Bactrocera dorsalis (oriental fruit fly): 105233326
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Entry
105233326 CDS
T09719
Name
(RefSeq) 5'-3' exoribonuclease 1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
bdr
Bactrocera dorsalis (oriental fruit fly)
Pathway
bdr03008
Ribosome biogenesis in eukaryotes
bdr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bdr00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
105233326
09123 Folding, sorting and degradation
03018 RNA degradation
105233326
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bdr03019
]
105233326
03009 Ribosome biogenesis [BR:
bdr03009
]
105233326
03016 Transfer RNA biogenesis [BR:
bdr03016
]
105233326
03036 Chromosome and associated proteins [BR:
bdr03036
]
105233326
Messenger RNA biogenesis [BR:
bdr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
105233326
mRNA degradation factors
5'-3' decay
5' exonucleases
105233326
Ribosome biogenesis [BR:
bdr03009
]
Eukaryotic type
Pre-60S particles
RNases
105233326
Transfer RNA biogenesis [BR:
bdr03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
105233326
Chromosome and associated proteins [BR:
bdr03036
]
Eukaryotic type
Gene silencing
piRNA pathway
105233326
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
Motif
Other DBs
NCBI-GeneID:
105233326
NCBI-ProteinID:
XP_011213680
UniProt:
A0A6I9W9B4
LinkDB
All DBs
Position
4:67236592..67244404
Genome browser
AA seq
1630 aa
AA seq
DB search
MGVPKFFRYISERYPCLSELAREQSIPDFDNLYLDMNGIIHTCSHPDDSNFHFTITEETM
FKDIFNYIDKLFFLIKPQKLFFMAVDGVAPRAKMNQQRSRRFRSAKDAEILEAKAKSRGE
VRETERFDSNCITPGTEFMVRLQEALRYFIKSKISSDPLWQKCRVILSGHDTPGEGEHKI
MDYIRYLKSQKDYDPNTRHCLYGLDADLIILGQCTHELHFVVLREEVKFGRKTKQASVEE
TRFFLLHLGLLREYLELEFDELKKNYDNFNISNLIDDWVLMGFLVGNDFIPHLPCMHISS
NALPLLYKTYIKVYPTLGGNINVKGKLNLERLEKYFAELSNVEYEIFQENHADLKYFEAK
QTKNGIDEAFDFDVNEITLDNQDADLADLIESSRQFLEDDNEDLSDEEQHLADEFETYKR
NYYMNKLNQNDMNCESKREQAICYITALQWILDYYYRGVQSWDWYYPHHYAPFISDLKNF
KDYKIKFNLGEPFLPFEQLLAVLPAASKDLLPAAYRELMTSTTSELLEFYPKDFETDLNG
KKHEWEAVVLIPFIDEKRLLDAMKACEKNLTPAEVKRNRHGPMQQYDYHPESQGSAPGIF
SLRPLYSVFCTEQQIWSKEIAVPSDKTVCVELPNAARTVFFPGFPTMKHLKYDFELKFAR
VRVFEQPSRSENLILKPHMRKGLDDIYTVAEKYLNQVVYTGWPHLIKSKVVGISNREKYI
DAEGIKDMEPRLFQIHMKTAQEHLSTRMGIELDDFSVLVHVRVHIGTTCVCGNQGKIIVN
DAWGYSVTAYPAQAVVAEIAVQKSVVTQPKKVENFFPTDSTVFFLGSPYFGSEGTVLNPM
LVYECGRLKVNITVLPEPDFTAARLLQHKLERDYVNSFQVAATVSVQMRCLGRVTGTVLV
VAGARRKELPENVSKVNIGLQLKFPKQQEERAGYCRRINNQWYYSSKAISLIQEYYLKYP
MVFDYLSRSSERNEFCFEEDLFPEEVGERKLDEIITWLKSQDHVKADRRLCGSQTMEKEA
VESVLDAIEQLKTLPVKTVKLQVKPHLLLKPDVTLANIYKPKRPVKLFDRVVVVKTTYMV
PLGAKGTVIGVYPITDPNPVRMECVKSVDIFYEILFDKHLPSGNDVYGIAEERVYRVSES
ALLLIFAQDNKQNDMQESKPNQLPNEERSVQSNHNGFSQTQKQQQQPQTPQQSSEPSEPS
GSNEPSSSNNAKITILQQSRQAEPPKALLPAQSTYKRAGAGGALDTDDFWMPAAETKVKH
TVAKELALANAEQRNGKIQSKVIDSTTKGEHTTPNEMAKTENPQEQLMQKLLLGNRTAVP
KTANVSDASDCQAGTQALKSLLGVGLNPATVQPQTNQKGKSDGPQPLKKQLPQPPAGWRS
DAQQAQQLPPNRRPHYQAPNRPLQPIFPLQQQQQQPPQLAPQPNTLLPYGGAANRLPSQP
MPPMPPPPPAHYNNMGGYYPPKMLHPPAYPMQQHTPHPPLPFQMIHPINEKPHPNATVEH
VGHARSAFIPLQVLRGNAHQQAQAHVPASPQQPTPHQERQRTVSAVKGAPINTKKTNVQA
LQQNLNKLQIMSEASNTQNLPQNAQQLPEQASTKATSDAKNDGCSAKAEQPRRKRSPRVP
KIGARFDNAQ
NT seq
4893 nt
NT seq
+upstream
nt +downstream
nt
atgggagtaccaaaatttttccgctacatcagcgaacgttacccttgcctaagtgagttg
gcaagagaacaaagtattccggattttgacaatctttatctagacatgaacggaattata
catacatgttcacatcctgatgacagcaactttcactttactatcacagaggaaaccatg
tttaaagacatttttaattacatcgataagttattctttctaattaagccacaaaagcta
ttttttatggccgttgacggcgtagctcctcgcgctaaaatgaatcaacagcgcagtcgg
cgttttcgctctgccaaagatgctgagatattagaagcaaaagccaaaagtcgcggtgaa
gtgcgtgaaactgaacgttttgatagcaactgcatcacgcctggcaccgaatttatggtg
cgtctgcaagaggcactgcgctatttcattaagagtaaaatcagttcagatccattatgg
caaaagtgccgtgttatactgagtggacatgatacaccaggcgagggggaacataaaata
atggattacattcgatacctcaaatcacaaaaagactatgatccgaatacgcgccactgt
ctctacggattggatgcagatttaattattttgggacaatgtacgcatgaactccatttc
gtagtattgcgcgaagaagtaaaattcggacgtaagacaaagcaagcttctgttgaggaa
acacgttttttcctactacatttaggattgttgcgtgaatatctagaactggaatttgac
gaattgaagaaaaattatgacaattttaacatatcaaatcttatcgatgactgggtactg
atggggttccttgtgggcaatgattttataccgcatttgccgtgtatgcatatctcctca
aatgcgttgcctttattatataagacctacatcaaagtatacccaacgcttggaggtaac
attaatgtgaagggtaaattaaatttggagcgtttggaaaaatatttcgccgaactttcg
aatgtcgaatacgaaatatttcaggaaaatcacgcagatttgaagtatttcgaagccaaa
caaaccaaaaatggcatagatgaagcattcgattttgatgtaaatgagataactttagat
aatcaagacgccgatctcgctgatctaattgagagcagcagacagttcttagaagatgac
aatgaagacttgtccgatgaagaacaacacttggcagatgagtttgagacttataaacgc
aattattatatgaataaattgaatcaaaacgatatgaattgtgaatcaaagcgtgagcaa
gctatttgttacataaccgcactacaatggattttggactactattacagaggtgtgcaa
tcatgggattggtattatccccatcattacgcaccatttatcagtgacctgaaaaacttc
aaagactataaaattaagtttaatttgggtgaaccgttcctgccattcgaacagctctta
gctgtgctaccagccgctagcaaggacttgttgccggcggcataccgtgaactaatgacc
agcaccaccagcgagttgctcgagttttatccaaaagatttcgaaaccgatttaaatggc
aagaaacacgaatgggaagccgtcgtgctaataccattcattgatgaaaaacgtttgctg
gatgcaatgaaagcttgcgaaaagaatctcacaccagccgaagtgaaacgaaatcgtcat
ggtccaatgcaacagtatgattaccatccagaatcgcaaggtagcgcaccaggcatattc
tctttgcgaccgttatatagtgtcttctgcactgaacagcagatttggtcgaaagaaatt
gctgtgccgtccgacaagactgtttgtgtggagctgccaaatgccgcgcgaacagtcttc
ttcccaggctttccgaccatgaagcatctgaaatacgacttcgagttgaagtttgcgcgc
gtgcgcgttttcgagcaaccaagtcgtagcgaaaatctaatactgaaacctcatatgcgc
aaaggattagatgatatttacactgttgctgaaaagtatttgaatcaagtcgtttacact
ggctggccgcatttgataaagtccaaagtagttggcatatccaacagggaaaaatacatt
gatgccgaaggcataaaagacatggaaccgcggctatttcaaatccacatgaagacagca
caggaacacctcagcacacgcatgggcattgaattggatgacttttcggtgttggtgcat
gtgcgcgtacacataggcaccacttgcgtttgtggcaatcaaggcaagatcatcgtcaac
gatgcctggggctattcggtgaccgcctatccggcgcaggctgtagttgctgagattgct
gtgcaaaaaagcgtggtaacgcagcccaaaaaggtagagaacttctttcctaccgacagc
acagtgttcttcttaggcagcccttactttggcagcgaaggcactgtactaaatcccatg
cttgtctacgaatgcggacgtttgaaagtaaatataacggtactcccggagcctgatttc
acggccgcccggctcttgcaacacaaactggagcgtgactacgtgaattccttccaagtc
gccgccacagttagtgtacaaatgcggtgtctgggacgcgtgactggcacggttttagtg
gtggcgggcgcccggcgtaaggaattgccggagaatgtctcaaaagtcaatattggcttg
cagcttaaatttcctaagcagcaagaagagcgcgcaggctattgccgccgcataaacaat
cagtggtactattcatccaaagccatatcgctgatacaagagtattatttaaagtatcct
atggtttttgattatttaagtcgctcctcggagcgcaatgaattctgctttgaagaagat
ctcttccccgaagaagttggtgagcgtaaattagatgagattatcacgtggctaaagagc
caagatcatgttaaggcagatagacgcttatgtggctcacaaacaatggaaaaggaagct
gttgagagcgtgctggacgccatcgaacaattaaagactttacccgtgaagactgtaaag
ctgcaagtgaagccccacctgctgctcaaacctgacgtaacgctggccaatatttacaag
cccaagcgacctgtgaaattattcgatcgtgtggtggtggtaaagaccacctacatggtg
ccgctaggtgcgaagggtacggttatcggcgtgtatccgataaccgatccgaacccagtg
cgcatggaatgtgtgaagtccgtcgacatattctatgagatactcttcgataagcatctg
ccgagtggcaacgatgtgtacggtattgccgaggagcgtgtttacagagtttcggagtcg
gcgttgttacttattttcgcacaagataataaacaaaacgacatgcaggaatcgaagccg
aatcaattaccaaacgaagagaggagtgtgcagagcaatcacaatggcttttcacaaaca
cagaaacaacaacagcagccgcagacgccacaacagtcgagcgaacctagtgaaccgagc
ggctccaacgagcccagcagcagtaataatgcgaaaattaccatactgcaacaaagcaga
caagcagagccgccgaaggctttattgcccgcgcaaagcacatataaacgtgccggtgct
ggcggcgcactcgacaccgatgacttctggatgccagcggcagaaaccaaagtgaaacac
acggtggcgaaagaactggcgctggccaatgcggagcaaaggaatggcaaaatccaaagc
aaagtaattgattcgacgaccaaaggcgaacatacaacgccgaatgaaatggcaaaaacg
gagaatccacaagagcagctaatgcaaaaattactactcggcaaccgaacagccgtcccg
aaaacggcaaatgtaagcgatgcgagcgattgccaagcgggcacgcaagccttgaaaagc
ttgctcggtgtcggtttgaacccagccactgtgcagccgcaaacaaatcaaaagggcaag
agcgacggcccacaaccgttgaagaaacagttacctcaaccgccggctggttggcgcagc
gatgcgcagcaagcgcaacaactgccaccgaataggcggccacattatcaagcgcccaac
cgtccgctacagcccattttcccactacagcaacagcaacaacaaccaccacaattggcg
ccccagccgaatacgttgctaccctacggcggcgccgccaataggctgcccagccagcca
atgccgccgatgccaccgccgccgccagcacattacaacaacatgggcggctactatcca
ccaaagatgcttcatccgccggcatacccaatgcagcagcacacgccacacccgccgctg
ccctttcaaatgatccatccgataaatgaaaagccccaccctaacgccacagttgaacat
gtcggtcatgcacgaagcgctttcataccgctgcaggtgctgcgtggcaatgcccatcag
caggcacaagcgcacgtcccggcatcaccgcaacagcctacgccgcaccaggagcgccag
cgcactgtgagcgccgtcaaaggcgcacccataaatacaaagaagaccaacgtgcaggcg
ctgcagcaaaacttgaacaaattgcaaatcatgtcggaagcatcgaatacgcagaatctc
ccacaaaatgcgcaacaactgccggagcaagccagcacaaaagcaacaagtgacgccaag
aatgatggctgcagcgctaaagcagagcagccgcgaagaaaacgttcgccgcgcgtcccc
aagatcggtgcacgttttgacaacgctcagtga
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integrated database retrieval system
