Bubalus bubalis (water buffalo): 102412468
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Entry
102412468 CDS
T05912
Symbol
XRN1
Name
(RefSeq) 5'-3' exoribonuclease 1 isoform X1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
bbub
Bubalus bubalis (water buffalo)
Pathway
bbub03008
Ribosome biogenesis in eukaryotes
bbub03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bbub00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
102412468 (XRN1)
09123 Folding, sorting and degradation
03018 RNA degradation
102412468 (XRN1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bbub03019
]
102412468 (XRN1)
03009 Ribosome biogenesis [BR:
bbub03009
]
102412468 (XRN1)
03016 Transfer RNA biogenesis [BR:
bbub03016
]
102412468 (XRN1)
03036 Chromosome and associated proteins [BR:
bbub03036
]
102412468 (XRN1)
Messenger RNA biogenesis [BR:
bbub03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
102412468 (XRN1)
mRNA degradation factors
5'-3' decay
5' exonucleases
102412468 (XRN1)
Ribosome biogenesis [BR:
bbub03009
]
Eukaryotic type
Pre-60S particles
RNases
102412468 (XRN1)
Transfer RNA biogenesis [BR:
bbub03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
102412468 (XRN1)
Chromosome and associated proteins [BR:
bbub03036
]
Eukaryotic type
Gene silencing
piRNA pathway
102412468 (XRN1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
Dicer_dimer
Motif
Other DBs
NCBI-GeneID:
102412468
NCBI-ProteinID:
XP_006078071
LinkDB
All DBs
Position
1:171492387..171608019
Genome browser
AA seq
1740 aa
AA seq
DB search
MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNGIIHQCSHPNDDDVHFRISDDKI
FTDIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEEKIKKAIEKGE
TLPAEARFDSNCITPGTEFMARLHEHLKYFVNMKISTDKSWQGVTIYFSGHETPGEGEHK
IMEFIRSEKAKPDHDPNTRHCLYGLDADLIMLGLTSHEAHFSLLREEVRFGGKKTQRVCA
PEETTFHLLHLSLMREYIDYEFSALKDKITFKYDIERIIDDWILMGFLVGNDFIPHLPHL
HINHDALPLLYGTYITILPELGGYINESGHLNLPRFEKYLVKLSDFDREHFSEVFVDLKW
FESKVGNKYLNEAAGVAAEEAKSYKEKKKSKGQENSICWAALDKNGEEVVTSKDNVEEEM
EDDDLFETEFRQYKRTYYMTKMGVDVVSDDFLADQAACYVQAIQWILHYYYHGVQSWSWF
YPYHYAPFLSDIRNISTLKIHFELGKPFKPFEQLLAVLPAASKNLLPACYQHLMTSDDSP
IIEYYPPDFKTDLNGKQQEWEAVVLIPFIDEKRLLEAMETCNHSLKKEERKRNQHSECLM
CWFDSDTEFTYPSPWPEKFPPVERCCARYKIISLDAWRIDISKNNITKVDQKALYFCGFP
TLKHIKHKFFLKKSGVQVFQQSSRGENMMLEILVNAESDELSVENIASSVLGKSVFVNWP
HLEEARVVGVSDGETKFYLEEPPGTQKLYLGRTAPPSKVVHLGDKEQCNWTKEVQGISEY
YLRRKGIIINETSAVVYGQLLTGRKYQINQNGEVRLEKQWSKQVLPFVYQTIVKDIRAFD
SRFSSIKTLDDLFPPRSMVFMLGTPYYGCTGEVQDSGDVITEGRIRVVFSIPCEPNLDAL
IQNQHKYSIKYNPGYVLASRLGVSGYLVSRFTGSIFIGRGSRRNPHGDHKANVGLNLKFN
KKNEEVPGYTKKVGNEWMYSSAAEQLLAEYLERAPELFSYIAKNSQEDVFYEDDIWPGEN
ENGAEKVQEIITWLKGHPVSTLSRSSCDLQILDAAIVEKIEEEIEKCKQRKNNKKVRVTV
KPHLLYRPLEQQHGVIPDRDAEFRLFDRVVNVRENFSVPVGLRGTIIGIKGANREADVLF
EVLFDEEFPGGLTIRCSPGRGYRLPTSALVNLSHGSRSETGNQKLTAIVKPQPAVNHYSS
NSSVSSGHLGGLNHSPQSLFVPTQVPARDDDEFCNIWQSLQGSGKVQHFQPLLQEKGAVL
PQEISQVTQHHKTGFIDNSVKPRKHEPHRKFKEECKSPKTESRSQKMSNRQAFGVPAKYN
IKLLKRNENSEVSENQKVLTGYPGGVGKPNPGIENFLASLNISKESEIQSSHHEEPPSEE
HLSPQSFAMKGTRMLKEILKIDSSDSMDHKNEMKQFGNEVTVSSSRRDEYGSSSQPKQNK
KLTSYMNKPHSASEYHNVQSMDSVCWPTGQIPPMSTPVTELSRICSLVGMPQPDFSFLRT
PQTMTVCQVKLSNGLLVHGPQCHSENEAKEKAALFAIQQLGSLGVNFPLPPPIFPSYPPA
VPPGTIPPVFPQPTGWDHYGSNLALGAANIMPSSSHLFGSVPWGPPMPVPGKPFHHTSYA
GTMPMAGGMSAGVHNQFIPLQVTKKRVANKKNFENKEAQSYQVTPLHTSQSASSDVTKGI
PQETSSASLPSSQIPQPASSFQVAAASPGHSMPHQKLAPSSSRRKSRKLAVNFGVSKPSE
NT seq
5223 nt
NT seq
+upstream
nt +downstream
nt
atgggagtccccaagttttaccgatggatctcggagcgatatccctgcctcagcgaagtg
gtgaaggagcatcagattcctgaatttgataacttatacctggatatgaatggaattata
catcagtgttcccatcctaatgatgatgatgttcacttcagaatttcagatgataaaatc
ttcactgatatttttcactacttggaggtgttgttccgcattattaagcccaggaaagta
ttcttcatggctgttgatggtgtggctcctcgagcaaagatgaaccaacagcgtgggagg
cgttttaggtcagcaaaggaggctgaagaaaaaattaaaaaggcaatagaaaaaggagaa
actctccctgcagaggccagatttgattccaactgtattacaccagggactgaattcatg
gccaggttacacgaacatctgaagtattttgtaaatatgaaaatttctacagacaaatcg
tggcaaggagttaccatctacttctcaggccatgagactcctggagaaggagagcataaa
atcatggagtttatcagatccgagaaggcaaagccagatcatgatccaaacaccaggcac
tgtctttatggcttagatgctgacttgattatgcttggattaacaagtcatgaggcacat
ttctctcttttaagagaagaagttcgatttggtggcaaaaagactcaaagggtatgcgca
ccagaagaaaccacatttcacctcctacacttgtctttaatgagagagtatattgactat
gagttttcagcattaaaagacaagatcacatttaaatatgatattgaaaggataatagat
gattggattttgatgggatttcttgttggcaatgattttatccctcatctacctcattta
catattaatcatgatgcactgcctcttctttatggaacatatattaccatcctgccagaa
cttgggggttacattaatgaaagtgggcatctcaacttacctcgatttgagaaatacctt
gtgaagctatcggattttgatcgagaacacttcagtgaagtttttgtggacctaaagtgg
tttgaaagcaaagttggtaacaagtacctcaatgaagcagcaggtgttgccgcggaagaa
gccaagagctacaaggaaaagaaaaaatcaaagggccaggaaaattccatatgttgggct
gctttagacaaaaatggagaagaagtggtaacttctaaggacaatgtagaagaagagatg
gaagatgatgacctatttgaaaccgagtttaggcaatataaaagaacatattacatgaca
aagatgggagttgatgtagtttctgatgactttctggctgatcaagctgcatgttatgtt
caggcaatacagtggattttgcactattactatcatggagttcagtcctggagctggttt
tatccataccattatgcacctttcctgtctgatatccgcaacatcagtacactcaaaatc
cattttgaactgggaaaaccttttaagccatttgaacagcttcttgctgtacttccagca
gctagcaaaaatttacttcctgcatgctaccagcatttgatgaccagtgacgattcgcca
attatagaatattatccacctgattttaagactgacctaaatgggaaacaacaggaatgg
gaagctgtggtactaataccttttattgatgagaagcggttgttagaagccatggagaca
tgtaaccactccctcaaaaaagaagagagaaaaagaaatcaacatagtgagtgtttaatg
tgctggtttgacagcgacacagagttcacctacccctctccatggccagaaaagttccct
cccgtagagcgatgctgtgcaaggtataaaataatatcattagatgcttggcgtatagat
ataagcaagaacaacataaccaaggttgaccagaaggcattatatttctgtggatttcct
actttgaaacacatcaaacacaaattttttttaaagaaaagtggggttcaagtattccag
caaagcagtcgtggagaaaacatgatgttggaaatcttagtaaatgctgagtcagatgaa
cttagtgtagaaaatatagcttcatcagtgcttgggaagtctgtctttgttaattggcct
catcttgaagaagctagagttgttggtgtatcagatggagaaactaagttttacttggaa
gaacctccaggaacacagaagctttatttgggaagaactgcaccaccatctaaagtggtc
catcttggagacaaagaacaatgtaattggacaaaagaagtacaaggaatttcagaatac
tacctgagaagaaaaggaataataataaacgaaacatctgcagttgtatatggtcagtta
ctcacaggtcgtaaatatcaaataaatcaaaatggagaagtccgtctagagaaacagtgg
tcaaaacaagttcttccatttgtttatcaaaccattgtcaaagacatccgagcttttgac
tcccgtttctccagtataaaaacattggatgacttgtttcctcctagaagtatggtcttt
atgctgggaacaccctactatggatgcactggagaggttcaggattcaggggatgtgatt
acagaaggcagaattcgtgtggttttcagcattccatgtgaacccaatcttgatgcttta
atacaaaaccagcataaatattctataaagtacaacccaggatatgtgttggccagtcgc
cttggagtgagtggataccttgtttcaaggtttacaggaagtatttttattggaagagga
tctaggagaaaccctcatggagaccataaagcaaatgtgggtttgaatctcaaattcaac
aaaaaaaatgaggaggtacctggatatactaagaaagttggaaacgaatggatgtattca
tctgcagcagaacagcttcttgcagagtacttggagagagctccagagctattcagttac
atagccaaaaatagccaagaggatgtgttctatgaagatgacatttggcctggagaaaat
gagaacggtgctgagaaagttcaagaaattattacttggctaaagggacatcctgtcagt
actttgtctcggtcttcttgtgatttacaaattctggatgcagctattgttgagaaaatt
gaagaagaaattgaaaagtgcaagcaaagaaagaataataagaaagttcgagtgacagtg
aagccccatttgctatacagacctttggaacagcaacatggggttattcctgatcgggat
gcagaatttcgtctctttgaccgtgttgtaaatgtgagagagaacttttctgttccagtt
ggccttcggggcaccatcataggaattaaaggggctaatagagaagctgatgtactattt
gaagtattatttgatgaagaatttcctggaggcttaacaataaggtgctcacctggtaga
ggttatcgactgccaacaagtgccttggtgaacctttctcatgggagtcgctctgagact
ggaaatcagaagttgacagccattgtgaaaccacagccagctgtgaatcactatagctca
aattcatcagtttcatctgggcatttgggaggcctgaaccattcccctcaatcacttttt
gttcctactcaagtacctgctagagatgatgatgaattttgtaacatttggcagtcctta
cagggatctggaaaggttcaacactttcagccactgctacaagagaagggtgcagttcta
cctcaagaaataagtcaagtaactcaacatcataaaacgggctttattgacaacagcgtt
aagccgagaaaacatgagcctcacagaaaatttaaagaagagtgtaagagtcctaaaact
gagagtcggtcacaaaaaatgtcaaataggcaggcatttggagtgcctgccaaatataat
attaagctactgaagagaaatgaaaattcagaagtctcagaaaatcaaaaggttctgact
ggttatccaggtggtgttggtaagcctaatcctggaatcgagaacttcttagcatccttg
aatatctccaaagaaagtgaaatacagtcatctcatcatgaagagcctccaagtgaagaa
catttgtcaccacagtcatttgctatgaaaggaactcggatgcttaaagaaattctaaaa
attgacagctctgacagtatggatcataagaatgaaatgaaacagtttggtaatgaagtc
actgtttcctctagtagaagagatgaatatggatcttcctcacaacctaaacaaaataag
aaattgacatcttatatgaacaagcctcacagtgctagtgagtaccataatgttcagtct
atggacagtgtgtgctggcctactggccagattcctcctatgtccacaccagtaactgaa
ctttctcgaatttgttcccttgttggaatgccacaaccagatttctcctttctgagaaca
ccacagacaatgacagtttgccaggtaaaattatctaacggcttactggtacatgggcca
cagtgccattctgaaaatgaagccaaggaaaaagctgcactttttgctatacaacaattg
ggctccttaggagtgaatttccctttgcctccaccaatatttccaagttatcctccagct
gtaccacctggaaccattcctccagtttttccccagcctactggctgggatcactatgga
agcaacttagcattgggggcagctaatatcatgccttcatcatctcatctctttggctca
gtgccatggggaccaccaatgccagttcctgggaagcccttccatcatacatcgtatgct
gggaccatgccaatggctgggggaatgtcagctggtgtacacaatcagttcatacctcta
caggtaactaaaaaaagagttgcaaacaaaaagaactttgagaataaggaggcccagagt
tatcaagtcaccccgcttcacactagccagtcagcatcttctgatgtcaccaaaggaatt
ccacaggagacttcatcagcttccttaccatcctctcagatccctcaacctgcatcttct
tttcaagttgcagctgcttccccaggccatagtatgcctcaccagaagttggcaccaagc
tcttcaagaagaaaatcaagaaaactggctgtcaattttggcgtttctaaaccttctgaa
taa
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