Brachypodium distachyon (stiff brome): 100840701
Help
Entry
100840701 CDS
T01717
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
bdi
Brachypodium distachyon (stiff brome)
Pathway
bdi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bdi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100840701
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bdi03019
]
100840701
Messenger RNA biogenesis [BR:
bdi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
100840701
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
100840701
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
ARM_Cnot1
DUF3819
CNOT1_HEAT
NOT1_connector
Motif
Other DBs
NCBI-GeneID:
100840701
NCBI-ProteinID:
XP_010229360
LinkDB
All DBs
Position
1:74724044..74746825
Genome browser
AA seq
2414 aa
AA seq
DB search
MLPPSPDVLAAEVRLMLQGATDSNRDSIRRELCQLVDNGLDGCVLLLQVCLDEVLLNAGE
EKNFQWKHDLLSAIFRYCLDKTYFCTCFCEAVMMITSTDGLLETLSSVLELSTAEKVGIG
LALSDSQNSVMKQKGQQFAIAQIEELCLNPIQSVSNDQIHEIVVFLQQTDGLSKHMDTFS
SITSLLEVGQSPFFAPIPKKQRDIQSTNPSRHLDLYFNSTSADFESLLSEIGKEISMADT
VTELGYGCTVDIAHCMEMLSAFEPLDNVAISKLLGAVIGNHNSLGEAQNSTHATFVSAIR
NSPTSNSPQLTTWNTDVLVDSINAVAPSTNWVQVMENLDHGGFSIPDEAGFYLLMSIYAR
ACKDRFPLHAVCGSMWTNTDGQISFLKHAVSAPATMFTFAHSSRLLALPEFASLSPGNSA
WFCLDLLEVLCQLAEVGHTKPVREMLEYPLEHCPELLLVGLGHINTAYNLLQFEVLSCVF
PAILKDAAKSNVVNSLWHINTCLTLRGFVDAHSDPSCLLRIVDVCQDMKILSAVLGSTPF
AFSIKLAAAASWKDHNHLEKWLTEKLIIYKDSFLKECVNFLKETMSAASYVVEGTMEQPQ
VSVINKYLEACHPFMKVLQSHLGLLLSNHLSDELRELYTLYESRNHGSVVRDTPTSEGGS
DDVEVEANAYFQQMFSGQISIDSMIQMLARFKESPEKREQLIFNCMITNLFEEYKFLTKY
PDKQLKLAAVLFGSLIKHQLVAHLGLGIALRAVLDALRKSLDSKMFLFGTIALEQFMDRV
VEWPQYCNHILQISHLRENHADMVYAIERALASISSGQNEPNVGNLLSAEQHVSGSSSME
TMEVSEPSWQFMGTSPTQLGRTLSSFPLQQRQPEPGVLGDRSMVSMGTSQNNSTLPSQPP
VPLTPADSTIDLKATALAHSTNMATTGFLRPRSTPTGLPRQHSYVTGFGAALNIETLVAA
AEQRDRPIETPPSEVQDKILFMINNISTSNLEAKANEFNQVLQEQYYPWFAQYMVMKRAS
IEPNFHELYLKFFAKLNSRSLSKEMLKATYENCKVLLRSDLIKSSSEERSLLKNLGSWLG
KFTIGRNQTLRAKEIDPKSLIVEAYEKGLMIAVIPFTSKILEPCQSSIVYRPPNPWTMGI
LSLLAEIYNLPNLKMNLKFDIEVLFKNLSVDMKDVKPTSLLRDREREVEGNPDFSNKDVA
SQIPVAAEVSSGIIPPMNHAELQPQVNSTSRAMSLPSILNQYTAPVRLPPNSMAEDDKIA
SLMPEQVPLHTFTQTPLASLSPSPLSLSQLLSLIPHEEIHFKINTKLGSLGSQLQFSKII
GVALDKAIKEIILPVIERSVTTASKTTKELVLKDYATKSDINSANRSGRLMVGTLAGSLA
HVTCKEPLRVALSSHLRSLIQNLTSNSETVDQVTDILINDNLDLGCAIIESVATRQAVDL
IDGEITQSFSQQRRKRDAAGPAYYDSFIYAQVPFAPVPEVLRTKPESAAQQRVYEEFVHV
WQRRSQSIGAAGSSSASTAAVSSNFGVPRAYSPNSAPATSSTILTSQTAHLTLTQPTELV
SEELIPGAAQLSSDSPSQIGTSDSSGWLGGTIASASTSPPPVTSNDLPVGGTTVTADDLS
AMMFPPSTISVDNFGLVLPDPLNTDDALKRYRLISQKLEALIAKDGKDSEIQSVIAEVPD
LLVKCVSPDEAALAVAQKVFKSLYDNTSNSGRVMWFVATLVAIRDVCKLVVKELTNWVIF
SDDEKKFNIEIIIALIRSDLLSLGEYNDYLARLIDGGRNRIATEFAMSLVQKLISQNSVC
ISELFSVVDALSKISRRPGSPESLQQLIEKSRHKANTAPTFDFGMDEKVRQPKDKKVLSS
QTNKEENSVNDITLAESVTFHDQVAHLYTEWCQVCDHPSACDAAYSHFVMQLEHMGLLKG
DESTERFIRILTELAVTRSLVSEQIVAPGGLSQQSSQQPHISYFPIDSYSKLVSMVLKHS
SVEMGPNEGSLLPKILSVTVKIIQKDAEEKKSLFNPRPFFRLFINWLNDLSSSDPHHDGA
NFQVLTAFANAFHLLQPLRIPSLSFAWLELVSHRTFMPRLLMCNSQKGWPFFQRLLVDMF
KFMEPYLRNADLLEPVRLLYKGTMRVLLVLLHDFPEFLCDYHFSFCDVIPTSCIQMRNVI
LSAYPHSMRLPDPSTPNLKIDLLAEISIAPRIMSDIGGALKLKHMKTDVDEYLKRPEGSS
FLSDIKQKLLLPQNEAIVAGTCYNVPLINSLVLYVGIQAVQLQENKVNALATTPMDIFQI
ATATEIFRNLATNLDTEGRYLLLNSIANQLRYPNNHTHYFSFIVLYLFAEATQDKIQEQI
TRILLERLIVKRPHPWGLLITFTELVKNPRYNFWNRSFTHSAPDIQKLFEAAAKSCAAKA
AVEGVPDVNRSTMA
NT seq
7245 nt
NT seq
+upstream
nt +downstream
nt
atgctcccgccgagccctgacgtcctcgccgccgaggtgcggctgatgctccagggcgcc
accgactccaaccgcgattccattcgccgcgagctctgccagttagttgacaatggtctg
gatggatgtgttttgctgctccaagtctgtttggatgaagtgttgttgaatgccggggag
gagaagaacttccagtggaaacatgatcttctctccgccattttcagatattgtctggat
aaaacatacttctgtacttgtttttgtgaagcagtgatgatgataacttctaccgatggc
ctccttgagaccctgtcgagtgtcctggaactctcaacagccgagaaagtcggtattggt
cttgcattgtctgattctcagaattcagtcatgaagcagaaagggcaacaatttgcaatt
gctcaaattgaggagttgtgcttgaatcctatccaatcggtatcaaatgaccaaattcat
gaaattgttgtcttccttcaacagactgatggcttgtcaaagcatatggatacttttagc
agcattacttctctgctagaagtcgggcagagtcctttttttgctcctatccccaaaaag
cagcgtgatattcagtcaacaaatccttctagacatttggatctgtactttaatagcaca
agtgctgactttgagtcacttctttctgaaattggtaaagaaataagtatggcagacact
gtaaccgagttgggttatggatgtactgttgacattgcacactgtatggaaatgctttct
gcttttgagccccttgataatgtggcaatatctaagttgcttggggcagttattggcaat
cacaacagtcttggagaggcccagaatagcacacatgcaacctttgtatctgctattcga
aatagccctacgagcaactcaccccaattaactacatggaacacggatgttcttgtggat
tccatcaacgcagttgccccgagtactaactgggtccaagtaatggaaaatcttgaccat
gggggtttcagtattcctgatgaagcaggtttctatttgctgatgtctatatatgctcgt
gcctgcaaggaccgattcccgcttcatgctgtttgtgggtcaatgtggacaaatacagat
ggccagatatcattcttaaagcatgccgtttctgctcctgctactatgtttacatttgca
cactcttcgaggctgttggcacttccggagtttgcaagtcttagtccaggtaatagtgct
tggttctgccttgaccttctagaggttttatgccagcttgctgaagtcggacacactaag
ccggtgcgagaaatgctcgagtaccctttggaacactgccctgagctcttacttgttggc
cttggacacatcaacactgcgtataatctcctgcaattcgaagtactgtcctgtgtgttt
cctgcaatactgaaggacgctgcaaagagcaatgtggtgaattctctctggcatattaac
acttgcctcacccttcgaggttttgttgatgctcattctgatccgagctgccttctgaga
attgttgatgtgtgtcaagacatgaagatcctatctgctgtccttggttctactccattt
gcattcagcattaagttggctgctgctgcttcttggaaagatcacaaccatcttgagaaa
tggctgactgaaaagttaattatatacaaggatagttttctcaaggaatgtgttaatttc
ttgaaagaaactatgagcgccgcatcttatgtggtagagggtaccatggagcaacctcaa
gttagtgttatcaataaatatttggaggcttgccatccttttatgaaggttctccagtcc
cacttagggctgctcttatccaatcatctttcggatgaactaagggaattgtatacgttg
tatgaatcaaggaatcatggttctgtagtaagggatacccctacctcggagggaggttca
gatgatgttgaagtagaagctaatgcatattttcagcagatgttttctggacagataagc
attgattctatgatacaaatgctggctcgcttcaaagaatctcctgagaagagggagcaa
ttgattttcaactgtatgatcacaaatctgtttgaggaatacaagtttcttacgaagtat
cctgataagcagctaaaactagcggctgtgctgtttggctcccttattaaacatcaactt
gtggctcacctcggactagggattgctctacgtgctgttcttgatgccttgcgcaagtct
cttgattcaaagatgtttctgtttggtacgatagcactggaacagttcatggatcgtgta
gtagagtggccacagtactgcaatcacatattgcagatttcacatcttcgtgaaaatcat
gctgacatggtctatgcaattgagcgagcccttgccagtatttcatcaggtcaaaacgag
cccaatgttggcaacttgctttctgcagagcagcatgtttctggctcgtcatcaatggaa
accatggaggtttctgaaccatcatggcagttcatggggacatccccaactcagctagga
agaacactttcttctttcccgttgcagcaaaggcaaccagaaccaggtgttcttggggac
aggtctatggtctccatgggcacctctcagaataatagcactttacctagtcaacctcca
gttcctttgacgcctgctgattcgactattgatttaaaggcaactgcactagctcactct
acaaacatggcaactactggttttctgcgtcctcgaagtactcccacaggcttgcctcgg
caacattcctatgtgacgggatttggagctgctttaaatatagagacacttgtagcagca
gcggaacaaagagatagacccatcgagactcctccatctgaagttcaggacaagatcttg
tttatgattaacaatatatccacctctaatttggaagcaaaggcaaacgaatttaatcaa
gtgcttcaggaacagtattatccttggtttgcacaatacatggtcatgaaaagggcaagc
atcgaaccaaattttcatgagttgtatctgaagttctttgccaaacttaactcaagatcc
ttgagtaaggagatgctcaaagctacgtacgagaactgcaaggttctgttaagatcagat
cttatcaaatctagttctgaggaacgttccttactaaagaatttgggcagttggttggga
aaattcaccattggaaggaatcagacactaagagctaaggagattgacccaaaatctctt
attgtggaggcatatgagaaaggactgatgattgctgtaattccattcacttcaaagatt
ctcgaaccttgccagtcaagtatagtatatcgtcctcctaatccctggacaatgggaatt
cttagtctactagctgagatctataacctaccaaacctcaagatgaatctcaaatttgac
attgaggtcctgtttaagaacctcagcgtggatatgaaagatgtaaaaccgacttccctt
cttagagatcgagaacgtgaagttgagggaaacccagatttttcaaacaaagatgttgca
tctcaaatcccagtggctgcagaagtatcttcgggcataatccctccaatgaaccacgcg
gaactgcagcctcaggtcaatagcacttcccgtgccatgagcctccctagtatattgaat
cagtatactgctcctgttcgtcttcctcctaacagcatggcggaagatgacaaaattgct
tcattaatgcctgagcaagtccccttgcacacctttacccagacaccattggcatcactg
tcaccatctcccctctctcttagtcagcttttgtcattgattccacatgaggaaatacac
ttcaaaataaatacaaaacttgggtctcttggctcacaattgcagttcagcaaaatcatc
ggtgtggcgttggataaggctatcaaagagataattctccctgtaattgaaaggagtgtt
acaacagcaagcaaaactacaaaagaacttgtcctcaaggattatgcaacgaaatcggat
ataaattctgcaaatcgttctggtcgtttgatggtcgggacattagctggaagtctagct
catgttacttgcaaggagcctcttcgtgttgcactatcgtctcatcttcgaagccttatt
caaaaccttactagtaacagtgaaactgttgaccaagtaaccgatattctaatcaatgac
aatttggatcttggctgcgcaattatcgaatctgtagccactcgccaggctgttgatttg
attgatggcgaaataactcaatcattttcacaacaaaggagaaaaagagacgcagctggt
cctgcatattatgattcttttatttatgctcaagttccatttgcccctgtacctgaagta
cttcgtactaagccggagtctgctgcccaacaacgagtgtatgaggagtttgttcatgta
tggcagaggcgcagccaaagtattggtgctgccggttctagttcagctagtacagctgct
gtgtcgagcaattttggtgtacctcgagcttacagcccaaattcagcaccagcaacctcc
agcactatcttgacatctcaaacagctcatcttacactaactcagcctacagagctggtt
tctgaggaattaattcctggtgccgcacaactttctagtgattctccttctcaaattggg
accagtgattcttctggctggcttggcggaaccatcgcctctgcatccacatctccccct
ccagtgacatctaatgaccttcctgtgggaggaacaacggtcacagctgacgatttaagt
gctatgatgttccccccatctacaatttctgttgacaattttgggttggttttgcctgat
cctttgaacactgatgatgctttgaagagatacagactaatttcacaaaagctggaagcc
ttgattgccaaggatggtaaagattcggaaatccagtctgttattgcagaagttcctgat
cttttagtcaaatgtgttagcccggatgaggctgcattagctgttgcacaaaaggttttc
aaaagtttatatgacaacacatcaaatagtggccgtgtcatgtggtttgtagcaacttta
gttgcgatacgagatgtctgcaagcttgttgttaaagagctaacaaattgggtgatattt
tctgacgacgagaagaagtttaacattgaaattattattgcccttattcgttctgatttg
ctgagtcttggggaatacaatgattatttggcaaggctaattgatggtggaagaaacagg
atcgcaacagaatttgccatgtcacttgtccagaaattgatttctcagaactctgtttgc
atctcagaacttttcagtgttgttgatgcactgtcaaagatttcaaggaggccaggttca
cctgagtccttgcaacaattgattgagaaatcaagacataaggccaacactgctcctact
tttgattttgggatggatgaaaaagtcagacaaccgaaggataaaaaggtcttgtctagc
caaacaaataaagaggaaaacagtgttaatgatatcactctagctgagtctgttactttc
catgaccaggttgcacacctatatactgagtggtgtcaagtatgtgatcatccaagtgct
tgtgatgcggcatatagtcattttgttatgcagttggaacatatgggtctgctgaaggga
gatgaatccactgaacgcttcatccgaattctcacggaacttgctgtgacacgctctcta
gtctctgagcaaattgttgctcctggtggattgtctcagcagtcatcacaacaaccacat
atatcttatttccccattgattcatattcgaagcttgtgtctatggtactcaagcactct
tcagtggagatgggaccaaatgaaggcagtcttcttcccaagattctgtcagtgacagtt
aagatcattcagaaagatgctgaagagaagaaatctttattcaaccctcgaccattcttc
cgtctgtttataaattggctgaatgaccttagtagttctgacccccatcatgatggcgct
aattttcaggttttgactgcatttgcaaatgcattccatttactgcagcccttgaggatt
cctagcttgagctttgcttggcttgagttggtgagtcacagaacattcatgccaagactg
ctgatgtgcaattcgcaaaaggggtggcccttttttcaacggctgcttgttgatatgttc
aaattcatggagccatatttgagaaatgctgaccttttagaaccagtgcgccttttgtac
aaaggaactatgagggtgctgcttgtactactacatgattttcctgaatttctgtgtgac
tatcacttcagtttctgtgatgtgatccctaccagctgcattcaaatgcgcaatgtcatt
cttagtgcttatccacacagcatgagacttccagatccgtcgactcctaatttgaagatt
gatctgctagctgaaatttcaatagctccacgaatcatgtcagatattggcggtgctctg
aagttgaagcatatgaagactgatgttgatgagtatcttaagagaccagaaggctcttcc
tttctgagtgacattaagcaaaagctgctgctgcctcaaaatgaagctattgttgctggg
acatgctacaatgtgcctctgattaattcgcttgttctatatgtgggcatccaagctgtg
caactgcaagagaacaaggttaatgcattggcaacaaccccaatggatatttttcagatt
gcaactgcaactgaaatattcagaaatcttgcaacaaacttggatacagagggacggtac
cttcttttgaactctattgctaaccaattgcgataccccaataaccacacacactacttc
tccttcatcgttctgtatctatttgctgaagctacccaggacaaaatccaggagcagata
actaggatccttttggaacgactgatagtgaaacgtcctcatccttggggattactcatt
actttcaccgagctggtaaagaaccctcgttacaacttctggaaccgatccttcacacac
tcggcgcctgacattcagaagctgtttgaggctgctgcgaagtcctgtgctgcaaaagct
gctgtcgagggtgtccctgatgttaaccggtcaacgatggcctga
DBGET
integrated database retrieval system
