KEGG   Brachypodium distachyon (stiff brome): 100843890
Entry
100843890         CDS       T01717                                 
Name
(RefSeq) sm-like protein LSM2
  KO
K12621  U6 snRNA-associated Sm-like protein LSm2
Organism
bdi  Brachypodium distachyon (stiff brome)
Pathway
bdi03018  RNA degradation
bdi03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:bdi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    100843890
  09123 Folding, sorting and degradation
   03018 RNA degradation
    100843890
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bdi03019]
    100843890
   03041 Spliceosome [BR:bdi03041]
    100843890
Messenger RNA biogenesis [BR:bdi03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     100843890
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     100843890
Spliceosome [BR:bdi03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    100843890
 Complex C
  U2 snRNP components
    100843890
SSDB
Motif
Pfam: LSM SM-ATX LSM14 DUF1256 DUF150_C
Other DBs
NCBI-GeneID: 100843890
NCBI-ProteinID: XP_003573488
UniProt: I1I1J6
LinkDB
Position
3:complement(15084329..15086911)
AA seq 93 aa
MLFFSYFKELVGKEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC
FIRGSVVRYVLLPQDGVDIDILHDATRREARGG
NT seq 282 nt   +upstreamnt  +downstreamnt
atgctgttcttctcctacttcaaggagctcgtggggaaggaggtgacggtggagctcaag
aacgacctggccatccgcggcacgctccactcggtcgatcagtacctcaacatcaagctc
gagaacacccgggtcgtcgaccaggacaagtatcctcacatgctctcggtgcggaactgc
tttatcaggggatcagtggtgcggtacgtgctgcttccgcaggacggggttgacatcgac
atcctccatgatgccaccaggagggaggcacgcggaggctga

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