KEGG   Brachyistius frenatus (kelp perch): 138636767
Entry
138636767         CDS       T10614                                 
Symbol
rfc4
Name
(RefSeq) replication factor C subunit 4
  KO
K10755  replication factor C subunit 2/4
Organism
bfre  Brachyistius frenatus (kelp perch)
Pathway
bfre03030  DNA replication
bfre03410  Base excision repair
bfre03420  Nucleotide excision repair
bfre03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:bfre00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    138636767 (rfc4)
   03410 Base excision repair
    138636767 (rfc4)
   03420 Nucleotide excision repair
    138636767 (rfc4)
   03430 Mismatch repair
    138636767 (rfc4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:bfre03032]
    138636767 (rfc4)
   03036 Chromosome and associated proteins [BR:bfre03036]
    138636767 (rfc4)
   03400 DNA repair and recombination proteins [BR:bfre03400]
    138636767 (rfc4)
DNA replication proteins [BR:bfre03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    138636767 (rfc4)
  DNA Replication Termination Factors
   ELG1-RFC complex
    138636767 (rfc4)
Chromosome and associated proteins [BR:bfre03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    138636767 (rfc4)
DNA repair and recombination proteins [BR:bfre03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     138636767 (rfc4)
  Check point factors
   HRAD17(Rad24)-RFC complex
    138636767 (rfc4)
SSDB
Motif
Pfam: Rep_fac_C AAA RCF1-5-like_lid DNA_pol3_delta2 AAA_lid_RFC1 Rad17 AAA_assoc_2 AAA_16 AAA_22 AAA_30 AAA_11 Mg_chelatase DUF815 SLFN-g3_helicase AAA_19 Gp44_lid AAA_28 AAA_14 RuvB_N Cdc6_lid AAA_24 AAA_5 ResIII wHTH-PRTase_assc AAA_7 AAA_3 DNAX_ATPase_lid
Other DBs
NCBI-GeneID: 138636767
NCBI-ProteinID: XP_069581085
LinkDB
Position
Unknown
AA seq 357 aa
MQAFLKGPTGHATRPHKDKAAAGPGSDKRAKAVPWVEKYRPKCVDEVAFQEEVVAVLKKS
LEGADLPNLLFYGPPGTGKTSTILAAARELYGPELYRQRVLELNASDERGIQVVREKVKN
FAQLTVAGTRSDGKPCPPFKIIILDEADSMTAPAQAALRRTMEKQSRTTRFCLICNYISR
IIEPLTSRCSKFRFKPLDNRIQEERLLEICDKENLKYTKESIAALVQVSEGDLRKAITFL
QSAARLNADQEMTEHAVTEIAGVVPSNMIDSLLHICFKGTFEKLEVSVRDMVDDGYAATQ
ILSQLHESIIERDLSDKQKSAITEKMAVVGKCLSDGADEYLQVLSLCSLIMQQASHN
NT seq 1074 nt   +upstreamnt  +downstreamnt
atgcaggcctttctgaagggaccgaccggccacgccaccagacctcacaaagacaaggcg
gcagctgggcccggctcggacaagagagccaaggccgttccctgggtcgagaaatacagg
ccgaagtgtgtcgatgaggtggcctttcaggaggaggtggtggcagtgctcaagaagtct
ctggaaggagcagatcttcccaacctgctcttctacggccctcctggaacaggaaagacg
tcgaccatcctcgctgctgccagagagctttatggtccggagctgtacagacagagagtc
ctggagctcaacgcctccgacgaacgaggcatccaggtcgtcagagagaaggtcaagaac
tttgctcagctcaccgtggcggggactcgctccgatgggaagccgtgtcctccattcaag
atcatcatcctcgatgaggcggactccatgacggcaccggctcaggccgctctcagacgg
accatggagaagcagtctcgcaccacccgcttctgtctcatctgtaactacatcagcagg
atcatcgaacctctgacctccaggtgctccaagtttcgctttaaacctttagacaatcgg
atccaagaggagcgtctgctggagatctgtgacaaggagaacctcaagtacaccaaagag
agtatagcagcgttggtgcaggtatccgagggagacctacggaaagccatcacatttctc
cagagcgccgcacgcctcaacgccgaccaggaaatgactgagcacgctgtcactgaaata
gctggagtcgttccctccaacatgattgacagcttgctccacatctgcttcaaaggaaca
tttgagaagttggaggtatcagtgagggacatggtggatgacggctacgcagccacacag
atcctgagtcagctccacgagtccatcatagagcgggacctgagcgacaagcagaagtca
gccatcacagagaagatggcggttgtggggaagtgcctgtcagacggtgcagacgagtac
ctgcaggtgttgagtctgtgttcgctcatcatgcagcaggcctcccacaactaa

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