Buchnera aphidicola BCc: BCc_226
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Entry
BCc_226 CDS
T00423
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
3.6.4.13
]
Organism
bcc
Buchnera aphidicola BCc
Pathway
bcc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bcc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BCc_226 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bcc03019
]
BCc_226 (deaD)
03009 Ribosome biogenesis [BR:
bcc03009
]
BCc_226 (deaD)
Enzymes [BR:
bcc01000
]
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.4 Acting on acid anhydrides to facilitate cellular and subcellular movement
3.6.4.13 RNA helicase
BCc_226 (deaD)
Messenger RNA biogenesis [BR:
bcc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BCc_226 (deaD)
Ribosome biogenesis [BR:
bcc03009
]
Prokaryotic type
rRNA helicases
BCc_226 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Motif
Other DBs
NCBI-ProteinID:
ABJ90695
UniProt:
Q057K4
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All DBs
Position
complement(260602..262332)
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AA seq
576 aa
AA seq
DB search
MTQIHLSFSVFGLNSFLLKSLKILGYEKPSPIQSACIPYLLSGKDVLGMAQTGSGKTAAF
ALPLLNNINISLKFPQILVLVPTRELAVQVAKSFSDFSKYLIGTQVLALYGGQRYEIQLH
ALRRGPQIIVGTPGRLLDHLKRGTLSLIHLSSLVLDEADEMLRMGFIEDVETIMSKIPRK
HQTALFSATMPNIIRRISRRFMNTPKEIKIQSTGITRPDIQQSYWIVRGRKTDALIRFLE
VEDFSATIIFVRTKNATLEVSEALEKNGYNSAALNGDMNQVLREQTLERLKNGKLDILIA
TDVAARGLDVDRISFVINYDIPTDAESYVHRIGRTGRAGRTGRALLFVEYREYRLLKNIE
RIIKHPIHEIQLPKSEILIEKRLQNISNKIQEQLNNKNLKLYKSLLSKLKLKDGWNFENL
SAALLKLVQNERPLIIPPDKKSSPLSFKRNSFISFNNQKKYTNNRRFLNNKSNKNYKKME
DMILYRIDIGRNDRVEVRHIVGAIANEGDISSRLIGNIRLFSNYSTIELPKSYSKHLFTR
LLHTRILNKPINIKLMSSVVQIKENKRRKFIKSKRI
NT seq
1731 nt
NT seq
+upstream
nt +downstream
nt
atgacacaaattcatctctcattttctgtttttggattaaattcttttttattaaaatct
cttaaaatattaggttatgaaaaaccttctcctattcaatctgcttgtattccttattta
ttatcaggaaaagatgttttaggaatggctcaaacaggtagtggaaaaactgcagctttt
gctttacctttattaaataatattaatatttctttaaaatttccacaaattttagtatta
gttcctacacgtgaattagctgtacaagtagctaaatcattttctgatttttctaaatat
ttaataggaacacaagtattagctttatatggtggtcaaagatatgaaatacagttacat
gcattacgaagaggtcctcaaattattgtaggaacaccaggtagattattagatcattta
aaaagaggaactttaagtttaattcatctttctagtcttgttttagatgaagctgatgaa
atgttacgtatgggttttatagaagatgttgaaactataatgtcaaaaatacctcgaaaa
catcagacagcattattttcagctactatgcctaatattattcgtagaatatctagaaga
tttatgaatactccaaaagaaataaaaatacaatctactggtattactcgtcccgacatt
caacaaagttattggattgtaagaggaagaaaaactgatgctttaattcgatttttagaa
gtagaagatttttctgctactataatttttgttcgtacaaaaaatgctactttagaagta
tcagaagcattagaaaaaaacggatacaatagtgctgctttaaatggtgatatgaatcaa
gtattacgagaacaaactttagaacgtttaaaaaatggtaaattagatattttaatagct
actgatgttgcagctagaggtttagatgttgatagaattagttttgttattaattatgat
attcctactgatgcagaatcatatgtgcatagaatcggtagaactggtagagctggtaga
actggtcgtgcattgttatttgttgaatatagagaatatagattattaaaaaatattgaa
agaatcattaaacatcctattcatgaaattcaattacctaaatctgaaattctaatagaa
aaaagattacaaaatatttcaaataaaattcaggaacaattaaataataaaaatttaaaa
ttatataaatcattattatcaaaattaaaattaaaagatggttggaattttgaaaattta
tctgcagcattattaaaattagttcaaaatgaaagaccccttattattccacctgataaa
aaatcttctcctctttcttttaaaagaaattcttttatttcgtttaataatcaaaaaaaa
tatacaaataatagaagatttttaaacaataaatctaataaaaattataaaaagatggaa
gatatgattttatatcgtattgatataggtcgtaatgatagagtagaagttcgtcatatt
gtaggagctatagcaaatgaaggtgatattagcagtagattaattggaaatattagactt
ttttctaattattccactattgaattaccaaaaagttattcaaaacatttatttacacgt
ttattacatacacgtattttaaataaaccaataaatataaaattaatgtcatctgttgtt
caaataaaagaaaataaaagaagaaaatttataaaaagtaaaagaatataa
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