Brachyistius frenatus (kelp perch): 138621650
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Entry
138621650 CDS
T10614
Symbol
skic3
Name
(RefSeq) tetratricopeptide repeat protein 37
KO
K12600
superkiller protein 3
Organism
bfre Brachyistius frenatus (kelp perch)
Pathway
bfre03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bfre00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
138621650 (skic3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bfre03019
]
138621650 (skic3)
Messenger RNA biogenesis [BR:
bfre03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
138621650 (skic3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_2
TPR_16
TPR_1
TPR_14
TPR_11
TPR_19
TPR_17
TPR_8
TPR_12
TPR_CcmH_CycH
TPR_9
TPR_7
ANAPC3
ARM_TT21_N
ARM_TT21_C
TPR_MalT
Fis1_TPR_C
TPR_COPA_B
TPR_15
Motif
Other DBs
NCBI-GeneID:
138621650
NCBI-ProteinID:
XP_069555951
LinkDB
All DBs
Position
Unknown
AA seq
1571 aa
AA seq
DB search
MSSKEVKAALKSARESIKNKEFKEALKHCKTVLKLEKNNYNAWVFIGLAASELEQPDQSQ
TAYKKAVDLEPEQLLAWQGLANLYEKTDQWDFKVELPNVYQKLVELYASSDKNKCYEMIQ
KLSDVYQSDKEHLKLAEVWLQLIQLKEEEAVDKKELVQLLQQMTQLLSDCITEEEQDNEI
QQHLVTAFEKAMVLMDPVPGEEHKKISADYVKCLSKLPQEEAKMKVACQSMLSFYPNQSY
PLEVLCSHYLKTGSMNDDAVSCFSRLLDVAPNNGLGHLGLGTKALQEGRYKDAIKDLAQG
LKKINSTAGWYSLAEAQFKMHRYSDSAASCSQGLDVCTSGDKELRGKLLRLKLEAFVRSG
GGKAADEALETFSHIPEAEKDPLLLAFKGRAYLNKGQIDQALKLSSQLVASNPNLAQGLV
LRGLAHLAEGKKQLSEQSFLKAASQSPDSGEYYFLLGQLYWDMGEETRKDRTKAHTHLLK
AAKLDPQLSSAFRYLGHYYREVANDYGRAQGCYKKAFQLDDDDAESGAALVDLSMRQGDM
DTSLAILQSVIEKATPGSAKWAWMRRGLYYLKIGEHQQAVADLQAALRADPEDWVCWECL
GEAYLNRRSFTAALKAFGKAHQLQPCSIYSVYQAAAIKQTLGKFKEAVAEYLQITAQQDY
VPALKGLGECQLSLAKSLMEDCRDGGAIDLIQQAIQNLFRAARLRPDLSCLWKLLGDACT
AVSTVSSTRAQVAVPALLAGLDPNTQSHLLNQAQTLKVGERCYARALKLRPEAPTLWYDL
GLNYYHQATRIPCLTEGDHTSPSLNLEKAQECLKKAIMMDSENHSYWNALGVISMNTGLE
NFALAQHCFIKSIKVETNNVVAWTNLGTLYLKKDNIELAHEAFKIAQSLEPLYVNCWIGQ
ALIAESVGSYDTMDLFRHTTELSTHMEGVKGYAYWVCSTLLDKSNRDSELYRYNIVQMNA
ISAAQVALSKYTERIQSDPEAFIMLGYLNEHLQLKRQALQAYQRAVELLQSMSSSEELAF
SLGSYGRALCTSGQWEEAVHVYKSTPLQELSDLVGLALAYCRAGLFPESVNTYERALAVA
SNEKEKAYILTALALLQHLQGNLDSAKTLLFKCSMLKEPISESLLCLCALGLVRGDATLA
AAALTELLKQGSASGSVVEQRCLLTCTLLVLQGNYSAVQREASRAVHSNPGNSSLWALLS
RVVPQYYPRKANGGATAGHVACLSSMTQGKRALLYSGVNQLASGRHSGEDSHRNALKTLQ
RAVFLCPDDPATWAGLMAACHTENTSCYLSGSAPCRQTLEQTLMSVVSEKVRNVEEIERP
LAQSLEGWVLQQAVTGLMLEGQLEQAEALCTQVLTVSPEHPAVMLSLRQVQCQRLLLAGG
GAVLPEPVLEQLNKAVAMNRTNLGAWHWLAEVYRGQGLLVQAVMAYRQSLQLASQLGVHS
CQVASLLRLALLALGPCMAGVPGNEWKDLVLEATTEVLKLGSSSAALLFQALLQYVTKMA
ARETRRLLERLVYVPSQDFPVTVVQVASWYLLRHLHAKNDQELLNVLLQHAKMNGDQRLL
EFHSQLASSPS
NT seq
4716 nt
NT seq
+upstream
nt +downstream
nt
atgtctagtaaagaagtcaaagccgcactgaaaagtgcgagagagtccattaaaaacaag
gagttcaaagaggctctgaaacactgcaagactgttttgaaacttgagaagaacaattac
aatgcctgggtattcatcggcttggcagccagtgaactggagcaaccagatcagtcacag
acagcttataaaaaggcggtggacctggagcccgagcagctgctggcttggcagggctta
gcaaatctatatgaaaagactgatcagtgggatttcaaagttgagctacctaacgtctat
cagaagcttgtcgagctgtatgcaagctcagacaaaaacaaatgttatgaaatgatccaa
aaactgtcagatgtttatcagtctgacaaagaacatttaaagttggcggaagtttggctg
caactcattcagctgaaagaagaagaggctgtggataagaaagagttagtgcagctattg
caacagatgacccagctcctctcagactgcatcactgaggaggagcaggacaatgaaatt
caacagcatttagtcacagcatttgagaaggccatggttctcatggatcctgtaccagga
gaggaacacaagaagatctcagctgactatgtcaaatgtctgtcaaagctgccacaagaa
gaagccaaaatgaaagtggcatgccagtccatgttgtccttctaccccaaccaaagctac
ccactggaggttctttgttctcattaccttaaaacaggtagcatgaatgatgatgcagtt
agctgtttctcccggctcctggatgtggcccctaacaatggattaggtcacttgggcctg
ggcaccaaagcactgcaagaagggaggtataaagatgccattaaggaccttgcacaagga
ctgaagaaaattaattcaactgcaggatggtacagtctggctgaagctcagtttaaaatg
cacagatactctgacagcgctgcatcatgctcccaaggtttagatgtgtgtacctccgga
gacaaggagctgaggggcaaactgctgagattgaagctagaggctttcgtaagaagtgga
ggagggaaggccgcagacgaggctttggagacgttctcacatattcccgaagctgaaaaa
gaccctcttctattggccttcaaaggacgcgcatatcttaacaaaggacagattgatcaa
gctcttaagctgtcatcacaactggtggcgtccaacccgaacttggcccagggattggta
ctgagaggactggcacatttagccgagggcaagaagcaactgtcagagcagagtttcctg
aaggctgctagccagagcccagacagtggagaatattatttcttgcttggacaactctac
tgggacatgggagaggagacccgtaaagaccggaccaaagcccatacacacttactaaag
gctgcaaagttagatccacagctcagcagtgcatttcgctaccttggccattattatcgg
gaggtggcaaatgattatggccgtgcacaaggctgctataagaaggcctttcagttggac
gatgacgatgctgaatccggtgctgccttagtggatctcagtatgaggcagggggatatg
gacacttccttagcaatacttcagtctgtcatagagaaagccactccaggctcagctaag
tgggcctggatgagacgaggcctttactacctgaagatcggagaacatcaacaggccgta
gctgatctgcaggcagctctgagagcagaccccgaggactgggtgtgttgggagtgttta
ggtgaggcctacctaaaccgccggagcttcacagcagctctgaaagcctttggtaaggcc
catcagcttcaaccgtgctccatctacagtgtctaccaggctgctgctatcaaacagact
ctgggcaagttcaaagaggcggtcgcagagtacttgcagatcacagcacagcaggactat
gttcctgctcttaaaggtcttggggagtgccaactgtctctggcaaagagtttaatggag
gactgcagagatggaggagccattgacctcattcagcaagccatacagaacctcttcaga
gctgcacggctgcgaccagacctgtcttgtttgtggaagctacttggagatgcttgcact
gcagtcagcactgtgtcatcaaccagagcccaggttgcagtgccagccttactggctggt
ttagaccctaacacacagagccacctactgaaccaagcccagactctcaaagttggtgag
aggtgctatgctcgtgctttgaagctgaggcctgaggcccccaccctttggtatgaccta
ggactcaactattaccaccaggccacccgcataccctgcctcacagagggagaccacacc
tccccatctctgaacctggagaaggcccaggagtgtttgaaaaaggctatcatgatggac
agcgagaaccacagctactggaatgcactgggagtgatttccatgaacacaggtctggag
aactttgctctggctcagcattgcttcatcaagtccattaaagttgagacaaacaatgtt
gttgcctggacaaacctgggtactctgtatttgaagaaggacaacatagagcttgcacat
gaggccttcaagattgctcagtccttggagccactttatgtcaactgctggattggacag
gcactaatagcagaaagtgtgggaagctacgacaccatggatcttttcaggcacacgact
gaactaagcacacatatggagggagtgaaaggttatgcctactgggtttgttccaccctg
ctggataagagcaacagagactctgaactgtaccgctacaacatcgtgcagatgaatgcc
atctctgctgctcaggtggcacttagcaagtacacagagaggatccaatcggaccccgag
gccttcattatgctgggctacctgaatgagcatctgcagctgaagaggcaggccttacag
gcttatcaaagagcggttgagctgctgcagtccatgtcctcctcagaagagctggccttt
tctctgggcagctatggccgtgctttatgtacgtcaggccagtgggaggaggcagtgcat
gtttataaatccactccactgcaggagctcagtgacctggtcgggctggctctggcctac
tgcagggcaggactcttcccagaaagtgtcaacacctatgaacgggcattggctgtggca
tccaatgagaaggagaaagcttacatattgacagctctggccctgctgcagcacctgcag
ggcaacctggactcagccaagactctgctgtttaaatgctcgatgttaaaggagccgatc
tcagagtctctgctgtgtttatgtgctctgggattggtccgcggagacgccacgctagct
gctgctgccctgactgagctgctaaagcaaggttcagcttctgggagtgttgtcgagcag
cgatgtctactcacctgcaccttgctggtcctgcagggcaactacagtgcggtgcaaaga
gaagcttccagagctgtacacagcaatcctggaaactcgtctctgtgggcccttctgtcc
agagtggtcccacaatactaccccagaaaggcaaacggtggtgccacggccggccatgta
gcctgtctctccagtatgacccaaggaaagagggcgctgttgtacagtggagtgaaccag
ctggccagcgggagacactctggagaggacagtcacaggaatgcactgaagactttgcag
agagccgtgttcctctgtcctgatgatccagcaacgtgggcggggttaatggctgcctgt
cacaccgaaaacacttcctgctatctttctggttctgctccctgcagacaaacactggag
caaaccctcatgtcagtggtctctgagaaagtgcgtaatgtggaggagatagagcgccct
ctggcccagtctctggaaggctgggtactacagcaggcagtgactggtctcatgctggag
ggacagctggagcaggcagaggccctttgcacacaggtgctgaccgtgtcccccgaacac
ccagcagtgatgctgtcattgagacaagtgcagtgtcagcgcctcctcctggctggaggt
ggtgctgtcctcccagagcctgttttagagcagctcaacaaagccgtggcgatgaaccgc
accaacctcggcgcctggcactggctggccgaggtgtatcgtggccagggtctgctggtt
caagcagtcatggcgtacaggcagagtctgcagctggcctcgcagctcggcgtgcacagc
tgccaggtggccagcctgctccgacttgccctgctagctcttggaccctgtatggcgggt
gtcccaggaaatgagtggaaggacctggtgctggaagccactacggaggttttgaagctg
ggctcgtcctctgcggctctccttttccaggccctgcttcagtacgtgaccaagatggct
gcgagggaaacaaggaggttgctggagaggctggtgtacgttccctctcaagatttccca
gtgacggtggtgcaggtggccagctggtacctcctcagacacctgcacgccaaaaacgac
caggaactcctgaatgtccttttgcaacatgccaaaatgaacggagatcaaagactgctg
gagtttcattcacagctcgcctcgtctccatcctga
DBGET
integrated database retrieval system
