Branchiostoma floridae (Florida lancelet): 118404170
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Entry
118404170 CDS
T01074
Name
(RefSeq) uncharacterized protein LOC118404170
KO
K06238
collagen type VI alpha
Organism
bfo
Branchiostoma floridae (Florida lancelet)
Pathway
bfo04512
ECM-receptor interaction
bfo04518
Integrin signaling
bfo04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
bfo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
118404170
04518 Integrin signaling
118404170
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
118404170
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
bfo04147
]
118404170
00536 Glycosaminoglycan binding proteins [BR:
bfo00536
]
118404170
Exosome [BR:
bfo04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
118404170
Glycosaminoglycan binding proteins [BR:
bfo00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
118404170
Hyaluronan
Extracellular matrix or blood plasma proteins
118404170
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
VWA_2
SEA
VWA_CoxE
Motif
Other DBs
NCBI-GeneID:
118404170
NCBI-ProteinID:
XP_035659085
UniProt:
A0A9J7HIV4
LinkDB
All DBs
Position
2:13035966..13060661
Genome browser
AA seq
2671 aa
AA seq
DB search
MRGGTLTGRAIRYVSRYGFARSDGARPGVAKVLIVVTDGISYDGVATPAYKARQKGILVY
AIGVSGYDLTQLEQIASNNRTLAVVDNFNLLDSLRNTLLTGVCDAVPPVFVCVTLTTQFS
IQLRNPDSSEFSSITSALIAEVSQLFTSIVGFQGATVVGYQPAPDNQVKVSIAVFVAEFA
ATTMKQTFVVAVSTGNLGSISVNASSAVIVQQETNSTIVSLVVQRNCSADLLNPESAMYI
ALVAQIESAVLSILQNIPGVVSIEVSGISCSGLYIRVTITVVVVSTSSSSLVTTVSTAVS
SGNVGGLTVDPTSFISGDEALVCRTPLDIILLLDGSGSVGAYNFEKVKQFSQKLVETFDI
GPSGTQIGVIQYSTRVRQEFSMNSFQSKEALSNAIDDIAYMRGGTLTGRAIRYVSRYGFA
RSDGARPGVAKVLIVVTDGISYDGVATPAYKARQKGILVYAIGVSGYDLTQLEQIASNNR
TLAVVDNFNLLDSLRNTLLTGVCDAVPPVFVCVTLTTQFSIQLRNPDSSEFSSITSALIA
EVSQLFTSIVGFQGATVVGYQPAPDNQVKVSIAVFVAEFAATTMKQTFVVAVSTGNLGSI
SVNASSAVIVQQETNSTIVSLVVQRNCSADLLNPESAMYIALVAQIESAVLSILQNIPGV
VSIEVSGISCSGLYIRVTITVVVVSTSSSSLVTTVSTAVSSGNVGGLTVDPTSFISGDEA
LVCRTPLDIILLLDGSGSVGAYNFEKVKQFSQKLVETFDIGPSGTQIGVIQYSTRVRQEF
SMNSFQSKEALSNAIDDIAYMRGGTRTGRAIRYVSRYGFARSDGARPGVAKVLIVVTDGI
SYDGVATPAYKARQKGILVYAIGVSGYDLTQLEQIASNNRTLAVVDNFNLLDSLRNTLLT
GVCDAVPPVFVCVTLTTQFSIQLRNPDSSEFSSITSALIAEVSQLFTSIVGFQGATVVGY
QPAPDNQVKVSIAVFVAEFAATTMKQTFVVAVSTGNLGSISVNASSAVIVQQETNSTIVS
LVVQRNCSADLLNPESAMYIALVAQIESAVLSILQNIPGVVSIEVSGISCSGLYIRVTIT
VVVVSTSSSSLVTTVSTAVSSGNVGGLTVDPTSFISGDEALVCRTPLDIILLLDGSGSVG
AYNFEKVKQFSQKLVETFDIGPSATQIGVIQYSTRVRQEFSMNSFQSKEALSNAIDDIPY
MRGGTLTGRAIRYVSRYGFARSDGARPGVAKVLIVVTDGISYDGVATPAYKARQKGILVY
AIGVSGYDLTQLEQIASNNRTLAVVDNFNLLDSLRNTLLTGVCDAVPPVFVCVTLTTQFS
IQLRNPDSSEFSSITSALIAEVSQLFTSIVGFQGATVVGYQPAPDNQVKVSIAVFVAEFA
ATTMKQTFVVAVSTGNLGSISVNASSAVIVQQETNSTIVSLVVQRNCSADLLNPESAMYI
ALVAQIESAVLSILQNIPGVVSIEVSGISCSGLYIRVTITVVVVSTSSSSLVTTVSTAVS
SGNVGGLTVDPTSFISGDEALVCRTPLDIILLLDGSGSVGAYNFEKVKQFSQKLVETFDI
GPSATQIGVIQYSTRVRQEFSMNSFQSKEALSNAIDDIAYMRGGTLTGRAIRYVSRYGFA
RSDGARPGVAKVLIVVTDGISYDGVATPAYKARQKGILVYAIGVSGYDLTQLEQIASNNR
TLAVVDNFNLLDSLRNTLLTGVCDAVPPVFVCVTLTTQFSIQLRNPDSSEFSSITSALIA
EVSQLFTSIVGFQGATVVGYQPAPDNQVKVSIAVFVAEFAATTMKQTFVVAVSTGNLGSI
SVNASSAVIVQQETNSTIVSLVVQRNCSADLLNPESAMYIALVAQIESAVLSILQNIPGV
VSIEVSGISCSGLYIRVTITVVVVSTSSSSLVTTVSTAVSSGNVGGLTVDPTSFISGDEA
LVCRTPLDIILLLDGSGSVGAYNFEKVKQFSQKLVETFDIGPSGTQIGVIQYSTRVRQEF
SMNSFQSKEALSNAIDDIAYMRGGTLTGRAIRYVSRYGFARSDGARPGVAKVLIVVTDGI
SYDGVATPAYKARQKGILVYAIGVSGYDLTQLEQIASNNRTLAVVDNFNLLDSLRNTLLT
GVCDAVPPVFVCVTLTTQFSIQLRNPDSSEFSSITSALIAEVSQLFTSIVGFQGATVVGY
QPAPDNQVKVSIAVFVAEFAATTIKQTFVVAVSTGNLGSISVNASSAVIVQQETNSTIVS
LVVQRNCSADLLNPESAMYIALVAQIESAVLSILQNIPGVVSIEVSGISCSGLYIRVTIT
VVVVSTSSSSLVTTVSTAVSSGNVGGLTVDPTSFISGDEALVCRTPLDIILLLDGSGSVG
AYNFEKVKQFSQKLVETFDIGPSGTQIGVIQYSTRVRQEFSMNSFQSKEALSNAIDDIAY
MRGGTRTGRAIRYVSRYGFARSDGARPGVAKVLIVVTDGISYDGVATPAYKARQKGILVY
AIGVSGYDLTQLEQIASNNRTLAVVDNFNLLDSLRNTLLTGVCDAVPPVFVCVTLTTQFS
IQLRNPDSSEFSSITSALIAEVSQLFTSIVGFQGATVVGYQPAPDNQVKVSIAVFVAEFA
ATTMKQTFVVAVSTGNLGSISVNASSAVIVRQETNSTIVSLVVQRNCSADLLNPESAMYI
ALVAQIESAVLSILQNIPGVVSIEVSGISCS
NT seq
8016 nt
NT seq
+upstream
nt +downstream
nt
atgcgaggcggtacactgactggaagggctatcaggtatgtgagcaggtacggctttgca
agatcggatggagctcgtccgggagtagcaaaagtgcttattgtcgtcacagatggcatt
tcgtatgacggagtggcaacaccagcatataaagcaagacagaagggaatccttgtctac
gctattggtgtgtcaggctacgacctgacgcagctcgagcagatcgccagcaataacagg
accttggctgtggtggacaacttcaacctgctagatagtctgaggaacacacttttgact
ggagtttgtgatgccgtgccgccagtctttgtgtgtgtaacattgactacccagttctcc
atacaactgagaaaccctgactcgagcgaattctccagcatcaccagtgctctcattgca
gaggtatcccaactatttacctccatcgtgggattccaaggagcaactgtggttggttac
caacctgcccctgacaatcaagtaaaagtatcaattgctgtctttgttgctgagtttgct
gctactaccatgaagcaaacatttgttgttgctgtaagcactggcaacttgggatctata
tcggtgaatgcaagctccgccgtcattgttcaacaagaaacgaattcaaccatagtaagt
ctggtagttcaaaggaattgcagtgcagatctactcaacccggagtcagcgatgtacatt
gccctggtcgctcaaattgaatctgcggtgctgtctattcttcaaaacatcccaggggtc
gtctccattgaagtgagcggcatcagttgctctgggctttacatcagagtaaccattact
gtagtggtggtgtccacgtcctctagttcactagtgacgacagtctctacagcggtatca
tcagggaatgtgggaggcctgactgtcgatccgacttcattcatttcaggagacgaagct
ttagtgtgtcgaacacctctggacatcattttgctgttggatggatcaggaagcgtaggg
gcctacaactttgagaaagtgaaacagttttctcaaaagctcgtcgagacctttgacatc
ggtccatctggaacgcaaataggggttatccaatacagcacgcgtgtgagacaggaattc
tccatgaacagcttccaaagcaaagaagctttgtccaatgcaatcgacgatattgcatac
atgcgaggcggtacactgactggaagggctatcaggtatgtgagcaggtacggctttgca
agatcggatggagctcgtccgggagtagcaaaagtgcttattgtcgtcacagatggcatt
tcgtatgacggagtggcaacaccagcatataaagcaagacagaagggaatccttgtctac
gctattggtgtgtcaggctacgacctgacgcagctcgagcagatcgccagcaataacagg
accttggctgtggtggacaacttcaacctgctggatagtctgaggaacacacttttgact
ggagtttgtgatgccgtgccaccagtctttgtgtgtgtaacattgactacccagttctcc
atacaactgagaaaccctgactcgagcgaattctccagcatcacgagtgctctcattgca
gaggtatcccaactatttacctccatcgtgggattccaaggagcaactgtggttggttac
caacctgcccctgacaatcaagtaaaagtatcaattgctgtctttgttgctgagtttgct
gctactaccatgaagcaaacatttgttgttgctgtaagcactggcaacttgggatctata
tcggtgaatgcaagctccgccgtcattgttcaacaagaaacgaattcaaccatagtaagt
ctggtagtgcaaaggaattgcagtgcagatctactcaacccggagtcagcgatgtacatt
gccctggtcgctcaaattgaatctgcggtgctgtctattcttcaaaacatcccaggggtc
gtctccattgaagtgagcggcatcagttgctctgggctttacatcagagtaaccattact
gtagtggtggtgtccacgtcctctagttcactagtgacgacagtctctacagcggtatca
tcagggaatgtgggaggcctgactgtcgatccgacttcattcatttcaggagacgaagct
ttagtgtgtcgaacacctctggacatcattttgctgttggatggatcaggaagcgtaggg
gcctacaactttgagaaagtgaaacagttttctcaaaagctcgtcgagacctttgacatc
ggtccatctggaacgcaaataggggttatccaatacagcacgcgtgtgagacaggaattc
tccatgaacagcttccaaagcaaagaagctttgtccaatgcaatcgacgatattgcatac
atgcgaggcggtacacggactggaagggctatcaggtatgtgagcaggtacggctttgca
agatcggatggagctcgtccgggagtagcaaaagtgcttattgtcgtcacagatggcatt
tcgtatgacggagtggcaacaccagcatataaagcaagacagaagggaatccttgtctac
gctattggtgtgtcaggctacgacctgacgcagctcgagcagatcgccagcaataacagg
accttggctgtggtggacaacttcaacctgctggatagtctgaggaacacacttttgact
ggagtttgtgatgccgtgccaccagtctttgtgtgtgtaacattgactacccagttctcc
atacaactgagaaaccctgactcgagcgaattctccagcatcaccagtgctctcattgca
gaggtatcccaactatttacctccatcgtgggattccaaggagcaactgtggttggttac
caacctgcccctgacaatcaagtaaaagtatcaattgctgtctttgttgctgagtttgct
gctactaccatgaagcaaacatttgttgttgctgtaagcactggcaacttgggatctata
tcggtgaatgcaagctccgccgtcattgttcaacaagaaacgaattcaaccatagtaagt
ctggtagttcaaaggaattgcagtgcagatctactcaacccggagtcagcgatgtacatt
gccctggtcgctcaaattgaatctgcggtgctgtctattcttcaaaacatcccaggggtc
gtctccattgaagtgagcggcatcagttgctctgggctttacatcagagtaaccattact
gtagtggtggtgtccacgtcctctagttcactagtgacgacagtctctacagctgtatca
tcagggaatgtgggaggcctgactgtcgatccgacttcattcatttcaggagacgaagct
ttagtgtgtcgaacacctctggacatcattttgctgttggatggatcaggaagcgtaggg
gcctacaactttgagaaagtgaaacagttttctcaaaagctcgtcgagacctttgacatc
ggtccatctgcaacgcaaataggggttatccaatacagcacgcgtgtgagacaggaattc
tccatgaacagcttccaaagcaaagaagctttgtccaatgcaatcgacgatattccatac
atgcgaggcggtacactgactggaagggctatcaggtatgtgagcaggtacggctttgca
agatcggatggagctcgtccgggagtagcaaaagtgcttattgtcgtcacagatggcatt
tcgtatgacggagtggcaacaccagcatataaagcaagacagaagggaatccttgtctac
gctattggtgtgtcaggctacgacctgacgcagctcgagcagatcgccagcaataacagg
accttggctgtggtggacaacttcaacctgctggatagtctgaggaacacacttttgact
ggagtttgtgatgccgtgccaccagtctttgtgtgtgtaacattgactacccagttctcc
atacaactgagaaaccctgactcgagcgaattctccagcatcaccagtgctctcattgca
gaggtatcccaactatttacctccatcgtgggattccaaggagcaactgtggttggttac
caacctgcccctgacaatcaagtaaaagtatcaattgctgtctttgttgctgagtttgct
gctactaccatgaagcaaacatttgttgttgctgtaagcactggcaacttgggatctata
tcggtgaatgcaagctccgccgtcattgttcaacaagaaacgaattcaaccatagtaagt
ctggtagttcaaaggaattgcagtgcagatctactcaacccggagtcagcgatgtacatt
gccctggtcgctcaaattgaatctgcggtgctgtctattcttcaaaacatcccaggggtc
gtctccattgaagtgagcggcatcagttgctctgggctttacatcagagtaaccattact
gtagtggtggtgtccacgtcctctagttcactagtgacgacagtctctacagctgtgtca
tcagggaatgtgggaggcctgactgtcgatccaacttcattcatttcaggagacgaagct
ttagtgtgtcgaacacctctggacatcattttgctgttggatggatcaggaagcgtaggg
gcctacaactttgagaaagtgaaacagttttctcaaaagctcgtcgagacctttgacatc
ggtccatctgcaacgcaaataggggttatccaatacagcacgcgtgtgagacaggaattc
tccatgaacagcttccaaagcaaagaagctttgtccaatgcaatcgacgatattgcatac
atgcgaggcggtacactgactggaagggctatcaggtatgtgagcaggtacggctttgca
agatcggatggagctcgtccgggagtagcaaaagtgcttattgtcgtcacagatggcatt
tcgtatgacggagtggcaacaccagcatataaagcaagacagaagggaatccttgtctac
gctattggtgtgtcaggctacgacctgacgcagctcgagcagatcgccagcaataacagg
accttggctgtggtggacaacttcaacctgctggatagtctgaggaacacacttttgact
ggagtttgtgatgccgtgccaccagtctttgtgtgtgtaacattgactacccagttctcc
atacaactgagaaaccctgactcgagcgaattctccagcatcaccagtgctctcattgca
gaggtatcccaactatttacctccatcgtgggattccaaggagcaactgtggttggttac
caacctgcccctgacaatcaagtaaaagtatcaattgctgtctttgttgctgagtttgct
gctactaccatgaagcaaacatttgttgttgctgtaagcactggcaacttgggatctata
tcggtgaatgcaagctccgccgtcattgttcaacaagaaacgaattcaaccatagtaagt
ctggtagttcaaaggaattgcagtgcagatctactcaacccggagtcagcgatgtacatt
gccctggtcgctcaaattgaatctgcggtgctgtctattcttcaaaacatcccaggggtc
gtctccattgaagtgagcggcatcagttgctctgggctttacatcagagtaaccattact
gtagtggtggtgtccacgtcctctagttcactagtgacgacagtctctacagcggtatca
tcagggaatgtgggaggcctgactgtcgatccgacttcattcatttcaggagacgaagct
ttagtgtgtcgaacacctctggacatcattttgctgttggatggatcaggaagcgtaggg
gcctacaactttgagaaagtgaaacagttttctcaaaagctcgtcgagacctttgacatc
ggtccatctggaacgcaaataggggttatccaatacagcacgcgtgtgagacaggaattc
tccatgaacagcttccaaagcaaagaagctttgtccaatgcaatcgacgatattgcatac
atgcgaggcggtacactgactggaagggctatcaggtatgtgagcaggtacggctttgca
agatcggatggagctcgtccgggagtagcaaaagtgcttattgtcgtcacagatggcatt
tcgtatgacggagtggcaacaccagcatataaagcaagacagaagggaatccttgtctac
gctattggtgtgtcaggctacgacctgacgcagctcgagcagatcgccagcaataacagg
accttggctgtggtggacaacttcaacctgctggatagtctgaggaacacacttttgact
ggagtttgtgatgccgtgccaccagtctttgtgtgtgtaacattgactacccagttctcc
atacaactgagaaaccctgactcgagcgaattctccagcatcaccagtgctctcattgca
gaggtatcccaactatttacctccatcgtgggattccaaggagcaactgtggttggttac
caacctgcccctgacaatcaagtaaaagtatcaattgctgtctttgttgctgagtttgct
gctactaccattaagcaaacatttgttgttgctgtaagcactggcaacttgggatctata
tcggtgaatgcaagctccgccgtcattgttcaacaagaaacgaattcaaccatagtaagt
ctggtagttcaaaggaattgcagtgcagatctactcaacccggagtcagcgatgtacatt
gccctggtcgctcaaattgaatctgcggtgctgtctattcttcaaaacatcccaggggtc
gtctccattgaagtgagcggcatcagttgctctgggctttacatcagagtaaccattact
gtagtggtggtgtccacgtcctctagttcactagtgacgacagtctctacagcggtatca
tcagggaatgtgggaggcctgactgtcgatccgacttcattcatttcaggagacgaagct
ttagtgtgtcgaacacctctggacatcattttgctgttggatggatcaggaagcgtaggg
gcctacaactttgagaaagtgaaacagttttctcaaaagctcgtcgagacctttgacatc
ggtccatctggaacgcaaataggggttatccaatacagcacgcgtgtgagacaggaattc
tccatgaacagcttccaaagcaaagaagctttgtccaatgcaatcgacgatattgcatac
atgcgaggcggtacacggactggaagggctatcaggtatgtgagcaggtacggctttgca
agatcggatggagctcgtccgggagtagcaaaagtgcttattgtcgtcacagatggcatt
tcgtatgacggagtggcaacaccagcatataaagcaagacagaagggaatccttgtctac
gctattggtgtgtcaggctacgacctgacgcagctcgagcagatcgccagcaataacagg
accttggctgtggtggacaacttcaacctgctggatagtctgaggaacacacttttgact
ggagtttgtgatgccgtgccgccagtctttgtgtgtgtaacattgactacccagttctcc
atacaactgagaaaccctgactcgagcgaattctccagcatcaccagtgctctcattgca
gaggtatcccaactatttacctccatcgtgggattccaaggagcaactgtggttggttac
caacctgcccctgacaatcaagtaaaagtatcaattgctgtctttgttgctgagtttgct
gctactaccatgaagcaaacatttgttgttgctgtaagcactggcaacttgggatctata
tcggtgaatgcaagctccgctgtcattgttcgacaagaaacgaattcaaccatagtaagt
ctggtagttcaaaggaattgcagtgcagatctactcaacccggagtcagcgatgtacatt
gccctggtcgctcaaattgaatctgcggtgctatctattcttcaaaacatcccaggggtc
gtctccattgaagtgagcggcatcagttgctcgtaa
DBGET
integrated database retrieval system
