Borrelia coriaceae: bcCo53_000379
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Entry
bcCo53_000379 CDS
T08173
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
bcoi
Borrelia coriaceae
Pathway
bcoi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bcoi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
bcCo53_000379 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bcoi03021
]
bcCo53_000379 (rpoB)
03400 DNA repair and recombination proteins [BR:
bcoi03400
]
bcCo53_000379 (rpoB)
Enzymes [BR:
bcoi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
bcCo53_000379 (rpoB)
Transcription machinery [BR:
bcoi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
bcCo53_000379 (rpoB)
DNA repair and recombination proteins [BR:
bcoi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
bcCo53_000379 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
UPA16250
LinkDB
All DBs
Position
complement(402951..406418)
Genome browser
AA seq
1155 aa
AA seq
DB search
MIKRVHLGQGKAKEILDLPNLIEIQLNSYEKFLQLDRLKNNKPLLNEGLESVFRDTFPMK
SSNGEVSLEYEKYYIEYDSLSFTEKECKRKGQSYEAVLKIRLNLQFLTTGEIRQKDVYMG
TIPLMTDRGTFIVNGAERVIVSQIHRSPGVVFYKEKDLYYARIIPYRGSWLEFEIDSKKD
YLYVKIDRKKRILVTLFLRALGLDTREKIIETFYKIRKIEVNEGTKREITGQYLAVNIVI
KENMTYRAGDKITLQDIEDFLQNGVKEIDLIDFDGYDSVPGKYFISSDVILNCFEKEDAY
FSLKDGFKELSRESVMLAVYSVLLPGEPISIDNAENDLRTVFFSEKRYDLGHVGRYKLSK
KFGLDDLTTSVLTMTDIVNTISHLLRIYDGHDVLDDIDHLGNRRVRSVGELLTNIYKGAM
SRVEKIAKDRMSNKEVFNLKPQELISVKPIVSAVKEFFATSQLSQFMDQVNPLAELTHKR
RLNALGPGGLSRDRAGFEVRDVHYTHYGRMCPIETPEGPNIGLIVSLATYAKVNDYGFLE
TPYRKVIDGKVTDEIEYLSAIDEEKKCIAQANAAVNDANNYIDDLISVRVSGDYTTMIPK
NIDFMDVSPRQLISVSSALIPFLEHNDANRALMGSNMQRQAVPLLFPQPPIVGTGMERIV
AKDSGVVIKAKRAGTVVLATSQKVIIKPEDATDENDLDEYELAKYERTNQDTSFNHSVLV
REGLVVQKGEIIADGPATRYGELALGNNLLVGFIPWNGFNYEDAILISERIVKEDLYTSI
HIKEFSIEVRETKLGPEKVTADIPNVSGKILNKLDENGIVRIGTYVKPGDILVGKVTPKS
EGDISPEFKLLTSIFGEKAKDVKNNSLKVPHGTEGTVIDVQRITKDDVGNLPPGVDEILK
VYVAKKRRLKEGDKMAGRHGNKGVVAKILPVEDMPYLADGTPLDICLNPLGVPSRMNIGQ
LMESQLGLAGKYLNEYYDVPVFESATNECIQEKLKKARFNETSKAILYDGYTGEPFENEV
MVGIIYMLKLHHLVDDKMHARSTGPYSLVSQQPLGGKAQFGGQRLGEMEVWALEAYGAAH
TLQELLTVKSDDMSGRVKIYENIVKGIPTNVSGIPESFNVLMQELRGLGFDLSIYDDKGN
QIPLTEKEEELINKT
NT seq
3468 nt
NT seq
+upstream
nt +downstream
nt
atgataaaaagggttcatctaggacaaggaaaagccaaagaaatcttagacttacctaac
ctaatagaaatacaattgaattcttatgaaaaatttttgcagcttgatagattaaaaaat
aataaacctttgcttaatgaaggccttgaatctgtttttagggacacttttcctatgaaa
agtagcaatggtgaagtttcgcttgaatatgaaaaatattatattgaatatgattctctt
agttttactgaaaaagaatgcaaaaggaaggggcagagttatgaggctgttttaaagata
agattaaatttgcagtttctaacaacaggagagataaggcaaaaagatgtctatatgggg
actattcctttgatgactgatagaggaacttttattgttaatggtgctgaaagagtaatt
gtatcgcaaattcacagatcccctggagttgttttttacaaggaaaaagacttatattat
gctcgtattattccttatcggggttcttggttagaatttgagatcgattcaaagaaagat
tacctttatgttaagatagacagaaaaaaaagaatacttgttactcttttcttaagagct
ttgggtcttgatactagagaaaaaataattgaaacgttttataagattagaaaaattgag
gtaaatgaagggactaagagagaaattacagggcaatatttagcggtaaacattgttata
aaagaaaatatgacttatcgggcaggtgacaagataactttgcaagatattgaagatttc
ttgcagaatggggtaaaggagatagaccttattgattttgatggttatgatagtgttcct
gggaaatattttatcagttctgatgttattttgaattgtttcgaaaaagaagatgcttat
ttctctttaaaggatggctttaaagagctttcaagggaatctgtaatgcttgcggtttat
agtgtgcttttacctggagagcccatatccattgataatgctgagaatgatttaagaaca
gtatttttttcagagaagagatatgatcttggtcatgtaggacgatacaaactttctaaa
aagtttggtcttgatgatttgacgacctcagttcttactatgacagatatagtaaatacg
atatctcatcttttaagaatatatgatgggcatgatgttcttgacgatattgatcatctt
ggaaatagaagagttcgttctgttggtgagttgcttacaaatatatataaaggtgcaatg
tcaagggtagagaaaattgcaaaggatagaatgtctaataaagaggtgtttaaccttaag
ccgcaagaattgataagtgttaagcctattgtttctgctgttaaagaattttttgcaact
agtcagctttcacaatttatggatcaggttaatcctttagctgaattgacccataaaagg
cgtcttaatgctttaggtcctggaggactatcaagagatcgtgcaggttttgaagtaaga
gatgttcattatactcattatggtaggatgtgtcctattgaaactcctgagggaccaaat
attggtcttattgtgtctttagctacttatgcaaaggtcaatgattatggttttttagag
actccttatagaaaagtgattgatggcaaggttactgatgagattgagtatttgtctgca
attgatgaagagaaaaaatgtattgctcaagcaaatgctgctgttaatgatgcgaataac
tatattgatgatttaatttctgttagggtttctggtgattataccacaatgattcctaaa
aatatcgattttatggatgtttcacctagacagttaatttctgtttcgtcagcattaata
ccttttcttgaacataatgatgcaaaccgtgctcttatgggttcaaatatgcaacgacag
gcagttcctttattatttccacaacctcctattgttggcactggtatggaaagaatagta
gcaaaggattctggtgttgtaattaaggccaagagagcaggcacagttgtattagcaacg
agtcaaaaggtgattatcaagcctgaggatgctactgatgaaaatgatttagatgaatat
gaacttgctaaatatgaaaggacaaatcaggatacttcttttaatcattcagttttagtt
agggagggcctggtagttcaaaagggtgagatcatagctgatggtcctgctactaggtat
ggcgagttggcacttggaaataatttgttggttggttttattccttggaatggatttaat
tatgaagatgctatattaatttctgagcggattgtaaaagaagatctttacacatcaatt
catattaaagaatttagtattgaggtgagggaaactaagcttggtcctgagaaagttaca
gcagacattcctaatgttagtggaaaaatattaaataagcttgatgagaatggaattgta
cgaataggaacttatgtaaagccaggtgatattttggtcggtaaagttacaccaaaatca
gaaggggatattagccctgaatttaagcttttgacatctatttttggggagaaagctaaa
gatgttaagaataattcactcaaagttccacatggtactgaagggaccgtaattgatgtt
cagaggatcactaaggatgatgttggcaatcttccacctggtgttgatgaaatattaaaa
gtttatgttgccaagaaaaggagacttaaagagggtgataagatggcaggaagacatgga
aataagggtgtagttgccaagattcttcctgttgaagatatgccatatcttgcagatggg
actcctcttgatatatgtttaaatcccttaggagtgccttctcgtatgaatattggacaa
ttaatggagtctcagctcggtcttgctggtaaatatcttaatgaatattatgatgttcct
gtgtttgaatctgctacaaatgagtgcattcaagaaaagttaaaaaaagccagatttaat
gaaacatcaaaagcaattttatatgatggatatacaggggaaccattcgaaaatgaggta
atggttggaattatatatatgcttaagttacatcaccttgttgatgataagatgcatgca
agatctacaggtccttattcacttgtatcgcaacaacctcttggaggaaaggcgcagttt
ggtggtcaaaggcttggagagatggaagtttgggcacttgaagcttatggagctgctcat
actttgcaagagcttttaacagtaaaatcagatgatatgtcaggtagagttaaaatatat
gaaaatattgttaaaggtattcctaccaatgtgtctggcattcctgaatcttttaatgtt
ttgatgcaggagctaagagggcttgggtttgatttatcaatttatgatgataagggcaat
caaattcctttaacagaaaaggaagaggaattaattaataagacttag
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