Bubalus bubalis (water buffalo): 102398381
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Entry
102398381 CDS
T05912
Symbol
CLP1
Name
(RefSeq) polyribonucleotide 5'-hydroxyl-kinase Clp1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
bbub
Bubalus bubalis (water buffalo)
Pathway
bbub03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bbub00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
102398381 (CLP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbub03019
]
102398381 (CLP1)
Enzymes [BR:
bbub01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
102398381 (CLP1)
Messenger RNA biogenesis [BR:
bbub03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
102398381 (CLP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
CLP1_N
Clp1
AAA_18
TniB
ATP_bind_1
MMR_HSR1
AAA_16
AAA_22
nSTAND3
CbiA
Motif
Other DBs
NCBI-GeneID:
102398381
NCBI-ProteinID:
XP_044785028
LinkDB
All DBs
Position
16:complement(3111229..3114527)
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AA seq
425 aa
AA seq
DB search
MGEEANDDKKPTTKFELERETELRFEVEASQSVQLELLAGMAEIFGTELTRNKKFTFDAG
AKVAVFTWHGCSLQLSGRTEVAYVSKDTPMLLYLNTHTALEQMRRQAEKEEERGPRVMVV
GPTDVGKSTVCRLLLNYAVRLGRRPTYVELDVGQGSVSIPGTMGALYIERPADVEEGFSI
QAPLVYHFGSTTPGTNIKLYNKITSRLADVFNQRCEVNRRASVSGCVINTCGWVKGSGYQ
ALVHAASAFEVDVVVVLDQERLYNELKRDLPHFVRTVLLPKSGGVVERSKDFRRECRDER
IREYFYGFRGCFYPHAFNVKFSDVKIYKVGAPTIPDSCLPLGMSQEDNQLKLVPVTPGRD
MVHHLLSVSTAEGTEENLSETSVAGFIVVTSVDLEHQVFTVLSPAPRPLPKNFLLIMDIR
FMDLK
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atgggagaggaggccaatgatgacaagaagccaacaactaaatttgaactggagcgggag
acagagcttcgctttgaggtggaggcgtcgcagtcagttcagttggagctgctggccggc
atggcagaaatcttcggcacagagctgacccgaaacaagaagttcacctttgatgccggc
gccaaggtggctgtcttcacttggcacggctgttcgctgcagctcagtggccgcaccgag
gtggcttacgtctccaaggacaccccgatgttgctttatctcaacacgcatacggccttg
gagcagatgcggaggcaggcagagaaggaggaggagcgaggcccccgggtgatggtcgtg
ggccccacggacgtgggcaagtccaccgtgtgccgtctgctgctcaactacgcggtgcgt
ttgggccgcaggcccacgtacgtggagctggatgtgggccagggctctgtgtccatcccc
ggcaccatgggggccctgtacattgagcggccggcggacgttgaggaggggttctccatc
caggccccgctggtgtaccacttcggctccaccacgcctggcaccaacatcaagctttat
aataagattacatctcgtttagccgatgtgttcaaccagaggtgtgaagtgaaccgcagg
gcctcggtgagcggctgtgtcattaacacctgtggctgggtcaagggctctggttaccag
gccctggtccatgcagcctcagcctttgaggtggatgtcgttgtggttctggatcaagaa
cggctgtataacgaactgaaacgggacctgcctcacttcgtccgcacggtgctgctcccc
aagtcggggggtgtggtggagcgctctaaggacttccggcgggaatgccgggatgagcgc
atccgtgagtatttctatgggttccggggctgtttctatccccatgccttcaacgtcaaa
ttttcagatgtgaaaatctacaaagtcggggcacccaccatcccagactcttgcctgcct
ctgggcatgtctcaggaagataatcagctcaagctggtgcctgtcacccccggccgagat
atggtgcaccacctgctgagcgtcagcacggcggagggcacggaggagaacctctccgag
accagcgtggcgggcttcatcgtggtgaccagtgtggacctggagcaccaggtgttcacc
gttctctctccggccccccgcccgctgcccaagaacttccttctcatcatggatatccgg
ttcatggatcttaagtag
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