Brachyistius frenatus (kelp perch): 138636583
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Entry
138636583 CDS
T10614
Symbol
edc4
Name
(RefSeq) enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
bfre Brachyistius frenatus (kelp perch)
Pathway
bfre03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bfre00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
138636583 (edc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bfre03019
]
138636583 (edc4)
Messenger RNA biogenesis [BR:
bfre03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
138636583 (edc4)
mRNA degradation factors
5'-3' decay
Decapping complex
138636583 (edc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
Beta-prop_WDR3_1st
Beta-prop_WDR5
WD40_WDHD1_1st
Beta-prop_THOC3
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_Prp19
Beta-prop_WDR3_2nd
WDR55
PIN_8
Pdc1_Ge1
Motif
Other DBs
NCBI-GeneID:
138636583
NCBI-ProteinID:
XP_069580746
LinkDB
All DBs
Position
Unknown
AA seq
1397 aa
AA seq
DB search
MATNSNMDIEGATQHLRDILKLDRPGNSADVQSSDGRRKPSFNGELNGLLGVGLLGSTDR
STMSDSTRPISTDLSTAQETQIICLTGDDGSTCIPITSNNVEIVASQDSSINSKARGSNK
VKIQPVAKYDWEHKYYYGRLIAVSNSFLAYAIRGANNHAMIRVLSVGFAERSLLKGFTGA
VTDLAFAHLDSSLLGCVDEAGNLMVWQLTCTGSKILDQIVVHIRRPDDTPLNSHRRLIWC
PFILDDNEENQDDTSQTLALLHEDRAEVWDLEILRASNSSWPLDATELKEGLITIKGHTQ
RVSEGALSPDGTVLATASHDGYIKFWQIYIEGGQDKPRCLHELRPHGGRPLSCLLFCDNH
KRQDPEVPFWRFLITGADQNQELKMWCTVSWTCLQTIRFSPDPFNSSALPGLKASLDLAA
EYLILTDVQRKVLYVMELRQDLDKGKANFTAVSEFLLTHPVLSFGVRDVAHSRLRHTEVL
PAEEESESMTTEGTQGPTESKSGIQIKLYCVHTKSLQDVQIWFQPNMISSSVDFLSHSDS
HDGFAAFSDHLTDQSSDKESGSGSQTDLRKIPSLPAPSDFLSNSSGGGAMPKLMTPDAFM
TPSTSVPASPGSSASSLTIITAISSNSDSTNRALDDVSQSLNRGDGSNTNGGGGLSLSAS
TSTPRAASALLLPGLESVPALASPAGPLALDSPQILDSPLLPPLASPTRARSPDVISSAS
TAMSQDMPEIASQTLQLQRGLVSGLEPSPLSALQTDSMASAASALHLLTSPRTANNSSLL
QLELGGSDGPAGGSAESEPRLSHTPSLLENALSQENPGAGGGSSDGGGGGSHTPWPAAPD
ITRETRNSLRDNGLGDCSREESKDRHLSSPYHMRSYHLSQNDCQDGGTEQSDPDDEVASL
GSSSGNCGSRSSHRLPVKDWKSSPRASPKLKRKLKKDDSESSQSRQTDSAQFNAEVQDEL
LMLLRSQQRELTDLRGQIETMQSSIMAQVEHVLTTHQEHEHRRLERVLAESQNHQQQLQE
QLSQQLGHTLSSALTNRMDKVLRDEMKKTVPQTISKSLEPVTGQLSNTIAAKLTAVEIAL
KDNVSKVVKSKNTTDAIGRAAAEAMQGPIQAAYKDAFQSIVLPVFERGCQSMFQQINDSF
KQGTHEYIQQLEAHLKSRKQREQDMRDPVVGQLQQMMDGFQSSTDQLANNITANVRAEVQ
HQIQMMVGNLQESILSQVQRIVKGEVSLAMKEQQAAVTSSIMQAMRSAAGTPVPTAHLDY
QTQQANILQLLQQGQLNQAFQQALSATDLNLVLYVCETIDSQQVFGQPPCPLSQPVLLSL
IQQLSSNLSTRSELKISYLEDAVMNLDHSDPLTRDHMTSVLSQVRPKLYGFLQQEPHNPI
SKRARRLMMMLQGLVSH
NT seq
4194 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccaattctaatatggacatcgagggtgcgacgcagcacctccgggacatcctg
aagctcgaccgtcccgggaacagcgccgatgtgcagtcgagcgacggtcggaggaagccg
tctttcaatggcgagctgaacgggctgctgggagtcggcctgctgggcagcaccgaccgg
tccaccatgtcggactctaccaggcccatctccacggacctcagcaccgctcaggagact
cagatcatctgcctcaccggtgacgacgggtccacctgcatccccatcacctccaacaac
gtggagatcgtggcgagtcaagactccagcatcaacagcaaagctcggggcagcaacaag
gtgaagattcaacctgtcgccaagtacgactgggaacacaagtattactacggccggctg
atcgccgtgtccaacagcttcctggcctacgccatccgaggtgccaacaaccacgccatg
atccgcgtcctgagcgtgggcttcgccgagcgctcgctgctgaaggggttcaccggggcc
gtcaccgatctggccttcgcccacctggactcttccctgctgggctgcgtggacgaggcg
ggcaacctgatggtctggcagctcacctgcaccggcagcaagatactagatcaaatcgtg
gttcacatccgacggccagacgacactccgctgaactcccaccgccgcctcatctggtgc
ccgttcatcctggacgacaacgaggagaaccaggacgacaccagccagacgttggccctc
ctccacgaagacagggctgaagtttgggacctggagatcttgagagccagcaacagcagt
tggcctcttgacgccacagaactgaaggaaggcctcatcacgatcaaaggtcacactcag
cgggtcagcgaaggcgccctgtctccggacggcaccgtgctggcgacggccagccacgac
ggatacatcaagttctggcagatttacatagaaggaggacaggacaaaccccgatgcctt
cacgagctgcggcctcacggagggcgtcctctctcctgcctgcttttctgcgacaaccac
aagcgtcaggaccccgaggttcctttctggcggtttctgataaccggagcggatcagaac
caggagcttaagatgtggtgcaccgtctcctggacctgtttacagaccatcaggttttct
ccggatccgttcaactcgtcggcgctgccgggtctgaaggccagtctggacctcgctgcc
gagtacctgatcctcaccgacgtgcagaggaaggttctgtacgtgatggagctgcggcag
gacctggacaaagggaaggcgaacttcacggccgtgtccgagttcctgctcacccacccg
gtgctcagcttcggcgtccgggacgtcgcccacagccgcctgcgacacaccgaggtcctc
cccgccgaggaggagagcgagagcatgacgacagagggcactcaaggaccaactgagtcc
aagtctgggatccagattaaactctactgtgttcacaccaagagtctgcaggacgtccag
atctggtttcagcccaacatgatttccagctctgtcgacttcctttctcattcagattct
cacgatggttttgccgcgttctcggaccacctcaccgaccagagctccgacaaggagtcg
gggagcggctcccagaccgacctgcggaagatcccgtcgcttcccgctccctccgacttc
ctgtcgaactcgagcggcggcggagcgatgcccaagctgatgactcccgacgccttcatg
acaccgagcacttcggtgccggcgtctcccggcagcagcgccagcagtctgaccatcatc
acggccatcagcagcaactctgactcaactaacagagctctggacgacgtcagccagagt
ctcaacaggggggacggcagcaacaccaacggcggcggcggtctgtctctctccgcctcc
accagcaccccgagagcagcgtcggccctcctgctgcccggactggagagcgtaccggct
ttggcgtcccccgccggtccgttggcgctcgacagcccccagatcctggactcccccctc
ctgccgccgctggcctctccgacgcgcgcccgctcccccgacgtcatctcctcggcctcc
acggccatgtcccaggacatgccggagatcgcgtcccagaccctgcagctccagcgggga
ctcgtgtccggcctggagccctcgccgctctccgccctccagacggacagcatggcgtcc
gccgcgtccgctctgcacctgctgacctcgccgcgcaccgccaacaacagcagcttgttg
cagctcgaactcggaggctcagacgggccggcgggcgggtcggccgagtccgagccccga
ctcagccacaccccgtctctgctggagaacgcgctgtcccaggagaaccccggagccgga
ggagggtcctcggatggcggcggcggcggcagccacacgccttggccggccgccccggac
atcaccagggaaaccaggaacagtctgagggacaacggcctcggagactgctcgagagag
gagtcgaaggaccgacacctgagctcgccttaccacatgcggtcctaccacctctcacag
aacgactgccaggacggcggcaccgagcagagcgacccagacgacgaggtggccagtctg
gggtcgtcctcgggaaactgcggctcccgctcctctcacaggttgccggtgaaggactgg
aagtcgtcgccgcgagcgtcgccgaaactaaagaggaagctcaagaaggacgacagtgaa
tcgtctcagtccaggcaaacagattctgctcagtttaatgccgaagtgcaggacgagttg
ttgatgctgctgcgcagccagcagagggagctgaccgatctgcgcggacagatcgaaacc
atgcagagctccatcatggcgcaagttgaacacgtcttgacgacccaccaggaacacgag
caccgccggctggagcgagttctggccgagagtcagaaccaccagcagcagctccaggag
cagctgagccagcagctcggtcacaccctcagctcggctctcaccaaccggatggacaaa
gtgctgcgcgacgagatgaagaaaacggtcccgcaaacaatctctaaaagtctggagccg
gtgacgggtcagctgagcaataccatcgccgctaaactgaccgccgtggagatcgcgctg
aaggacaacgtcagcaaggtggtcaaatccaagaacacgacggacgcgatcggccgggcg
gcggccgaagcgatgcaggggccgatccaggcggcctacaaagacgccttccagagcatc
gtgctgccggtgttcgagcgaggctgccagtccatgttccagcagatcaacgacagcttc
aagcaaggcacgcacgaatacatccagcagctcgaggctcacctgaagagcaggaagcag
cgggagcaggacatgcgagaccccgtcgtcggccagctgcagcagatgatggacggcttc
cagagctccaccgatcagctggccaacaacatcacagccaacgtccgggccgaggtccaa
caccagatccagatgatggtgggaaacctgcaggagtctattctcagccaagtgcagcgg
atcgtcaaaggggaggtgagcctggcgatgaaggagcagcaggcggccgtcacctccagc
atcatgcaggccatgcggtcggcggccggcaccccggtgcccaccgcgcacctcgactac
cagacgcagcaggccaacatcctgcagctcctccagcagggccagctcaaccaggccttc
cagcaggctttgtcggcgaccgatctgaacctggtcctgtacgtatgcgagaccatcgac
tcccagcaggtgttcggtcagcctccgtgtcctctcagccagcccgtcctgctgtcactc
atccagcagctgtcctccaacctctccacccgctccgagctcaagatcagctacctggag
gacgcggtgatgaacctggaccacagcgacccgctgacccgcgaccacatgacgtcggtg
ttgtcgcaggtccgaccgaagctgtacggcttcctgcagcaggagccgcacaacccgatc
agcaagcgggcgcggcgcctgatgatgatgctgcagggcctcgtcagccactag
DBGET
integrated database retrieval system
