Branchiostoma floridae (Florida lancelet): 118426164
Help
Entry
118426164 CDS
T01074
Name
(RefSeq) ATP-dependent DNA helicase Q-like SIM
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
bfo
Branchiostoma floridae (Florida lancelet)
Pathway
bfo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bfo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
118426164
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bfo03019
]
118426164
03400 DNA repair and recombination proteins [BR:
bfo03400
]
118426164
Enzymes [BR:
bfo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
118426164
Messenger RNA biogenesis [BR:
bfo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
118426164
DNA repair and recombination proteins [BR:
bfo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
118426164
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
Motif
Other DBs
NCBI-GeneID:
118426164
NCBI-ProteinID:
XP_035691319
UniProt:
A0A9J7M0Y2
LinkDB
All DBs
Position
11:6298050..6300920
Genome browser
AA seq
535 aa
AA seq
DB search
MATANPTPEFQRILQTVSASGRDDKTYLVEQRNDVFACLPTGYGKTEIYTLVPLVMERMR
GKQCIMLVVSPLLSLMQDQVERLQRRGISAAYIGETQKDPEIKRGVVEGKYSLVFASPEA
LLNSKTWRGMLTSSTYREKLVAMTVDEAHCVTTWGKEFRKDYKRLAELRSLVADVPVLAL
TATATEDIRKDILSSLCMEPDTYTVSKPSNRPNIMYHAIAATYDMKKEFHWLLSELKDKG
QSCSKVIIYCRNIKACSQMYKVFMNSLGDDGYNLEQDQTKSYKNRYVAMFHRSTANTNKN
FVLEQFTKTDSIVRITIATIAFGMGINVPDVYAVVHWGAPRNVEGFYQESGRAGRDGQPA
HSLILHHSRTLAKGSCSPSMASYCKLGNDSCRRKYLLDYFALKSTIREELSVEHTCCDSC
GDSSTLPWHTNLASSEVSDEELLRIAAIRQPTSDQLNLLRESLKDFRRDYMEEMGPTMYS
FNVVTGFSLATIDCIVECCATLLTKDDIMTDIGLWDEEVVDMVFNILDETFQDNV
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
atggcgactgctaaccccacgccggagtttcagcgcatcctgcagacagtgtccgcttca
ggaagagacgataaaacatatttggtcgaacagaggaacgacgtgtttgcgtgccttccg
actggctacgggaagaccgagatctacaccctagttccccttgttatggagaggatgcgc
ggtaaacaatgcatcatgttggtggtgtcgccattgttgtccctgatgcaagaccaagtg
gagcgtctacagagaagagggatttcagcggcatacataggcgagacgcagaaagaccca
gagatcaagcgaggcgttgtggaggggaaatacagcctggtcttcgcgtctccagaagca
ctgctgaactctaaaacatggcggggcatgctaaccagctccacttaccgcgagaagctt
gtcgccatgacggtagatgaggcgcattgtgtaacgacttggggtaaagagttcagaaag
gactacaagcgactggctgagctaaggtcattggttgctgatgttcctgtcctcgcgcta
acagccacagccacagaagacatcaggaaggacatcctttcgtccctgtgtatggagcct
gacacctacactgtttccaaaccatcgaacaggccaaacatcatgtaccatgcaatagct
gcaacctacgacatgaaaaaggagttccactggcttctatctgaactgaaagataaagga
cagtcgtgcagcaaggtcatcatatactgtagaaacatcaaggcatgctcccaaatgtat
aaagtatttatgaactcgttgggagatgatggctacaaccttgaacaggaccaaacgaag
tcatataagaataggtatgtagccatgttccacagaagcacagctaacacgaataagaat
tttgtgttagaacagttcacgaagacagatagcattgttcggataacaattgccacaatt
gcatttggaatgggaatcaatgtacctgatgtatatgctgttgtacactggggggctccc
cgaaatgttgaggggttttaccaggagagtggaagagcgggcagggatggtcaacctgct
cattcactcattctgcatcacagcagaactctagcgaaaggttcatgctcacccagcatg
gcctcatactgcaagctaggtaacgattcttgtcgaaggaaatatttgttagactatttc
gcactgaagagtaccattagagaggagctgtctgtagagcacacctgttgtgattcctgt
ggagatagttcaactctaccctggcatacaaacctggcatcttcagaagtctcagatgaa
gagcttttaagaatagcagccattcgccagccaacttcagaccagcttaatctgttaaga
gaatcattaaaggactttagaagggactacatggaggagatgggacctacaatgtacagt
tttaatgtagtcactggattttccctagccacgattgattgcattgttgaatgttgtgcg
acattactgaccaaagatgacatcatgactgatattggcttgtgggatgaagaagtagtg
gatatggttttcaatattttagatgaaacctttcaagacaatgtatag
DBGET
integrated database retrieval system
