Bifidobacterium breve NCFB 2258: B2258_0451
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Entry
B2258_0451 CDS
T03122
Name
(GenBank) DNA-directed RNA polymerase beta chain
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
bbrn
Bifidobacterium breve NCFB 2258
Pathway
bbrn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bbrn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
B2258_0451
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bbrn03021
]
B2258_0451
03400 DNA repair and recombination proteins [BR:
bbrn03400
]
B2258_0451
Enzymes [BR:
bbrn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
B2258_0451
Transcription machinery [BR:
bbrn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
B2258_0451
DNA repair and recombination proteins [BR:
bbrn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
B2258_0451
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
DUF5887
mTERF
Motif
Other DBs
NCBI-ProteinID:
AHJ20677
LinkDB
All DBs
Position
562095..565658
Genome browser
AA seq
1187 aa
AA seq
DB search
MATESTTNTTTIIARADQHDIDLHKASDRVNFGSIKEPIDVPYLLGVQTDSFDWLIGNER
WKARVEEDEKNGTNTVAHTSGLDEVFNEISPIENFAQTMSLTFSDPYFEEPRHTVQECKE
KDYTYSAPLYVNAEFENGDTGEIKSQTVFMGDFPLQTPHGTFIIGGTERVIVSQLVRSPG
VYFDRQQDRTSDKEVFGAKIIPSRGAWLEFEVDKKDQPQVRVDRKRKQSAIVFLMAIGMT
KSEIAKAFKDYPLVLDALEKETLETQDEALVDLYRKIRPADTPTPEAGKNLLDSFYFNTK
RYDLARVGRYKINRKLGVEADFNDRSLHQEDIIATIKYLVALHDGAATFPGKRNGEDVDL
RVDVDDIDHFGNRRIRQVGELVQNQLRTGLSRMERVVRERMTTQDAEAITPQSLINIRPV
NATIKEFFGTSQLSQFMDQNNPLSGVTNKRRLSALGPGGLSRDRASMEVRDVHPSHFGRM
CPIESPEGPNIGLIGSLATFGRVNPFGFIETPYRKVVNGHVTDEVEYMTADRDLDHVIAQ
ANQELDENGNFVSKSALARVGEEEAVDVPVSSVDYMDVSPRQMVSLGASLIPFLEHDEGH
RALMGTNMQRQAVPLIESERPLVGTGSEWRAANDSGDVIKADKDGVVTYVSADLIRVMND
DGTTSSYKLAKFQRSNQTTCYNQRPIIHDGERVEAGSVLADGPAIQKGDLALGKNLLIAF
MPWNGYNYEDAVIISQRLVQDDTLSSIHIEEYEIDARETKLGAEEITRDLPNVGEDAVAN
LDERGIIRIGAEVEAGDILVGKVTPKGETELTPEERLLRAIFGEKSREVRDTSLRVPHGE
TGTVIGVKEITREDAEEDGDELPNGVNQMIRVYIAQHRKITVGDKLSGRHGNKGCISRIL
PEEDMPFLADGTPVDIMLNPLGVPSRMNLGQVLELHLGWIAHSGWDISLDPNLEAEWKKL
IPSGAEKAEPNTPVATPVFDGVKPEVLRGLLSTTLPNRDGDRLVGPDGKATLFDGRTGEP
YTKQISVGYMYMLKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEA
YGAAYTLHEMMTTKSDDVDGRVRVYGAIVKGDNLPPAGIPESFKVLLKEMQSLSLNVEVL
NAEGVAIDMKDEEDDPVSSADDLGFNIGARPDAAAKEDQKAEEPEYQ
NT seq
3564 nt
NT seq
+upstream
nt +downstream
nt
ttggctactgagtctacgacgaacaccaccaccatcatcgcacgcgccgaccagcatgat
attgacctgcacaaggcgtcggatcgcgtgaacttcggttccatcaaggaacccatcgat
gtgccctacctgctgggcgtgcagaccgacagcttcgattggctgatcggcaacgaacgc
tggaaggcgcgcgtcgaggaggacgaaaagaacggcactaacaccgtggcccacacctcc
ggcctcgatgaggtcttcaacgagatctctccgatcgagaacttcgctcagaccatgagc
ctgaccttctccgatccgtacttcgaagagccgcgtcacaccgtgcaggaatgcaaggag
aaggattacacctactccgcaccgctgtacgtgaacgccgagttcgagaacggcgacacc
ggcgagatcaagtcccagaccgtgttcatgggcgacttcccgctgcagaccccgcacggc
acctttatcatcggcggcaccgagcgagtcatcgtctcccagcttgtgcgctccccgggc
gtctacttcgatcgtcagcaggaccgtacttccgacaaggaagtcttcggcgcgaagatt
atcccgtcccgcggcgcatggcttgagttcgaggtcgataagaaggaccagccgcaggtg
cgcgtggaccgcaagcgcaagcagtccgccatcgtgttcctcatggccatcggcatgacc
aagtccgagatcgccaaggccttcaaggactacccgctggtgctcgatgcactcgagaag
gaaaccctcgagacccaggacgaggcccttgttgacctctaccgcaagattcgtccggct
gacaccccgacccccgaggccggcaagaacctgctggactccttctacttcaacaccaag
cgttacgatctggcccgcgtcggccgttacaagatcaaccgcaagctgggcgttgaggcc
gacttcaacgaccgttccctccaccaggaggacatcatcgccaccatcaagtacttggtg
gccctgcacgatggtgctgcgaccttcccgggcaagcgcaacggcgaagatgttgacctg
cgcgtggacgttgacgatatcgaccacttcggcaaccgtcgtatccgtcaggtcggtgag
ctggtccagaaccagctgcgtaccggtctgtcccgtatggagcgcgtggtacgcgagcgt
atgaccactcaggacgccgaggccatcaccccgcagtccctgatcaacatccgcccggtg
aacgccaccatcaaggagttcttcggcacctcccagctctcccagttcatggaccagaac
aacccgctgtccggtgtgacgaacaagcgtcgtctctccgctttgggccctggcggtctg
tcccgcgatcgcgcctccatggaggtccgcgacgtgcacccgtcccactttggccgtatg
tgcccgatcgagtctcctgaaggcccgaacatcggtctgattggttctctggcaaccttc
ggccgcgtcaacccgttcggcttcatcgagaccccgtaccgcaaggtcgtcaacggccac
gtgaccgacgaggtcgagtacatgaccgctgaccgtgatctcgaccacgtcatcgcccag
gccaaccaggaacttgacgagaacggcaacttcgtctccaagtccgcccttgcccgagtc
ggcgaggaagaggcagtcgatgtgccggtgagctccgtggattacatggatgtctccccg
cgtcagatggtctccctcggtgcctccctgattccgttcctggagcatgatgagggccac
cgtgcactgatgggtaccaacatgcagcgtcaggccgtgccgctgatcgaatccgagcgc
ccgctggtgggtaccggttccgaatggcgcgccgccaacgattccggcgacgtcatcaag
gccgacaaagacggtgtggtcacctacgtgtccgccgacctgatccgtgtgatgaacgac
gacggcaccaccagctcctacaagctggctaagttccagcgttccaaccagaccacctgc
tacaatcagcgcccgatcatccacgatggcgagcgtgtggaggccggctcggtgctggcc
gatggtcctgccatccagaagggcgacctggccctaggcaagaacctgctcatcgccttc
atgccgtggaacggctacaactacgaggatgctgtgatcatctcccagcgcctcgtgcag
gacgacactctctcctccatccacatcgaggagtacgagattgacgcccgcgaaaccaag
ctgggcgccgaagagattacccgcgacctgccgaacgtcggcgaggacgctgtggccaac
cttgatgagcgcggcatcatccgcatcggcgccgaggtcgaggccggcgacattctggtc
ggtaaggtcaccccgaagggtgagaccgagctgaccccggaggagcgcctgctgcgcgcc
atcttcggcgagaagtcccgcgaggtgcgtgacacctccctgcgtgtgccccacggcgag
accggtacggtcatcggcgtcaaggagattacccgcgaggatgccgaggaggacggcgac
gagctgcccaacggcgtcaaccagatgatccgcgtctacatcgcccagcaccgtaagatc
acggtgggcgacaagctctccggccgccatggcaacaagggctgcatctcccgcatcctg
ccggaagaggatatgccgttccttgccgacggtactccggtcgacatcatgttgaacccg
ctgggtgtgccttcccgaatgaacctcggtcaggtgcttgagctgcacctcggctggatt
gctcactccggttgggacatctctttggatccgaatctggaagccgagtggaagaagctg
attccgtccggtgccgagaaggccgagccgaacaccccggtcgccaccccggtgttcgac
ggtgtcaagccggaagtcctgaggggtctgctgtccaccacgctgccgaaccgtgacggc
gaccgtctcgtgggccccgacggcaaggcgactctgttcgacggccgcaccggtgagccg
tacaccaagcagatttccgtgggctacatgtacatgctgaagctgcaccacctggtcgac
gacaagattcacgcccgctccaccggcccgtactccatgatcacccagcagccgctcggt
ggtaaggcccagttcggtggccagcgcttcggcgagatggaggtgtgggccctcgaggcc
tacggtgccgcctacacgctgcacgaaatgatgaccaccaaatccgatgacgtcgacggc
cgcgtgcgcgtctacggcgccatcgtcaagggcgataacctgccgccggcaggcatccct
gagtcgttcaaggtgctcctgaaggaaatgcagtccctgtccctgaacgtcgaggtgctc
aacgccgaaggcgtggccatcgacatgaaggatgaggaagacgatccggtgagttccgcc
gacgatctcggcttcaacattggtgcccgccccgacgcggccgccaaggaagaccagaag
gccgaagaacccgaataccagtga
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