KEGG   Bubalus bubalis (water buffalo): 102410430
Entry
102410430         CDS       T05912                                 
Symbol
SMNDC1
Name
(RefSeq) survival of motor neuron-related-splicing factor 30 isoform X1
  KO
K12839  survival of motor neuron-related-splicing factor 30
Organism
bbub  Bubalus bubalis (water buffalo)
Pathway
bbub03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:bbub00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    102410430 (SMNDC1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:bbub03041]
    102410430 (SMNDC1)
Spliceosome [BR:bbub03041]
 Complex A
  U2 snRNP components
   U2 related factors
    102410430 (SMNDC1)
 Complex B
    102410430 (SMNDC1)
 Other splicing related proteins
  Proteins involved in snRNP biogenesis
   Other proteins involved in snRNP biogenesis
    102410430 (SMNDC1)
SSDB
Motif
Pfam: SMN_Tudor TUDOR
Other DBs
NCBI-GeneID: 102410430
NCBI-ProteinID: XP_006043984
EnsemblRapid: ENSBBUG00015025348
LinkDB
Position
23:complement(30875519..30886773)
AA seq 238 aa
MSEDLAKQLASYKAQLQQVEAALSGNGENEDLLKLKKDLQEVIELTKDLLSTQPSETLAS
SDSFASTQPTHSWKVGDKCMAIWSEDGQCYEAEIEEIDEENGTAAITFAGYGNAEVTPLL
NLKPVEEGRKAKEDSGNKPMSKKEMIAQQREYKKKKALKKAQRIKELEQEREDQKVKWQQ
FNNRAYSKNKKGQVKRSIFASPESVTGKVGVGTCGIADKPMTQYQDTSKYNVRHLMPQ
NT seq 717 nt   +upstreamnt  +downstreamnt
atgtcagaggatctagcaaagcagctggcaagctacaaagctcaactccagcaagttgag
gctgcgctgtctggaaatggagaaaatgaagatttactaaaattaaagaaagatttacaa
gaggttattgaactaaccaaagaccttctgtcaactcagccttctgaaactctggcaagt
tcagacagctttgcttctactcagcccactcattcatggaaagtaggagacaagtgtatg
gcaatctggagtgaagatggacagtgttatgaagcggagattgaggagatagatgaggaa
aacggcaccgctgcaatcacttttgctggctatggcaatgctgaagtgactccactgttg
aacctcaagcctgtagaagaaggaaggaaggcaaaggaggacagcggcaacaaacccatg
tcaaaaaaagaaatgattgcccagcagcgtgaatataaaaagaagaaagctttgaagaaa
gcacagagaataaaagaacttgaacaagaaagagaggaccagaaggtaaaatggcaacag
ttcaacaacagagcctattctaaaaacaaaaaaggccaggtaaagaggagtatttttgct
tcacccgagagtgtaactggcaaagttggagtaggaacttgtggaattgctgataaacct
atgacacagtatcaagatacctctaaatacaatgttaggcatttgatgcctcaataa

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