Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043: BBCT_1355
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Entry
BBCT_1355 CDS
T03931
Name
(GenBank) DNA-directed RNA polymerase beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
bcat
Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043
Pathway
bcat03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bcat00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BBCT_1355
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bcat03021
]
BBCT_1355
03400 DNA repair and recombination proteins [BR:
bcat03400
]
BBCT_1355
Enzymes [BR:
bcat01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BBCT_1355
Transcription machinery [BR:
bcat03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BBCT_1355
DNA repair and recombination proteins [BR:
bcat03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BBCT_1355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
BAR02323
UniProt:
A0ABM7EWM5
LinkDB
All DBs
Position
complement(1638214..1641774)
Genome browser
AA seq
1186 aa
AA seq
DB search
MAEATTNTTTIIARADQHDIDLHKASDRVNFGSIREPIDVPYLLGVQTDSFDWLIGNERW
QKRVEKDLENGTNTVSHTSGLDEVFQEISPIENFAQTMSLTFSDPYFEEPRHTVQECKEK
DYTYSAPLYVNAEFENGDTGEIKSQTVFMGDFPLQTPHGTFIIGGTERVIVSQLVRSPGV
YFDRSQDRTSDKEVFGAKIIPSRGAWLEFEIDKRDVLGVRVDRKRKQSAIVFLMAIGMTK
DEIADAFKDYPLVMDALAKETVQTQDEALTDLYRKIRPADTPTPEAGRNLLDSFYFNTKR
YDLARVGRYKINRKLGLEKDINDRSLSREDIISTIKYLVTLHAGDTKFPGKRDGQDVDLR
VDVDDIDHFGNRRIRQVGELIQNQLRTGLSRMERVVRERMTTQDPEAITPQSLINIRPVN
ATIKEFFGTSQLSQFMDQNNPLAGVTNKRRLSALGPGGLSRDRASMEVRDVHPSHFGRMC
PIESPEGPNIGLIGSLATFGRINPFGFIETPYRKVVNGHVTDEVEYMTADRDAEHVIAQA
NQELDDNGNFVKKQALARVGEEEAVDVPVSSVDYMDVSPRQMVSVGASLIPFLEHDEGHR
ALMGTNMQRQAVPLIESERPLVGTGAEWRAAVDSGDVILAEKPGVVTYVSADIIRVMNDD
GTTSSYKLAKFRRSNQTTCYNQVPLIHDGERVEAGTVLADGPATQKGEMALGKNLLIAFM
PWNGYNYEDAVIISQRLVQDDTLSSIHIEEYEIDARETKLGAEEITRDLPNVGEDAVANL
DERGIIRIGAEVEAGDILVGKVTPKGETELTPEERLLRAIFGEKSREVRDTSLRVPHGET
GTVIDVKEITREDAEEDGDELPNGVNQMIRVYIAQHRKITQGDKLSGRHGNKGVISRILP
EEDMPFLADGTPVDIMLNPLGVPSRMNLGQVLELHLGWIAHAGWDISLDPDIEAAWKKNI
PQGAEKGEPGTPVATPVFDGVRPETIKGLLSCTLPDRDGNKLVGDDGKAVLFDGRTGEPY
PKPISVGYMYMLKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAY
GAAYTLHEMMTTKSDDVDGRVRVYGAIVKGDNLPPAGIPESFKVLLKEMQSLSLNVEVLN
AEGVAIDMKDEDDDPSASSDDLGFNIGARPDAVAKADQVVEEPEFQ
NT seq
3561 nt
NT seq
+upstream
nt +downstream
nt
ttggctgaggctacgacgaacaccaccaccatcatcgcacgcgccgaccagcacgatatt
gatctgcacaaggcgtcggaccgtgtgaacttcggctccatccgcgagcccattgatgta
ccctacctgttgggtgtacagactgacagctttgactggctcatcggcaatgagcgctgg
cagaagcgtgtcgagaaggatctggagaacggcaccaacaccgtgtcccacacttctggt
cttgacgaggtcttccaggagatctctccgatcgagaacttcgctcagaccatgagcctg
accttctccgatccgtatttcgaggaaccgcgccacaccgtgcaggagtgcaaggagaag
gattacacctactctgctccgctgtacgtgaacgctgagttcgagaacggcgacaccggt
gaaatcaaatcccagactgtgttcatgggcgatttcccgctgcagaccccgcacggcacc
ttcatcatcggcggtaccgagcgagtgatcgtgtcgcagctggtgcgttctccgggcgtg
tacttcgaccgtagccaggatcgtacttccgacaaggaagtttttggcgctaagattatt
ccgagccgtggcgcatggctcgagtttgagatcgacaagcgtgatgtgctcggcgtgcgc
gtggatcgtaagcgcaagcagtccgccatcgtgttcctcatggctatcggcatgaccaaa
gatgagatcgccgacgccttcaaggattacccgctggtcatggacgcgctcgccaaggag
accgtgcagacccaggacgaggctctgaccgatctgtaccgcaagatccgcccggccgac
actccgacgccggaagctggccgcaatctgctggattccttctacttcaacaccaagcgt
tacgatctggcccgcgtcggccgttacaagatcaaccgcaagcttggcttggagaaggat
atcaacgatcgcagcctgtctcgcgaagacatcatctccaccatcaagtatctggtcacg
ctgcatgccggtgacacaaagttcccgggcaagcgcgatggtcaggatgtggatctgcgc
gtggacgtcgacgatatcgaccacttcggcaaccgtcgtatccgtcaggtcggcgagctg
atccagaaccagttgcgcactggtctgagccgtatggagcgcgtggtccgcgagcgtatg
accactcaggatccggaggccatcaccccgcagtccctgatcaacatccgcccggtgaac
gctaccatcaaggagttcttcggaacctcccagctgtcgcagttcatggatcagaacaac
ccgctggcaggtgtgaccaacaagcgtcgtctgtccgctctgggccctggtggtctgtcc
cgcgaccgtgcatccatggaagtgcgagacgtgcacccgtcccatttcggccgtatgtgc
ccgatcgagtctcctgaaggcccgaacatcggtcttatcggctctctggcaaccttcggt
cgcatcaatccgttcggcttcatcgagaccccgtaccgtaaggtcgtcaacggccatgtg
accgacgaggtcgaatacatgaccgcagaccgcgatgccgagcacgtcatcgcacaggcc
aatcaggagctcgacgataacggcaacttcgtcaagaagcaggccctggcccgagtcggc
gaggaagaagcggtcgatgtgccggtcagctccgttgactacatggacgtttccccgcgc
cagatggtttccgtcggtgcatccctgatcccgttcctggagcacgatgagggccaccga
gcgctgatgggtaccaacatgcagcgtcaggccgtgccgctgatcgaatccgagcgcccg
ctggtgggcaccggtgccgaatggcgtgcagccgttgattccggcgatgtcattctggct
gagaagccgggcgtggtgacctacgtttccgccgacattatccgtgtgatgaacgacgat
ggcaccaccagctcctacaagctggccaagttccgccgttccaaccagaccacctgctac
aaccaggtgccgctgatccacgacggcgaacgtgtggaagccggtaccgtgctggccgac
ggcccggcaacccagaagggtgaaatggctttgggtaagaacctgctcatcgccttcatg
ccgtggaacggctacaactacgaggatgctgtgatcatctcccagcgtctcgtgcaggac
gacaccctaagctccattcacatcgaggaatacgagatcgacgcccgcgaaaccaagctg
ggtgccgaggagatcacccgtgatctgccgaacgtcggcgaagacgcggtggccaacctc
gatgagcgtggcattatccgcatcggcgccgaagtcgaagccggcgacattctggtgggt
aaggtcaccccgaagggcgaaaccgagctgactccggaagagcgcttgctgcgcgccatc
ttcggtgagaagagccgcgaagtgcgtgacacctcgctgcgtgtgcctcacggcgagacc
ggtacggtgattgacgtcaaggagatcacccgcgaagacgccgaagaagacggcgacgag
ctgccgaacggcgtgaaccagatgatccgcgtctacattgcgcagcatcgtaagatcacc
cagggcgacaagctctccggccgacatggcaacaagggcgttatctcccgcattctgccg
gaagaggatatgccgttcctcgcagatggtactccggtcgacatcatgctgaacccgctg
ggtgtgccttctcgaatgaaccttggacaggtgctggaactgcatttgggctggatcgcg
catgccggctgggacatctccctcgacccggatattgaagccgcttggaagaagaacatt
ccgcagggcgccgaaaagggcgagccgggcactccggtggcaaccccggtgttcgacggc
gttcgtccggaaaccatcaagggcctgctttcctgcaccttgccggatcgcgacggcaac
aagctggtcggagacgacggcaaggccgtgctgttcgacggtcgtaccggcgaaccgtac
ccgaagccgatctccgttggctacatgtacatgctgaagctgcaccacctggtcgacgac
aagattcacgcacgttccaccggcccgtactccatgatcacccagcagccgttgggcggc
aaggcccagttcggtggccagcgtttcggcgagatggaagtgtgggccctcgaggcctac
ggcgccgcctacacgctgcacgagatgatgaccaccaagtccgatgacgtcgacggccgc
gtgcgtgtctacggtgccattgtgaagggtgacaacctgccgccggcaggcattccggaa
tccttcaaggtgctgcttaaggaaatgcagtccctgtccctgaacgtcgaagtgctcaac
gcggaaggcgtggccatcgacatgaaggacgaggatgacgatccgtctgcttcctccgac
gatcttggcttcaacattggcgcgcgtcccgacgcggtcgccaaggctgaccaggttgtg
gaagaacctgaattccagtga
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