Bdellovibrio sp. qaytius: CIK05_12385
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Entry
CIK05_12385 CDS
T05880
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
bdq
Bdellovibrio sp. qaytius
Pathway
bdq03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bdq00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CIK05_12385 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bdq03021
]
CIK05_12385 (rpoB)
03400 DNA repair and recombination proteins [BR:
bdq03400
]
CIK05_12385 (rpoB)
Enzymes [BR:
bdq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CIK05_12385 (rpoB)
Transcription machinery [BR:
bdq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CIK05_12385 (rpoB)
DNA repair and recombination proteins [BR:
bdq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CIK05_12385 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
AZZ37558
LinkDB
All DBs
Position
complement(2556543..2560718)
Genome browser
AA seq
1391 aa
AA seq
DB search
MDKTPVTASNLRIRKSFAKNKQVIEIPNLIELQKKSYEAFLLKEVDADRRGNDGLNGVFK
SVFPISDFNNTSSLEFVGYTLEPSKYDVDECRQRGMTFAAPVKVTLRLIVFDVDEETEAR
SIRDVKEQEVYLGEIPLMTANGSFIINGTERVVVSQLHRSPGVFFDHDGGKNNASGKLIY
SARVIPYRGSWLDFEFDQKDVIHVRIDRRRKFPATILLKALGMNTEQLLEYFYDLDEIFV
KGKQLFRKLDIERMSGQRAIADIIDPTNGEVIVKAGRRITRAIVKKVKDLGLTEVEVQPQ
DLEGKVLAKPLIDESTGEIIADANTELSVSLIKKALSAGIENFYLIFFDGLTVGPFLRNT
LLVDKVGNQDEALIEIYKRLRPGEPAVMEAAQAYFNRLFFDPEAYDLSEVGRIKINHKFG
ISMDECPPSFRVLTHKDILSTVKTLIDLKNGRGVVDDIDHLGNRRVRSVGELLENQYRIG
LVRMERAIKERMSLQDVETMMPHDLVNAKPVNAVVKEFFGSSQLSQFMDQTNPLSEITHK
RRLSALGPGGLTRDRAGFEVRDVHATHYGRICPIETPEGPNIGLIASLSTYARINSYGFI
ETPYKKVEGGKVSEAITYMSALEESGHFKAQAPTDAKFNKELAPGNHTVRRDGEYELVDR
EKVTLQDVSPSQLVSIAASLIPFLEHDDANRALMGSNMQRQAVPLLKSRAPLVGTGVERL
VARDSGTSIVANNDGIVEEVDASRIVVRRLAKGGELGANVDIYNLTKYQRTNQNTCFNQK
PIVKKGDRVSKTDIIADGPSTELGELALGQNIRVAFTPWMGYNFEDSILISERLLQDDTY
TSVHIEEFECVARDTKLGKEEITRDIANVGEEALKDLDSSGIIRIGAEVKPGFILVGKVT
PKGETQLSPEEKLLRAIFGEKAGDVRDTSLRAPSGVYGTVIDAQVYSREGSDRDERLGLI
IEEKRKKLEKDLAIEQNVIKNNAIEKLRDIVVGKKTTGILLNEDGTQKLLNKGQDITNAD
LETIPFELLSYIPLEQEVEYQVNKIIDGARNQLDQVKLVFNEKIDRLKKGDELPPGVIKM
VKVYVAIKRKLQVGDKFAGRHGNKGVVSKVLAQEDMPYLADGSPVDMVLNPLGVPSRMNI
GQILEVHLGWAAHNLGKQIEEHLEKFDANKLRATMTDIFDDAEITAKVAQSDDESLKKMG
NALKNGIHVGTPVFDGASEQDVRNLLKKAQLPSTQSVLFDGRSGEPFTNQVTVGIMYMLK
LHHLVEEKIHARSIGPYSLVSQQPLGGKAQFGGQRLGEMEVWAIEAYGAAYSLQEFLTVK
SDDVAGRTRMYESIVRGENILEPGLPESFNVLIKELQSLALNIELVESDILTDKMEDDIV
SVEETKPMVQH
NT seq
4176 nt
NT seq
+upstream
nt +downstream
nt
atggataagactcccgtcacggcatctaatctacgtattagaaagtcattcgccaaaaac
aaacaagttatcgaaatcccgaacttgattgaactacaaaaaaaatcatacgaagcattt
cttttaaaagaagttgatgctgaccgcagaggtaacgatggtttaaatggagttttcaag
tcagtatttcctatttctgatttcaataacacgtcttcgttagaattcgttggttatact
cttgagccgtcaaaatacgacgtcgatgagtgtcgtcagcgcggtatgactttcgcagct
cctgtgaaagtaactttacgtttaatcgtgtttgatgttgatgaagaaactgaagcacgt
tcaatccgcgacgtgaaagaacaagaagtttacttaggagaaattcctttgatgactgca
aacggttctttcatcatcaacggtactgagcgcgtagttgtttctcagttacatcgttct
ccaggtgttttcttcgaccacgatggtggtaaaaataatgcttctggtaaattaatctac
tcagcacgtgtaattccttaccgtggttcttggttagatttcgaattcgatcaaaaggat
gttatccatgtccgtatcgatcgtcgtcgtaaatttccagctacaattcttcttaaagca
ttaggaatgaacactgagcaattattagaatacttctacgacttagatgaaatcttcgta
aaaggtaaacaattgttccgtaagttagacattgaacgtatgtctggccaacgtgcgatt
gctgatatcattgatccgactaatggcgaagttatcgttaaagctggtcgtcgtatcact
cgtgcgattgttaaaaaagtaaaagatttaggtttaactgaagttgaagttcaaccacaa
gatttagaaggtaaagtattagctaaacctctaatcgatgaatcaactggtgagatcatt
gctgatgcaaatactgagttatcagtatctttaatcaaaaaagcattatctgctggtatc
gaaaatttctacttaattttcttcgatggtttaactgtaggacctttcttacgtaacaca
ttgttagttgataaagttggaaaccaagatgaagcgttaatcgaaatctacaaacgtctt
cgcccaggtgagcctgcggttatggaagctgcacaagcttacttcaatcgtttattcttc
gatccagaagcatatgacttatctgaagttggtcgtatcaagatcaatcataaattcgga
atttcaatggacgagtgtcctccgtcattccgtgtattaactcataaagatattctttct
actgttaaaacacttatcgatcttaaaaatggtcgtggtgttgtagatgacatcgatcac
ttaggtaatcgccgtgttcgttctgtgggtgagcttttagagaaccaataccgtatcggt
ttagttcgtatggagcgcgcaattaaagagcgtatgtcattacaagatgttgaaacaatg
atgccacatgatttagttaacgctaaaccagtgaacgctgttgtaaaagaattcttcgga
tcttctcaattatctcagttcatggatcaaacgaatccgttatctgaaattacacataaa
cgtcgtttatctgcattagggcccggcggtttaactcgcgaccgtgcaggtttcgaagta
cgtgacgttcatgcgactcactacggtcgtatctgtccgatcgaaacgccagagggacca
aacatcggtcttatcgcgtctttatctacatatgcacgtatcaactcttacggtttcatc
gagacaccgtataaaaaagttgaaggcggaaaagtttctgaagcgatcacttacatgtca
gctttagaagaatctggtcactttaaagctcaagcgcctacagatgctaagttcaacaaa
gaattagctccaggtaaccacactgttcgtcgtgacggtgagtacgagctagttgaccgc
gaaaaagtaactttacaagacgtttcaccgtctcagttagtttctatcgccgcttcatta
attccattccttgagcatgatgatgccaatcgcgccctaatgggttcgaacatgcaacgt
caagctgtgccgttattaaaatcacgcgcaccacttgttggtacaggcgttgagcgttta
gttgctcgcgattctggaacttcaatcgttgcaaacaatgatggtatcgttgaagaagta
gatgcatctcgtatcgttgttcgtcgtcttgcaaaaggcggagaacttggtgccaatgtt
gatatctacaacttaactaagtatcaacgtacaaatcaaaatacatgtttcaatcaaaaa
ccaatcgttaaaaaaggtgatcgcgtttctaaaacagacatcatcgccgatggtccatct
acagaattaggtgagttagctctaggtcaaaacatccgcgtggcgttcacgccgtggatg
ggttacaacttcgaggattctatcttaatctctgaaagattattacaagatgacacttac
acttcagttcacattgaagaatttgagtgcgtagctcgtgatacaaaacttggaaaagaa
gagatcacacgtgatatcgccaacgttggtgaagaagcgttaaaagatctagattcttca
ggtatcattcgtatcggtgctgaagttaaacctggtttcatcttagtgggtaaagttact
cctaaaggtgaaactcaattatctccagaagaaaaacttttaagagctatcttcggcgaa
aaagcaggcgatgttcgtgatacttcattacgtgcaccatctggcgtttacggaacagtt
atcgatgcgcaagtatactcgcgtgaaggttctgatcgtgatgagcgtttaggtttaatc
atcgaagaaaaacgtaaaaaattagaaaaagatttagcgatcgaacaaaacgttatcaaa
aataacgcgatcgaaaaattacgtgatatcgttgttggtaaaaaaacgacgggtatctta
ttaaatgaagatggtactcaaaaattattgaacaaaggtcaagacatcacaaatgctgac
cttgaaacaattccgtttgaattactaagctacattcctttagagcaagaagttgaatac
caagttaacaaaatcatcgatggtgctcgtaaccaattagatcaagttaaattagtattt
aatgaaaaaattgatcgccttaaaaaaggtgatgagttacctcctggcgttatcaaaatg
gttaaagtttacgtagctattaagcgtaaattacaagttggtgataaattcgccggccgc
catggtaataaaggtgtggtttcaaaagtattagctcaagaagatatgccttacttagct
gatggttctccagttgatatggttctgaacccactgggcgttccttcacgtatgaatatc
ggtcagatcttagaggtgcatttaggttgggcagcgcacaacttaggtaagcaaatcgaa
gaacatttagaaaaatttgatgcgaataaacttcgcgcaacgatgactgacatctttgat
gatgcagaaatcacagctaaagtggctcaatctgatgacgaatcattaaagaaaatgggt
aacgctcttaaaaacggtatccacgttggtactccggtattcgacggtgcgtctgagcaa
gacgtacgtaacttattaaagaaagctcaattaccatcaacgcaatcggtattattcgat
ggtcgttctggtgagcctttcacgaaccaagttactgtgggcatcatgtacatgttaaaa
cttcaccatttagttgaagaaaagatccatgctcgttctattggaccttattctctagtt
tcgcaacagccactaggcggtaaagcgcaattcgggggtcagcgtctaggagaaatggaa
gtttgggctatcgaagcttacggtgcagcttactctctacaagaattcttaactgttaag
tcagatgacgtagcaggtagaactcgtatgtacgaaagtatcgtgcgcggtgaaaacatc
cttgaaccaggtcttcctgaatcattcaacgtattgattaaagagttacaatctttagct
ctaaacattgaattagttgagtcagatattctgactgacaaaatggaagatgacatcgtt
tctgtagaagaaactaaaccaatggttcaacactaa
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