Branchiostoma floridae (Florida lancelet): 118417142
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Entry
118417142 CDS
T01074
Name
(RefSeq) terminal nucleotidyltransferase 4B-like isoform X1
KO
K03514
non-canonical poly(A) RNA polymerase PAPD5/7 [EC:
2.7.7.19
]
Organism
bfo
Branchiostoma floridae (Florida lancelet)
Pathway
bfo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bfo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
118417142
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bfo03019
]
118417142
03016 Transfer RNA biogenesis [BR:
bfo03016
]
118417142
Enzymes [BR:
bfo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
118417142
Messenger RNA biogenesis [BR:
bfo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
118417142
Transfer RNA biogenesis [BR:
bfo03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
118417142
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTPAP-like_central
PAP_assoc
NTP_transf_2
Polbeta
TUTase
PAP-OAS1
Synapsin_C
Motif
Other DBs
NCBI-GeneID:
118417142
NCBI-ProteinID:
XP_035678442
UniProt:
A0A9J7L922
LinkDB
All DBs
Position
6:4984474..5001773
Genome browser
AA seq
769 aa
AA seq
DB search
MDPRIAWIQPEQLGQAHQTWTQIWLTAQGLNQLHLNGNSNSNLDSNSAPVTPPPPPRNDG
GQPQHNSAQDFIPLDSNRAPRTPLPNSAKRKRDNRASTYNCEPEGGTPWKTRHYAEGVIG
LHEEILDFYKYMSPRMEEFAMRNEVVQRITNIIRSIWPRAKVEIFGSFETGLYLPTSDID
LVVFGSWEALPLFRLEKELRHSNIADPDSIKVLDKATVPIVKLTDRKTDVKVDISFNMPN
GVKSAKLIKKFMQDYPTLKYLVLVLKQFLLQRDLNEVFTGGISSYSLILMTVSFLQLHPR
YDATSPSANLGVLLIEFFELYGRNFNYLQTGIRIKDGGAYITKEEMQVNMDNGYRPSMLC
IEDPLNQGNDIGRSSYGAMQVKAAFDYAYITLSRAVSSNKQYYASNNFSILGRIVKVTEE
VVEYRQWIQQNWSQNIQPNPLLTQPTYASVARMPHVHNMQHQIQMQNQANHSNQLQAHAM
TSHNAVGSTDSAGSEAMMVSDGEMSSHSASSSQASSPASSISASASSSPSNSDTDSSSES
SSSSSLSPHGVTGIPDKAGAPSPKPGATPAPVTNSDAQTIPTATTRSATTVGTTTSKETS
FPSSNVELSAAAAVTTSIVPSTTTRSVTPTAVTRTTDPTPAETPASAPTPAPSTVAAPVR
QNTVSTSTANNSSNSSRPNTPNRGPRQQRVNSSSHGGEDMRRQHAGPSRMWHHSHNQGRT
QYKQSSPHQNNKNFRNASNKKRRRPQQQPQQTRDNPSNSNSNSGHGTSR
NT seq
2310 nt
NT seq
+upstream
nt +downstream
nt
atggatccacgaattgcctggattcagccggaacagctaggacaggcgcaccaaacgtgg
acacaaatctggctgacggcgcaaggtctgaaccagctgcacctcaacggtaactccaac
tccaacctggattccaacagcgcgcccgtcaccccgccacctcctcccaggaacgatggg
ggacagccacaacataattccgctcaggattttattccattggactcaaacagggccccc
aggacgcccctaccgaacagtgcaaagaggaaaagggacaaccgagcaagcacatataac
tgtgaaccggaggggggcactccatggaaaacacggcattatgcagaaggagtgatcggg
ttgcatgaagaaatactggacttttacaagtacatgtctcctaggatggaggagtttgct
atgaggaatgaggtggtgcagaggataaccaatatcattagaagtatttggccaagagca
aaggttgagatttttggcagctttgaaaccgggctgtacctccctaccagtgacatagac
ctggtggtgtttggcagctgggaggcactgcccctgtttaggctagagaaagagctccga
catagcaacattgcagaccctgacagtatcaaggtgttggacaaggcaacggtacccatt
gtgaagctgactgacagaaaaacagacgtgaaagtggacattagcttcaacatgcctaac
ggagtcaagagtgccaaacttataaagaaattcatgcaggactacccgacgctgaagtac
cttgtgctggtgctgaaacagttcctgctgcagcgggacctgaacgaggtgttcaccgga
ggcatcagctcctacagcctcatcctcatgactgtcagctttctacagctccaccccagg
tacgacgccacctctcccagtgccaacctcggagttctgctgatcgagtttttcgagttg
tacggacgaaacttcaactaccttcagaccggcatcaggatcaaggatgggggagcctac
ataaccaaagaggagatgcaggtgaacatggataacggttaccggccgtccatgctgtgt
atcgaggacccactgaaccaggggaacgacatcggccgcagctcgtacggcgccatgcag
gtcaaggcagcttttgactacgcctacatcacactgtcccgcgcagtatcgtcgaataag
cagtactatgcgtccaataatttcagcatcctgggcaggatagtgaaggtgacagaggaa
gttgtggagtacaggcagtggatccagcagaactggtcccagaacatccagcccaacccg
ctcctgacccagcccacctacgccagcgtggccaggatgcctcacgtacacaacatgcag
caccagatacagatgcagaaccaggccaaccacagtaaccagctgcaggcgcacgccatg
acatcccacaatgccgtggggtccacggactcggccggttcggaggccatgatggtgtct
gacggggaaatgtcgagccactcggccagctccagtcaggcctcgtctcccgcatcgtcc
atatccgccagcgcgtcgtcatctccatccaacagcgacacagattccagctcagaatca
tcgtcatcatcatcgttatcaccacatggagtcaccggcattcccgacaaggccggagcg
ccgtccccaaaacctggagcgacgcctgccccagtgacaaacagtgacgcccagacgata
ccgaccgctaccacaagaagtgcgaccactgttggcaccaccacttctaaagagacttct
tttccttcttccaatgtcgagttgtccgcggctgccgcggtcacgacgtctatcgttccc
tcgacgacgacaagaagcgtcacgcccaccgccgtaacaagaactactgacccaacccct
gcagaaacccctgcgtccgcccctacaccggcgccctccactgtcgctgcccccgtgaga
cagaacactgtgtccacaagtacggccaacaactccagcaacagcagtagacccaacacc
cccaacagagggccgcggcaacagagggtcaacagttcatcgcacggaggcgaggacatg
agaagacagcacgcgggcccctctaggatgtggcaccactcgcacaatcagggccgcacg
caatacaagcagtcctcgccgcaccagaacaacaagaacttccgcaacgcttccaacaag
aagagaagacgtccccagcaacagccgcagcagacgagagacaaccccagcaatagtaac
agcaacagcggccacggcacctccagatag
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