Bradyrhizobium daqingense: LPJ38_29010
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Entry
LPJ38_29010 CDS
T07756
Name
(GenBank) ATP-dependent helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
bdg
Bradyrhizobium daqingense
Pathway
bdg03420
Nucleotide excision repair
bdg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bdg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LPJ38_29010
03430 Mismatch repair
LPJ38_29010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bdg03400
]
LPJ38_29010
Enzymes [BR:
bdg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LPJ38_29010
DNA repair and recombination proteins [BR:
bdg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LPJ38_29010
MMR (mismatch excision repair)
Other MMR factors
LPJ38_29010
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
AAA_30
HHH
AAA_12
RecR_HhH
Motif
Other DBs
NCBI-ProteinID:
UFS87647
LinkDB
All DBs
Position
6080811..6082868
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AA seq
685 aa
AA seq
DB search
MATYLDTLNAEQRRAVEHGVAEGATVGAPLLVIAGAGSGKTNTLAHRVAHLIVAGADPRR
ILLMTFSRRAAAEMAGRVERIARKVLGENNAAIMRDALTWAGTFHGIGARLLREYAERIG
VDPAFSIHDREDSADLMNLVRHERGLSKTESRFPAKGTCLSIYSRCVNAEMEIEKVLGVH
YPWCAGWAAELKGLFAAYVEAKQAQHVLDYDDLLLYWSQMMSDALITEEIGGRFDHVLVD
EYQDTNRLQSSILLALKPDGRGLTVVGDDAQSIYSFRAATVRNILDFPQRFSPRAEMITL
DRNYRSTHAVLAAANGVIGLARERFTKNLWTDRTSGRKPQLVTVHGEADQARYIVEEVLA
NREQGALLKHQAVLFRTSSHSGPLEIELTRRNIPFVKFGGLKFLDAAHVKDVLALLRFAE
NPRDRVAGFRILHLLPGVGPATAQRVLDQMAESSDPLNALGQLPVPARSGSDWTDFVRTT
QNLRYSEWPVDLERVRLWYEPHLDRIHEDSETRRSDLMQLEQIARGYASREKFLTELTLD
PPDATSDKSGRPLRDEDYLILSTIHSAKGQEWKSVFVLNVVDGCMPSDLGAGTSAELEEE
RRLLYVAMTRAKDDLHLVVPQRFFVHGQAAKGDRHVYASRTRFIPEQLVYLFERAAWPKA
AAAGARAAAQGPKIDIGARMRGMWR
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
gtggcgacatatctggacacgctcaatgcggagcagcgccgcgccgtcgagcatggcgtg
gccgaaggggcaaccgtgggcgcccccttgctcgtcattgccggtgccggctccggcaag
accaacaccctcgcccaccgcgtcgcgcatctgatcgtcgccggcgccgatccgcgccgc
atcctgctgatgacgttctcccgccgcgccgcggccgagatggccggccgggtggaacgc
atcgcccgcaaggtgctgggtgagaacaacgccgcgatcatgcgcgatgcgctgacctgg
gccggcaccttccacggcatcggcgcgcgcctcctgcgggaatatgccgagcggatcggc
gtcgaccctgccttcagcatccacgaccgcgaggattccgccgacctgatgaatctggtc
cggcacgagcgcggcctgtccaagaccgagagccgctttccggccaagggcacctgcctg
tcgatctactcgcgctgcgtcaacgccgagatggagatcgagaaggtgttaggggtgcac
tatccctggtgtgcggggtgggcggccgagctgaagggcctgttcgcggcctatgtcgag
gccaagcaggcccagcacgtgctcgattacgacgacctcttgctctactggtcgcagatg
atgagcgacgcgctgatcactgaggagatcggcggccgcttcgatcacgtgctggtcgac
gaataccaggacaccaaccgcctgcaatcctcgatcctcctcgcgctcaagcccgacggc
cgcggcctcaccgtggtcggcgacgacgcccaatcgatctattcgttccgcgcggccaca
gtgcgcaacatcctcgactttccgcagcgcttctcgccgcgcgccgagatgatcacgctc
gaccgcaattaccgctcgacccacgcggtgcttgctgccgccaacggggtcatcggcctc
gcccgcgagcgcttcacgaagaacctctggaccgaccgcacctccggccggaaaccgcag
ctcgtcaccgtacacggcgaggccgaccaggcccgctacatcgtcgaggaggtgctggcc
aaccgcgagcaaggcgcgctcttgaagcaccaggcggtgctgttccggacctcctcacat
tcaggtccgctggagatcgagctgacccgccgcaacatccccttcgtcaagttcggcggg
ctgaaattcctcgacgccgcgcacgtcaaggacgtgctggcgctgctgcgtttcgccgaa
aatccgcgcgaccgcgtcgccggattccgcatcctgcatctcttgcccggcgtcggcccc
gcgaccgcgcagcgcgtgctcgaccagatggccgagagcagcgatccgctcaacgcgctg
ggccagcttccggtgccggcgcgtagcggttcggactggaccgacttcgtccgcacgacc
caaaatctgcgctattcggaatggcctgttgatctcgagcgcgtacgtctgtggtacgag
ccgcatctcgatcgcatccacgaggattccgagacgcgccgctccgatctgatgcagctc
gagcagatcgccaggggctatgcctcgcgcgagaaattcctgaccgagctcacgctcgat
ccgccggatgcgaccagcgacaaatccggccggcccctgcgcgacgaggactacctgatc
ttgtccaccatccactcggccaagggccaggagtggaagtcggtgttcgtgctcaacgtc
gtcgacggctgcatgccctccgatctcggcgccggcaccagcgccgagctcgaggaggag
cgccgcctgctctatgtcgcgatgacacgcgccaaggacgatctccacctcgtcgtcccg
cagcgcttcttcgtccacggccaggccgccaagggcgaccgccacgtctacgcctcgcgc
acccgcttcattccggagcagctggtctacctgttcgagcgcgccgcctggccgaaggcc
gcggcggccggggcacgtgctgcggcgcagggcccgaagatcgacatcggcgcgaggatg
cgcgggatgtggcggtag
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