGTSQLSQFMDQNNPLSGVTNKRRLSALGPGGLSRDRASMEVRDVHPSHFGRM
CPIESPEGPNIGLIGSLATFGRVNPFGFIETPYRKVVNGHVTDEVEYMTADRDLDHVIAQ
ANQELDENGNFVSKSALARVGEEEAVDVPVSSVDYMDVSPRQMVSLGASLIPFLEHDEGH
RALMGTNMQRQAVPLIESERPLVGTGSEWRAANDSGDVIKADKDGVVTYVSADLIRVMND
DGTTSSYKLAKFQRSNQTTCYNQRPIIHDGERVEAGSVLADGPAIQKGDLALGKNLLIAF
MPWNGYNYEDAVIISQRLVQDDTLSSIHIEEYEIDARETKLGAEEITRDLPNVGEDAVAN
LDERGIIRIGAEVEAGDILVGKVTPKGETELTPEERLLRAIFGEKSREVRDTSLRVPHGE
TGTVIGVKEITREDAEEDGDELPNGVNQMIRVYIAQHRKITVGDKLSGRHGNKGCISRIL
PEEDMPFLADGTPVDIMLNPLGVPSRMNLGQVLELHLGWIAHSGWDISLDPNLEAEWKKL
IPSGAEKAEPNTPVATPVFDGVKPEVLRGLLSTTLPNRDGDRLVGPDGKATLFDGRTGEP
YTKQISVGYMYMLKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEA
YGAAYTLHEMMTTKSDDVDGRVRVYGAIVKGDNLPPAGIPESFKVLLKEMQSLSLNVEVL
NAEGVAIDMKDEEDDPVSSADDLGFNIGARPDAAAKEDQKAEEPEYQ
NT seq
3564 nt
NT seq
+upstream
nt +downstream
nt
ttggctactgagtctacgacgaacaccaccaccatcatcgcacgcgccgaccagcatgat
attgacctgcacaaggcgtcggatcgcgtgaacttcggttccatcaaggaacccatcgat
gtgccctacctgctgggcgtgcagaccgacagcttcgattggctgatcggcaacgaacgc
tggaaggcgcgcgtcgaggaggacgaaaagaacggcactaacaccgtggcccacacctcc
ggtctcgatgaggtcttcaacgagatctctccgatcgagaacttcgctcagaccatgagc
ctgaccttctccgatccgtacttcgaagagccgcgtcacaccgtgcaggaatgcaaggag
aaggattacacctactccgcaccgctgtacgtgaacgccgagttcgagaacggcgacacc
ggcgagatcaagtcccagaccgtgttcatgggcgacttcccgctgcagaccccgcacggc
acctttatcatcggcggcaccgagcgagtcatcgtctcccagctcgtgcgctccccgggc
gtctacttcgatcgtcagcaggaccgtacttccgacaaggaagtcttcggcgcgaagatt
atcccgtcccgcggcgcatggcttgagttcgaggtcgataagaaggaccagccgcaggtg
cgcgtggaccgcaagcgcaagcagtccgccatagtgttcctcatggccatcggcatgacc
aagtccgagatcgccaaggccttcaaggactacccgctggtgctcgatgcactcgagaag
gaaaccctcgagacccaggacgaggctcttgttgacctctaccgcaagattcgtccggct
gacaccccgacccccgaggccggcaagaacctgctggactccttctacttcaacaccaag
cgttacgatctggcccgcgtcggccgttacaagatcaaccgcaagctgggtgttgaggcc
gacttcaacgaccgttccctccaccaggaggacatcatcgccaccatcaagtacttggtg
gccctgcacgatggtgctgcgaccttcccgggcaagcgcaacggcgaagatgtcgacctg
cgcgtggacgttgacgatatcgaccacttcggcaaccgtcgtatccgtcaggtcggtgag
ctggtccagaaccagctgcgtaccggtctgtcccgtatggagcgcgtggtacgcgagcgt
atgaccactcaggacgccgaggccatcaccccgcagtccctgatcaacatccgtccggtg
aacgccaccatcaaggagttcttcggcacctcccagctctcccagttcatggaccagaac
aacccgctgtccggtgtgacgaacaagcgtcgtctctccgctttgggccccggtggtctg
tcccgcgaccgcgcctccatggaggtccgcgacgtgcacccgtcccactttggccgtatg
tgcccgatcgagtctcctgaaggcccgaacatcggtctgattggttctctggcaaccttc
ggccgcgtcaacccgttcggcttcatcgagaccccgtaccgcaaggtcgtcaacggccac
gtgaccgacgaggtcgagtacatgaccgctgaccgtgatctcgaccacgtcatcgcccag
gccaaccaggaacttgacgagaacggcaacttcgtctccaagtccgcccttgcccgagtc
ggcgaggaagaggcagtcgatgtgccggtgagctccgtggattacatggatgtctccccg
cgtcagatggtctccctcggtgcctccctgattccgttcctggagcatgatgagggccac
cgtgcactgatgggtaccaacatgcagcgtcaggccgtgccgctgatcgaatccgagcgc
ccgctggtgggtaccggttccgaatggcgcgccgccaacgattccggcgacgtcatcaag
gccgacaaagacggtgtggtcacctacgtgtccgccgacctgatccgtgtgatgaacgac
gacggcaccaccagctcctacaagctggctaagttccagcgttccaaccagaccacctgc
tacaatcagcgcccgatcatccacgatggcgagcgtgtggaggccggctcggtgctggcc
gatggtcctgccatccagaagggcgacctggccctaggcaagaacctgctcattgccttc
atgccgtggaacggctacaactacgaggatgctgtgatcatctcccagcgcctcgtgcag
gacgacaccctctcctccatccacatcgaggagtacgagattgacgcccgcgaaaccaag
ctgggcgccgaagagattacccgcgacctgccgaacgtcggcgaggacgctgtggccaac
cttgatgagcgcggcatcatccgcatcggcgccgaggtcgaggccggcgacattctggtc
ggtaaggtcaccccgaagggcgagaccgagctgaccccggaggagcgcctgctgcgcgcc
atcttcggcgagaagtcccgcgaggttcgtgacacctccctgcgtgtgccccacggcgag
accggtacggtcatcggcgtcaaggagattacccgcgaggatgccgaggaggacggcgac
gagctgcccaacggcgtcaaccagatgatccgcgtctacatcgcccagcaccgtaagatc
acggtgggcgacaagctctccggccgccacggcaacaagggctgcatctctcgcatcctg
ccagaagaggatatgccgttccttgccgacggtactccggtcgacatcatgttgaacccg
ctgggtgtgccttcccgaatgaacctcggtcaggtgcttgagctgcacctcggctggatt
gctcactccggttgggacatctctttggatccgaatctggaagccgagtggaagaagctg
attccgtccggtgccgagaaggccgagccgaacaccccggtcgccaccccggtgttcgac
ggtgtcaagccggaagtcctgaggggtctgctgtccaccacgctgccgaaccgtgacggc
gaccgtctcgtgggccccgacggcaaggcgaccctgtttgatggtcgtaccggtgagccg
tacaccaagcagatttccgtgggctacatgtacatgctgaagctgcaccacctggtcgac
gacaagattcacgcccgctccaccggcccgtactccatgatcacccagcagccgctcggt
ggtaaggcccagttcggtggccagcgcttcggcgagatggaggtgtgggcccttgaggcc
tacggtgccgcctacacgctgcacgaaatgatgaccaccaaatccgatgacgttgacggc
cgcgtgcgcgtctacggtgccatcgtcaagggcgataacctgccgccggcaggtatccct
gagtcgttcaaggtgctcctgaaggaaatgcagtccctgtccctgaacgtcgaggtgctc
aacgccgaaggcgtggccatcgacatgaaggacgaggaagacgatccggtgagttccgcc
gacgatctcggcttcaacattggtgcccgccccgacgcggccgccaaggaagaccagaag
gccgaagaacccgaataccagtga
DBGET
integrated database retrieval system
