Burkholderia cepacia DDS 7H-2: DM42_1481
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Entry
DM42_1481 CDS
T03302
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
bced
Burkholderia cepacia DDS 7H-2
Pathway
bced03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bced00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DM42_1481 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bced03021
]
DM42_1481 (rpoB)
03400 DNA repair and recombination proteins [BR:
bced03400
]
DM42_1481 (rpoB)
Enzymes [BR:
bced01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DM42_1481 (rpoB)
Transcription machinery [BR:
bced03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DM42_1481 (rpoB)
DNA repair and recombination proteins [BR:
bced03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DM42_1481 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
UbiD
BSH_YknX
BSH_CzcB
Motif
Other DBs
NCBI-ProteinID:
AIO47619
LinkDB
All DBs
Position
1:complement(1614430..1618536)
Genome browser
AA seq
1368 aa
AA seq
DB search
MQYSFTEKKRIRKSFAKRPIVHQVPFLLATQLESFSTFLQADVPATQRKPEGLQAAFTSV
FPIVSHNGFARLEFVSYALSSPAFNIKECQQRGLTYCSALRAKVRLVILDKESPNKPVVK
EVKEQEVYMGEIPLMTPTGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSAR
IIPYRGSWLDFEFDPKDILYFRVDRRRKMPVTILLKAIGLTPEQILANFFVFDNFTLMDE
GAQLEFVPERLRGEVARFDITDRDGKVIVQKDKRINAKHIRDLEAAKTKFISVPEDYLLG
RVLAKNVVDGDTGEVIASANDEVTESVLEKLREAGIKDIQTLYTNDLDQGPYISSTLRVD
ETTDKTAARIAIYRMMRPGEPPTEEAVEALFNRLFYSEEAYDLSKVGRMKFNRRVGRDEI
VGPMTLQDDDILATIKILVELRNGKGEVDDIDHLGNRRVRCVGELAENQFRAGLVRVERA
VKERLGQAESENLMPHDLINSKPISSAIREFFGSSQLSQFMDQTNPLSEITHKRRVSALG
PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYAHLNEYGFLETPYRKV
VDSKVTDQIDYLSAIEEGRYMIAQANAAIDEDGRLIDELVSSREAGETMMVTPDRIQYMD
VAPSQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPCLRPEKPVVGTGIERTCAVDSGT
TVQAFRGGVVDYVDAGRIVIRVNDDEAVAGEVGVDIYNLIKYTRSNQNTNINQRPIVKMG
DKVSRGDVLADGASTDLGELALGQNMLIAFMPWNGYNFEDSILISEKVVADDRYTSIHIE
ELNVVARDTKLGPEEITRDISNLAEVQLGRLDESGIVYIGAEVEAGDVLVGKVTPKGETQ
LTPEEKLLRAIFGEKASDVKDTSLRVPSGMSGTVIDVQVFTREGIQRDKRAQQIIDDELK
RYRLDLNDQLRIVEGDAFQRLARMLVGKVANGGPKKLAKGTKIDQAYLEDLDHYHWFDIR
LADDEAAASLEAIKNSIEEKRHQFDLAFEEKRKKLTQGDELPPGVLKMVKVYLAVKRRLQ
PGDKMAGRHGNKGVVSKIVPIEDMPYMADGRPADVVLNPLGVPSRMNVGQVLEVHLGWAA
KGLGWRIGEMLQRQAKIEELRTFLTKIYNESGRQEDLESFTDDEILELAKNLREGVPFAT
PVFDGATEEEMGKMLDLAFPDDIAEQLGMNPSKNQVRLYDGRTGEMFERRVTLGYMHYLK
LHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQEMLTVK
SDDVTGRTKVYENLVKGDHVIDAGMPESFNVLVKEIRSLGIDIDLDRN
NT seq
4107 nt
NT seq
+upstream
nt +downstream
nt
atgcaatattccttcaccgagaagaagcgcattcgcaagagtttcgcgaagcgccccatc
gttcaccaagttccgttcttgctggctactcagcttgaatcattcagcacgtttctgcaa
gccgatgtgcccgcgacgcaacgtaagcccgagggtttgcaggccgcgttcacgtcggta
tttcccattgtttcgcacaacggtttcgcgcgcctcgagttcgtgagctatgcgctgtcc
tcgccggcattcaacatcaaggaatgccagcagcgaggcctgacgtactgctccgcgctg
cgcgcgaaggtccgcctcgtcatcctcgacaaggaatcgccgaacaagccggtcgtcaag
gaagtgaaggagcaggaagtgtacatgggcgaaattccgctcatgacgccgacgggctcg
ttcgtcatcaacggcaccgagcgtgtcatcgtctcgcagctgcatcgttcgcctggcgtg
ttcttcgaacacgacaagggcaagacgcacagctcgggcaagctgctgttctcggcacgg
atcattccgtaccgcggttcgtggctcgacttcgaattcgatccgaaggacatcctgtac
ttccgcgtcgaccgtcgccgcaagatgccggtcacgatcctgctgaaggccattggcctg
acgccggaacagatcctcgcgaacttcttcgtgttcgacaatttcacgctgatggacgaa
ggcgcgcaactcgagttcgtgcccgagcgcctgcgtggtgaagtcgcgcgtttcgacatc
acggatcgtgatggcaaggtcatcgtccagaaggacaagcggatcaacgcgaagcacatt
cgcgacctcgaagccgcgaagaccaagttcatctcggtgccggaagactatctgctcggc
cgcgtgctggcgaagaacgtcgtcgacggcgacaccggcgaagtgatcgcgagcgcgaac
gacgaagtcacggaaagcgtgctcgagaagctgcgcgaagcgggcatcaaggacatccag
acgctctacacgaacgatctggatcagggcccgtacatctcgtcgacgctgcgtgtcgac
gaaacgaccgacaagacggccgcgcgcatcgcgatctaccgcatgatgcgtccgggcgag
ccgccgaccgaagaagcggtcgaggccctgttcaaccgtctgttctacagcgaagaagcg
tacgacctgtcgaaggtcggccgcatgaagttcaaccgccgcgtcggccgtgacgagatc
gtcggcccgatgacgctgcaggacgacgacatcctcgcgacgatcaagatcctcgtcgag
ctgcgcaacggcaagggcgaagtggacgacatcgaccacctcggcaaccgtcgcgtgcgt
tgcgtcggcgaactggcggaaaaccagttccgcgccggtctcgtgcgtgtcgagcgcgcg
gtcaaggaacgcctcggccaggccgaaagcgaaaacctgatgccgcacgacctgatcaac
tcgaagccgatttcgtcggcgattcgcgagttcttcggctcgtcgcagctgtcgcagttc
atggaccagaccaacccgctgtcggaaatcacgcacaagcgccgtgtttccgcactgggc
ccgggcggtctgacgcgcgaacgcgcaggcttcgaagtccgcgacgtgcacccgacccac
tacggccgcgtgtgcccgatcgaaacgccggaaggtccgaacatcggcctgatcaactcg
ctcgcgctgtacgcgcacctgaacgagtacggcttcctcgagacgccgtaccgcaaggtc
gtggacagcaaggtgaccgatcagatcgactacctgtcggcgatcgaggaaggccgctac
atgatcgctcaggcgaacgccgcgatcgacgaagacggccgactcatcgacgaactcgtg
tcgtcgcgcgaagccggcgaaacgatgatggtcacgccggaccgtatccagtacatggac
gtcgcgccgtcgcagatcgtgtcggtggccgcatcgctgattccgttcctcgagcacgat
gacgcgaaccgcgcgctgatgggctcgaacatgcagcgtcaggccgtgccgtgtctgcgt
ccggaaaagccggtcgtcggtacgggcatcgagcgcacctgcgcggtcgactcgggtacg
acggtccaggcgttccgcggcggtgtggtcgactacgtcgacgcaggccgtatcgtgatt
cgcgtgaacgacgacgaagcagtcgcgggtgaagtcggtgtcgacatctacaacctgatc
aagtacacgcgttcgaaccagaacacgaacatcaaccagcgtccgatcgtgaagatgggc
gacaaggtctcgcgcggcgacgtgctggccgacggcgcctcgacggacctgggcgagctc
gcgctcggccagaacatgctgatcgcgttcatgccgtggaacggctacaacttcgaggat
tcgatcctgatctcggagaaggtggtcgcggacgatcgctacacgtcgatccacatcgaa
gagctgaacgtcgttgcacgcgacacgaagctcgggccggaagaaatcacgcgcgacatc
tcgaacctggcggaagtccagctcggccgtctcgacgaatcgggcatcgtgtacatcggt
gctgaagtcgaagcaggcgacgtgctggtcggcaaggtcacgccgaagggcgagacccag
ctgacgccggaagagaagctgctgcgcgcgatcttcggtgagaaggcttcggacgtgaag
gacacgtcgctgcgcgtgccgtcgggcatgagcggcaccgtgatcgacgtccaggtgttc
acgcgtgaaggcatccagcgcgacaagcgtgcgcaacagatcatcgacgacgaactgaag
cgctaccgtctcgacctgaacgaccagctgcgcatcgtggaaggcgacgcattccagcgt
ctcgcccgcatgctcgtgggcaaggtcgcgaacggcggtccgaagaagctcgcgaagggc
acgaagatcgaccaggcttacctggaagatctcgaccactaccactggttcgacatccgc
ctcgcggacgacgaagcagcggcatcgctcgaagcgatcaagaactcgatcgaagagaag
cgccaccagttcgatctcgcgttcgaagaaaagcgcaagaagctcacgcaaggcgacgaa
ctgccgccgggcgtgctgaagatggtcaaggtgtacctcgcggtgaagcgccgtctgcag
cctggcgacaagatggcaggccgtcacggtaacaagggtgtcgtgtcgaagatcgtcccg
atcgaagacatgccgtacatggccgatggccgtccggcagacgtcgtgctgaacccgctc
ggcgtgccgtcgcggatgaacgtgggccaggttctggaagtgcacctcggctgggccgcg
aagggcctcggctggcgtatcggcgaaatgctgcagcgtcaggcgaagatcgaggaactg
cgcacgttcctgacgaagatctacaacgagtcgggccgccaggaagatctggaaagcttc
accgacgacgagatcctcgaactcgcgaagaacctgcgcgaaggcgtgccgttcgcgacg
ccggtgttcgacggtgcgaccgaggaagaaatgggcaagatgctcgacctcgcgttcccg
gacgacatcgccgaacagctcggcatgaacccgtcgaagaaccaggtccgtctgtacgac
ggccgcacgggtgaaatgttcgaacgtcgcgtgacgctcggctacatgcactacctgaag
ctgcaccacctggtcgacgacaagatgcacgcgcgttcgaccggcccgtactcgctcgtc
acgcagcagccgctgggtggtaaggcgcagttcggtggccagcgtttcggtgaaatggaa
gtgtgggcactcgaagcgtacggcgcgtcctacgtgctgcaggaaatgctgacggtgaag
tcggacgacgtgaccggccggacgaaggtgtacgaaaacctcgtcaagggcgaccacgtg
atcgatgcaggcatgccggaatccttcaacgtgctcgtgaaggaaatccgctcgctcggt
atcgatatcgatctcgaccgcaattaa
DBGET
integrated database retrieval system
