Burkholderia cenocepacia H111: I35_7581
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Entry
I35_7581 CDS
T03804
Name
(GenBank) ATP-dependent DNA ligase clustered with Ku protein, LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bceo
Burkholderia cenocepacia H111
Pathway
bceo03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bceo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
I35_7581
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bceo03400
]
I35_7581
Enzymes [BR:
bceo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
I35_7581
DNA repair and recombination proteins [BR:
bceo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
I35_7581
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
CDN65138
LinkDB
All DBs
Position
3:complement(663982..666768)
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AA seq
928 aa
AA seq
DB search
MAGKLDPYRRKRHFGATPEPEGAHGKRRAKAQTKAGTQPNAKPAARAGHPLRFVIQEHHA
RRLHYDFRLELDGTLKSWAVPKGPSFDPQVKRLAVHVEDHPLEYASFEGEIPAGHYGAGS
VVVWDEGTWTPDGGIAHAREGYRAGKLTFRLDGEKLHGGWALVRSGRQEGRQEQWLLIKE
RDDDARSADEFDVVGERPGSVHDGASHGAARKHAARRRGSNGADGANGDARAARRESPES
PESHEGPRPTEPSQVEGAVRAPLPERVAPQLATLVDAPPTQGGWCYELKFDGYRILARIA
GKGARRRVTLMTREGRDWTAKLRAQRDALAALDVDDAWLDGEAVVLGDNGLPDFQALQNA
FGTDRSDTITFFVFDLPYLDGYDLRDAPLTARRALLEPLLANCDPARVRFSPDLGEDIAS
LIASACDTGLEGLIGKRAESRYRAGRSPAWIKLKCRRRQEFVIGGFTEPSGSRHGFGALL
LGVHEPAPAGKRRRGPGPLRYVGRVGTGFDARMLDRLAAILRKHERDTMPFDAPPRERTR
TRVHWVEPTLVAECEFAEWTGDGIVRQAAFIALRDDKPAEQIVREMPTHTETEGAMDQRS
TTQDKPRRASRTDRHASTGQARGARADADTGDDTIGRVRITHPERVLDPQSGTRKLDLAR
YWQWVAPWLLPDLKGRPVSLVRAPGDIAGELFFQKHAERREIPFVTQHEGLDPGHGPLLS
IDSVDALLGAAQMGTVELHTWNAHASNIERPDRIVFDLDPDPALPWRTMIDAAQLVRGLL
DELGLVSFCKTSGGKGLHVVVPLTRHAGWDDVKDFSRAVAQHVAGTLPDRFTATMGPRHR
RGKIFVDYLRNGRGASTIAAYSVRARPGMGVSVPLDWDEVPETTGGAQWTIDTLHERLDT
LKRDPWEGYAKTRQRITAAMRARLGADA
NT seq
2787 nt
NT seq
+upstream
nt +downstream
nt
atggccggcaagctcgatccgtatcgccgcaagcgccatttcggcgcgacgcccgagccc
gaaggcgcgcacggcaagcgtcgcgcgaaggcgcagacgaaagcggggacgcagccaaac
gcgaagcctgccgcacgcgcaggccatccgctgcgcttcgtgatccaggagcaccacgcg
cgccggctgcactacgatttccggctcgaactcgacggcacgctgaagtcgtgggccgtg
ccgaaggggccgagcttcgatccgcaggtgaagcggctcgccgtgcacgtcgaggatcat
ccgctcgaatacgcgtcgttcgaaggcgagattccggccgggcattacggggcggggtcg
gtcgtcgtatgggacgaaggtacgtggacgcccgatggcggcatcgcgcatgcgcgcgaa
ggctatcgggccggcaagctgacgttcaggctcgacggcgaaaagctgcacggcggctgg
gcgctcgtgcgcagcgggcggcaggaggggcgtcaggagcagtggctgctgatcaaggag
cgcgacgacgacgcgcgcagcgccgatgaattcgacgtcgtcggcgagcggccggggagc
gtgcatgacggtgcgtcccacggcgcggcgcgcaagcatgctgcgcggcgtcgcggatcg
aatggcgcggatggcgcgaatggcgatgcacgtgccgcacgacgcgaaagccccgaaagc
cccgaaagtcacgaaggcccgcgccccaccgaaccgtcgcaagtcgaaggcgcggtgcgc
gcgccgctgcccgagcgcgtcgcgccgcaactcgcgacgctggtcgatgcgccgccgact
cagggcggctggtgctacgaactgaagttcgacggctatcgaatcctcgcgcgcattgcc
gggaagggcgcgcgtcgacgcgtcacgctgatgacgcgcgaaggccgggactggaccgcg
aagctgcgcgcgcagcgcgacgcgctcgcggcgctcgacgtcgacgacgcgtggctcgac
ggcgaggccgtcgtgctcggcgacaacggcctgccggatttccaggcgctgcagaacgcg
ttcggcacggaccgttcggacacgatcactttcttcgtgttcgatctgccttatctcgac
ggctacgacctgcgcgacgcgccgctcaccgcccgtcgcgcattgctcgagccgctgctc
gcgaactgcgacccggcgcgcgtgcgcttttcgcccgatctcggcgaggacatcgcatcg
ctgatcgcgagcgcctgcgacaccggcctcgaagggctgatcggcaagcgtgcggaatcg
cgctaccgcgccggccgttcgcccgcgtggatcaagctcaagtgccggcgccggcaggag
ttcgtgatcggcggctttacggagccgtcgggcagccggcacggcttcggcgcgctgctg
ctcggcgtgcacgaaccggcgccggccggcaaacggcgacgcgggccggggccgctgcgc
tacgtcggccgcgtcggcaccggcttcgacgcgcggatgctcgaccgtctcgccgcgatc
ctgcgcaagcacgagcgcgacacgatgccgttcgatgcgccgccgcgcgaacgcacgcgc
acgcgcgtgcactgggtcgagccgacgctcgtcgccgaatgcgaattcgcggaatggacc
ggtgacggcatcgtgcggcaggccgcgttcatcgcgttgcgcgacgacaagccggcggag
cagatcgtccgcgagatgccgacacacacggaaacggagggggcgatggatcagcgttcg
actacgcaggacaagccgcggcgtgcgtcgcgcaccgatcgtcacgcgagcacgggccag
gcgcgcggcgcgcgcgccgatgccgataccggcgacgatacgatcggccgcgtgcgcatc
acgcatcccgagcgcgtgctcgatccgcaaagcggcacgcgcaagctcgatctcgcgcgg
tactggcaatgggtcgcaccgtggctgttgcccgacctgaaaggccggcccgtgtcgctc
gtgcgcgcacccggcgacatcgccggcgaactgttcttccagaagcacgcggaacgccgc
gagattccgttcgtcacgcagcacgaaggactcgacccgggccacgggccgctgctgtcg
atcgacagcgtcgacgcgctgctcggcgccgcgcagatgggcacggtcgagctgcatacg
tggaacgcgcacgcgtcgaacatcgagcggcccgaccgcatcgtgttcgacctcgatccc
gacccggcgctgccgtggcgcacgatgatcgacgccgcgcagctcgtgcgcgggctgctc
gatgaactcgggctcgtatcgttctgcaagacgagcggcggcaaggggctgcacgtcgtc
gtgccgctcacgcggcatgcgggctgggacgacgtgaaggacttttcgcgcgcggtcgcg
cagcacgtcgccggcacgctgcccgaccgtttcaccgcgacgatggggccgcgccaccgg
cgcggcaagatcttcgtcgactatctgcgcaacggccgcggcgcgagcacgatcgccgcg
tattcggtgcgcgcgcggcccggcatgggcgtgtcggtgccgctcgactgggacgaggtg
cccgagacgaccggcggcgcgcaatggacgatcgacacgctgcacgaacggctggatacg
ctgaagcgcgacccgtgggaaggttatgcgaagacgcgccagcgcatcaccgcggcgatg
cgcgcgcggctcggcgccgatgcgtga
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