KEGG   Burkholderia cenocepacia J2315: BCAL1879
Entry
BCAL1879          CDS       T00771                                 
Symbol
hfq
Name
(GenBank) Hfq protein
  KO
K03666  host factor-I protein
Organism
bcj  Burkholderia cenocepacia J2315
Pathway
bcj02024  Quorum sensing
bcj03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bcj00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BCAL1879 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    BCAL1879 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bcj03019]
    BCAL1879 (hfq)
   03036 Chromosome and associated proteins [BR:bcj03036]
    BCAL1879 (hfq)
Messenger RNA biogenesis [BR:bcj03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     BCAL1879 (hfq)
Chromosome and associated proteins [BR:bcj03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    BCAL1879 (hfq)
SSDB
Motif
Pfam: Hfq LSM Hfq_1
Other DBs
NCBI-ProteinID: CAR52179
UniProt: B4EAW4
LinkDB
Position
1:complement(2074649..2074888)
AA seq 79 aa
MSNKGQLLQDPFLNALRKEHVPVSIYLVNGIKLQGNIESFDQYVVLLRNTVTQMVYKHAI
STVVPARPVNFHPDAEASS
NT seq 240 nt   +upstreamnt  +downstreamnt
atgagcaacaaagggcaattgttacaagacccgtttttgaacgcactgcgcaaagagcac
gttcccgtttcgatttacctcgtcaacggcatcaagcttcaagggaacattgaatcgttc
gaccagtacgtcgtgttgctccgtaatacggtgacccagatggtttacaagcacgccatc
tcgacggtcgtgccggcgcgcccggtgaatttccacccggacgcggaagcctcgtcctaa

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