Pseudobdellovibrio exovorus: A11Q_1917
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Entry
A11Q_1917 CDS
T02492
Name
(GenBank) DNA-directed RNA polymerase beta chain
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
bex
Pseudobdellovibrio exovorus
Pathway
bex03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bex00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
A11Q_1917
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bex03021
]
A11Q_1917
03400 DNA repair and recombination proteins [BR:
bex03400
]
A11Q_1917
Enzymes [BR:
bex01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
A11Q_1917
Transcription machinery [BR:
bex03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
A11Q_1917
DNA repair and recombination proteins [BR:
bex03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
A11Q_1917
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RnfC_N
Peptidase_M23
Cas_Csy2
Motif
Other DBs
NCBI-ProteinID:
AGH96133
UniProt:
M4VA90
LinkDB
All DBs
Position
complement(1936935..1941110)
Genome browser
AA seq
1391 aa
AA seq
DB search
MNQTPITASNLRIRKSFAKNKQVIEIPNLIELQKRSYEAFLQRETDPDRRGDEGLNGVFK
SVFPISDFNNTSSLEFVSYTLEPAKYDVDECRQRGMTFAAPIKVTLRLIVFDIDEETEAR
SIRDVKEQEVYLGEIPLMTANGSFIINGTERVVVSQLHRSPGVFFDHDGGKNNASGKLIY
SARVIPYRGSWLDVEFDQKDVIHVRIDRRRKFPVTILLKALGYNVEQLLEYFYDLDEIVV
KGKSLYRKLDIERMSGQRAIADIVDPKSGEVLVKAGRRITRAIVKKVKDLNLTEVEVQPQ
DLEGKVLAKPLIDESTGEIIADANNELTVSIIKKAVSAGIENFYLIFFDGLTVGPFLRNT
LLVDKVNNKEEALIEIYKRLRPGEPPVMEAAEAYFNRLFFDAEAYDLSEVGRIKINHKFG
ISMEECPPSFRVLTHKDILSTVRHLIDLKNGRGVVDDIDHLGNRRVRSVGELLENQYRVG
LVRMERAIKERMSLQDVETMMPHDLVNAKPVNAVVKEFFGSSQLSQFMDQTNPLSEITHK
RRLSALGPGGLTRDRAGFEVRDVHPTHYGRICPIETPEGPNIGLIASLSTYARINSYGFI
ETPYRKVEGGRVSSEIHYMSALEEGGHFIAQAPTDEKYSKELGQGNLTVRRDGEYELVDR
EKVSLMDVSPSQLVSIAASLIPFLEHDDANRALMGSNMQRQAVPLLKSRAPLVGTGVERL
VARDSGTSVVSSNDGIVEEVDASRIVVRRLAKGGELGANVDIYNLTKYQRTNQNTCFNQK
PIVKKGDKVFKGDIIADGPSTELGELALGQNILVAFTPWMGYNFEDSILISERLLKEDTY
TSVHIEEFECIARDTKLGKEEITRDIANVGEEALKDLDTSGIIRIGAEVKPGYILVGKVT
PKGETQLSPEEKLLRAIFGEKAGDVRDTSLRVPSGVYGTVIDAQVYSREGADRDERLASI
IEEKRIKLEKDLVIEQNVIRNNAIEKLREIVIGKKTTGILLNEDGSVKLLNKGQDITSAD
LETIPFELLSYLPLEQDLEFQVSKIIDGARNQLDAVKLVFNEKIDRLKKGDELPPGVIKM
VKVYVAIKRKLQVGDKFAGRHGNKGVVSKVLPQEDMPYLADGTPVDMVLNPLGVPSRMNI
GQILEVHLGWAAHNLGKQIQEQLEKFDADSMRAKMKEIYQDTDISAKVDKADETSLKKMA
VAIKDGIHVGTPVFDGAHESDMRDLLKKAELATTQSILIDGRTGEPFSNAVTVGIMYMLK
LHHLVEEKIHARSIGPYSLVSQQPLGGKAQFGGQRLGEMEVWAIEAYGAAYSLQEFLTVK
SDDVAGRTRMYESIVRGENILEPGLPESFNVLIKELQSLAMNVELVESDILTDDEPLTDD
PESNANEPVQH
NT seq
4176 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaaactccgattactgcatctaatctgagaattagaaaatcgttcgcaaaaaat
aaacaagttattgaaattccaaatctgatcgaattgcaaaaaagatcatacgaagctttc
ttgcaaagagaaactgatccagatcgtcgtggtgatgaaggtctgaatggtgtttttaaa
tcagtatttccaatctctgatttcaataacacttcgtctttagagttcgtaagttacact
cttgagccagctaagtacgacgtagacgagtgccgtcaacgtggtatgactttcgctgct
ccgatcaaagtaactctacgtcttatcgtttttgatattgatgaagaaacagaagctcgc
agcatccgcgatgtaaaagaacaagaagtttatctgggtgaaatcccattgatgacagct
aacggttctttcatcatcaacggaactgagcgtgttgttgtttctcaattacacagatct
ccgggtgttttctttgaccacgatggtggtaagaacaacgcttctggtaaattaatctac
tctgcacgcgtgattccataccgtggttcttggttagacgttgagttcgaccaaaaagac
gttatccacgttcgtatcgatcgtcgtcgtaaattccctgtaacaatcttgttaaaagca
ttgggttacaatgttgagcaattacttgagtacttctacgatctagatgaaatcgtagtt
aaaggtaaatctttatatcgtaagctagatatcgaaagaatgtctggtcaaagagcgatt
gctgatatcgtggatccaaaatcaggcgaggttctggttaaagcgggtcgtcgtatcaca
cgtgctatcgttaaaaaagtaaaagacttgaacttaactgaagttgaagttcaacctcaa
gatttagaaggcaaagtattagctaagcctttaatcgatgagtcaacaggtgaaatcatt
gcagatgcaaacaatgaattaactgtttcaattattaaaaaagcagtttctgctggtatt
gaaaacttctacttaattttcttcgatggtctaactgttggtccattcttaagaaatact
ttgttagttgataaagttaacaacaaagaagaagctttaatagaaatctacaaacgtcta
cgtcctggtgagcctccagtaatggaagcggctgaagcttatttcaatcgtctattcttc
gatgcagaagcgtatgacttatcagaagttggtcgtattaaaatcaatcacaaattcggt
atctcgatggaagaatgtcctccgagcttccgcgttttaactcataaagatatcttgtcg
actgtaagacacttgatcgatctgaaaaatggtcgtggtgttgttgatgatatcgatcac
ttaggtaatcgccgtgttcgttctgtgggtgagcttttagaaaaccaataccgcgtaggt
ttggttcgtatggaaagagccatcaaagagcgtatgtcattgcaagacgtagaaacgatg
atgccacatgacttagttaacgctaagccagtgaatgccgtagtgaaagagttcttcggt
tcttctcaattatctcagttcatggatcaaacaaatccattatctgagatcactcacaaa
cgtcgtctatctgcacttggacccggaggtctgactcgtgaccgcgctggtttcgaagta
cgtgacgtacatccgacgcattacggacgtatttgcccgatcgagactccagagggacca
aacatcggtcttatcgcgtctttgtcgacttatgctcgtatcaacagctatggtttcatc
gagactccgtaccgcaaagttgaaggtggacgtgtttcatctgaaattcactacatgtca
gctcttgaagagggtggacactttatcgctcaagctccgactgatgaaaaatacagtaag
gaattgggacaaggtaacttaactgtacgccgtgatggtgagtacgagttagttgaccgt
gaaaaagtatctttgatggacgtttctccgtcacagttggtttctatcgcagcttctttg
atcccattcttagagcatgatgatgccaaccgtgccttgatgggatcgaacatgcaacgt
caagcggtgcctctgttgaaatctcgcgctccattggttggtactggcgttgagcgctta
gtggcgcgtgactctggaacttcagttgtttcttctaacgatggtatcgtggaagaagtg
gatgcttctcgtatcgtggttcgtcgtcttgctaaaggcggtgaattgggagcgaacgtt
gatatctacaacttaacgaagtaccaacgtacaaaccaaaatacatgtttcaatcaaaaa
ccaatcgttaaaaaaggtgataaagtcttcaaaggcgacatcatcgcggatggtccatct
acagagttaggtgaattggcacttggacaaaacatccttgtcgcgttcactccttggatg
ggttacaacttcgaggattctatcttgatttcagaaagacttctgaaagaagacacgtac
acttcagttcacattgaagagttcgaatgtatcgctcgtgacactaaattaggtaaagaa
gagatcacacgtgatatcgctaacgttggtgaagaagcgttaaaagatcttgatacttca
ggtatcatccgtatcggtgcagaagttaaaccgggttacatcttagttggtaaagtaact
cctaaaggtgaaactcagttatcacctgaggagaaattattacgcgcgatcttcggtgaa
aaagccggtgacgttcgtgatacatctttacgtgttccatctggtgtttacggaactgtt
atcgatgcgcaagtttactctcgtgaaggtgctgaccgcgacgagcgtttagcttctatc
atcgaagaaaaacgtatcaaattagaaaaagatcttgttatcgaacaaaacgttatccgc
aataacgctatcgaaaaattgcgtgaaatcgtgatcggtaagaaaacaactggtattctt
ctaaatgaagatggaagtgttaagcttttaaataaaggccaagacatcacatctgcagac
ttagaaacaattccatttgagcttttgagctacttacctcttgagcaagatttagaattc
caagttagcaaaatcatcgatggcgctcgtaaccaattagatgctgttaagttagtattt
aatgaaaaaatcgaccgcttgaaaaaaggtgacgagttacctccaggcgtaatcaaaatg
gttaaagtttacgttgctattaaacgtaaattgcaagtcggtgataaattcgccggacgt
catggtaataagggtgttgtttcaaaagtattacctcaagaagacatgccttacttagct
gacggaactccggttgacatggttctgaacccgctgggcgtaccttcgcgtatgaatatc
ggtcagatccttgaagttcacttgggttgggccgctcataacttgggtaaacaaatccaa
gaacaattagaaaaattcgatgcagactctatgagagctaaaatgaaagagatctaccaa
gatactgacatttcagcaaaagtagataaagcagacgagacttcattgaagaagatggca
gttgcaatcaaagatggtatccacgttggaacaccggtatttgatggtgcgcatgaatct
gatatgcgtgatctgttgaagaaagctgagttagcgacaactcaatctatcttgattgat
ggtcgtacgggcgagccgttcagcaacgcggttacagtcggtatcatgtacatgttgaaa
cttcatcacttggttgaagagaagatccatgctcgttcaattggaccttactctctagtt
tctcagcagccacttggcggtaaagcgcaattcggtggtcagcgtttaggggaaatggaa
gtttgggcgatcgaagcttacggtgctgcttactcactacaagagttcctgactgttaag
tcggatgacgtagcgggtagaactcgtatgtacgaaagtatcgtacgcggcgagaacatc
cttgagccgggattgccagagtcatttaacgtattaatcaaagaacttcagtcgttagcg
atgaacgtggaattggttgagtcagacatcttaacagatgacgagcctttaactgatgat
ccagagtcaaacgcaaatgaaccggttcaacactaa
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