Bufo gargarizans (Asiatic toad): 122920166
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Entry
122920166 CDS
T07965
Symbol
CNOT1
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
bgar
Bufo gargarizans (Asiatic toad)
Pathway
bgar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bgar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122920166 (CNOT1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bgar03019
]
122920166 (CNOT1)
Messenger RNA biogenesis [BR:
bgar03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122920166 (CNOT1)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
122920166 (CNOT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
122920166
NCBI-ProteinID:
XP_044125354
LinkDB
All DBs
Position
10:complement(128228893..128244606)
Genome browser
AA seq
2425 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQLEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECASLITKPNFISTLAYAIDNPLHYQKSLKPSPHLFTQLSKVLK
LSKVQEVIFGLALLGSSSTDLRGFAAQFVKQKLPDLLRSYVDVDVSGSQEGGFQDIAIEV
LHLLLSNLLFGQKGAFGVGQEQIVAFLKTLRRDFPQERCPVVLAPLLYPEKRDILMDRIL
SDSGGITKTMMDSSLADFMQEVGYSFCASVEECRNIIVQFGVREVTAVQVARVLGMMART
HSGLTDGISLQSISSPGSGIWSDGKDKNDSVQAHTWNVEVFIDVVKELNPSLNFKDVIYE
LDNPMFLVRDSKGLQTVVYGIQRGLGMDVFPVDLIYRAWKHAEGQLSFIQYSLMNPDIFC
FADYPCHAVATDILKAPPEDDNREIATWKSLELIESLLRLAEVGLYEQVKQLFSYPIKHC
PDMLVLALLQINPSWNTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
AMAEWYMRGEQYDQARLSRILDVAQDLKALSMLLNATPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFVQACMTFLKRRCPSILGGIVPEKDQPKSAQLPPETLATMLACLQACAG
SVSQELSETILTMVANCSNVVNKARQPPPGVMPKGRPPSTSSLDAISPVQIDPLAAMASL
SIGGSAVPHTQSLPSFPPNLGSAFSTPQSPAKAFPPLTTPNQSTGFSGLGGLSSQLPGGL
GTGSLSGMGTGGLGLSAVNSDPFGQRKLSTSGLNQPTFQQSKSCPSAVLCLLLGSGHLSL
IHLSPAADLSQVWPEANQHFTKEIDDEANSYFQRIYNQPPHPTMSVDEVLEMLQRFKDSS
IKREREVFNCMLRNLFEEYRFFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLE
ALRKPYGSKMYFFGIAALDRFKNRLKDYPQYCQHLASITHFIQFPHHLQEYIEYGQQSRD
PPVKMQGSITTPGSIALSQAQAQAQAQVPAKAPLPGPVSTNAVTTSTATTSAKTITITRP
TGVSFKKDVPPSINTTNIDTLLVATDQAERTVEPPENVQEKIAFIFNNLSQSNMTQKVEE
LKETVKDEFMPWVSQYLVMKRVSIELNFHSLYSNFLDALKNLEFNKMVLAETYRNIKVLL
TSDKAAANFSDRSLLKNLGHWLGMITLAKNKPILHTDLDVKSLLLEAYMKGQQELLYVVP
FVAKVLESSIRSVVFRPPNPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLAIDINDL
KPGNLLKDKDRLKSLDEQLSAPKKDVKQPEELPPITNANEYAIRTAGKLWASVEKQESDA
VFTATATAPPPSVTCTATAPPQPQYSYHDIHVYSLAGLAPHITLNPTIPLFQAHPQLKQC
VRQAIERAVQELVHPVVDRSIKIAMTTCEQIVRKDFALDSEESRMRVAAHHMMRNLTAGM
AMITCREPLLMSIATNLKNSFATAMRAASPQQREMMEQAAAQLAQDNCELACCFIQKTAV
EKAGPEMDKRLATEFELRKHARQEGRRYCDPVVLTYQAERMPEQIRLKVGGVDPKQLAVY
EEFARNVPGFLPTNDLTQPTGFLAQPMKQQAWATDDVAQIYDKCITELEQHLHAIPPTLA
MNPQAQALRSLLEAVALARNSRDAIAALGLLQKAVEGLLDATSGADADLLLRYRECHLLV
LKALQDGRAYGSPWCNKQITRCLIECRDEYKYNVEAVELLIRNHLVNMQQYDVHLAQSME
NGLNYMAVAFAMQLVKILLVDERSVSHVTEAEFFHTIETLMRINAHSRGNAPEGLPQLMD
VLRSNFEAMLERAQGGPNFMMHSGISQASEYDDPPGLREKAEYLLREWVNLYHSAAAGRD
STKAFSAFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAEQQHNPAANPTMIRAK
CYHNLDAFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGVLLQDHEVRQSEFQQLPYH
RIFIMLLLELNAPEHVLETINFQTLTAFCNTFHILRPTKAAGFVYAWLELISHRIFIARM
LAHTPQQKGWPMYAQLLIDLFKYLAPFLRNVELTKPMQILYKGTLRVLLVLLHDFPEFLC
DYHYGFCDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSEINIAPRILTNFTGV
MPPQFKKDLDSYLKTRSPVTFLSELRSNLQVSNEPGNRYSIQLINALVLYVGTQAIAHIH
NKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRYPNSHTHYFSCTMLYL
FAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFKFWNHDFVHCAPEIEK
LFQSVAQCCMGQKQAQQVMEGTGAS
NT seq
7278 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgactcgctttcgctggccttgtctcaaatcagctacctggtggacaacctg
acgaagaaaaattaccgcgccagccagctggaaatacaacacattgtgaatcggcacggc
ccggaggcagacaggcacttgttacgctgtctattctctcatgtggatttcagtggcgat
ggtaaaagcagtggcaaggatttccatcagacccagtttctgatccaggagtgtgcctcg
ctgataacaaaaccgaatttcatctctactcttgcgtacgccattgacaatcccttgcac
tatcagaagagcctgaagccgtctcctcatctcttcacccagttgagtaaagttctgaag
cttagcaaagtccaagaggtcatctttggcttggctcttctcggctcctccagcactgac
ctgcggggttttgctgcgcagtttgtgaagcagaagctcccggatctcctgcgctcttac
gtagacgtggacgttagtggaagtcaagaaggtggattccaagacatcgccatagaggtc
ctacacctcctcctctccaatctccttttcggccagaagggagccttcggggtcggacag
gagcagattgtagccttcctcaagaccctccgcagagattttccccaggagcgctgtccg
gtggtgcttgcaccactcctctaccctgaaaaacgggacatcttgatggaccggattctt
tctgactctggagggatcaccaaaaccatgatggacagttccctggcagacttcatgcag
gaggttggctacagtttctgtgccagcgtggaggaatgccgcaatatcatcgttcagttt
ggtgtccgagaagttactgctgtgcaggtggctcgggtgttggggatgatggcccggaca
cactcggggctgacggatggtatctccttgcagtctatttcatctcctggcagtggaatc
tggagcgatggtaaagacaaaaatgacagtgtgcaggcccatacctggaatgtggaggtc
tttatagatgttgtgaaagagctgaatccaagcttgaactttaaggatgtcatatatgag
ctcgataatccaatgttcctggttcgtgacagcaaaggcctccagactgtggtgtatggc
atccagagagggcttgggatggacgtgttcccggtggatctgatctacagggcttggaag
catgcagaggggcaactctccttcatccagtattccctgatgaatccagatattttctgc
tttgcggattacccctgtcatgctgtggccacagatatcctcaaggcccccccagaggat
gacaatcgtgagattgccacatggaaaagtctggagctgatcgagtccctgcttcggctg
gctgaggtggggctgtacgagcaggtcaagcagctcttcagctatcccatcaagcactgt
cccgatatgctggtgctggccttactccagatcaatccctcgtggaacaccctgcgccat
gagctcatctccacattgatgccaatattccttggtaaccatcccaactctgccatcatt
ttgcactatgcatggcatggtcagggccagtctccttccatccgacagctgatcatgcat
gctatggcagagtggtatatgcgtggtgaacagtatgaccaggctcggctttctcgtata
cttgatgtggcccaagatttaaaggccttatcaatgctgctgaatgctactccatttgcc
tttgtcattgaccttgctgcactcgcctcccgacgggaatacctcaaactggacaaatgg
ttgactgacaaaatccgggaacatggggagccttttgtccaggcttgcatgaccttcctc
aaacgacgctgtccttccatacttggtggcattgttccagaaaaagaccaaccaaaaagc
gcccaacttccaccagaaaccctggcaaccatgctggcatgtctccaagcctgcgctggg
agcgtgtcacaggagctgtctgaaaccattcttaccatggtcgctaactgtagtaacgtg
gtgaacaaggctcgtcagccgcctccgggggtgatgccaaaaggccgtcctcccagcacc
agcagcttggacgccatttccccagtacagattgatcctctcgctgccatggcctctctc
agcatcggtggttctgctgttcctcacacacagagcttgccctcatttcctcccaacctg
ggctctgccttcagcaccccacagtcaccagcaaaggcctttccaccactgaccactccg
aaccagtccacagggttcagtggccttgggggcctctcctcccagctgccaggtgggctc
ggcacaggcagtctttctggaatgggcacaggtggtctagggctttctgctgtcaacagc
gacccatttgggcaaagaaaactcagcacttctggactcaatcagccaacattccaacag
agtaagtcctgtccctctgcagtgctctgcctgctcctgggcagtggtcacttatctctc
atccatctgtctcctgcagccgatctgtctcaggtgtggccagaggctaaccagcacttt
actaaggagattgatgatgaggcaaacagctactttcagcggatttacaaccagccgcct
cacccgaccatgtctgtggatgaggtactggaaatgctgcagaggtttaaggattccagt
attaagcgggagcgtgaggtctttaattgcatgctccgaaacctgttcgaagagtaccgc
ttcttcccccagtatccagacaaggagctccatatcaccgcctgcttgtttggtggcatc
attgagaagggacttgtcacgtacatggctttggggctggcgctgcgctatgtacttgaa
gctctccgcaaaccttatggatccaaaatgtatttctttggcatcgctgcactagatagg
tttaaaaacagattgaaagattacccccagtattgtcagcacttggcttctatcactcac
tttatccagttccctcatcacctgcaagagtacatagagtacggtcagcagtcccgggat
cctccggtcaagatgcagggctcaatcaccacccctggaagcattgcactttcccaagcc
caggcacaagctcaggcccaggtcccagccaaagcgccacttcctggtccagtgagcaca
aacgcagtcaccacctctactgccacaacttcagccaaaaccatcactatcaccaggccc
acaggcgtcagcttcaagaaggatgtaccgccgtccatcaacactaccaatatagacact
ctgcttgtggcaactgatcaggcggagaggactgtggagccgccagagaacgtgcaagag
aaaatcgccttcatctttaacaacttgtcccagtccaacatgacgcagaaggtggaggag
ctgaaggagacagtgaaggatgaattcatgccctgggtgtcccaatatttggtgatgaag
agggtcagcattgaactgaacttccatagcttgtactctaacttcctggatgctctgaag
aacctggagttcaacaaaatggttctggctgagacttaccgcaatatcaaggtgcttctg
acatctgacaaagctgccgccaacttttctgaccgctctctgctgaagaacctgggccac
tggttgggaatgatcacgctggcaaagaacaagcccatcctgcacacagacctggatgtg
aagtccttgctgctggaagcctatatgaagggacagcaagagctgctctatgttgtgcct
tttgttgccaaagtcttggagtccagcatcaggagtgtggttttccgcccgccgaatccc
tggactatggctataatgaatgtactggcagagcttcatcaagaacatgacttgaagctg
aatcttaagtttgagattgaagttctgtgtaagaatctggccatagacatcaatgacttg
aagcctggcaacctgctgaaggacaaggatcgtcttaaatccttggatgagcagctttct
gcccctaagaaggatgttaagcagccggaggagctgccgccgatcaccaatgccaatgag
tatgccatccgcacggctgggaagctctgggcctcggtggagaagcaggagtctgatgcg
gtcttcacagcaactgccacagcaccaccgccgagtgtcacatgcacggccactgcacca
ccacagcctcagtacagctaccatgatatccatgtctactctcttgcaggacttgctcct
cacatcacacttaatcccacgatccccctcttccaggctcatccgcagctcaagcagtgt
gtgcgccaggcgatagagcgtgccgtgcaggaactggtacatcctgtggtggaccgttcc
atcaagatagcaatgaccacttgtgagcagatcgtgcggaaggattttgcgttggattct
gaggagtctcggatgagggtggcggctcatcacatgatgagaaacctgactgcaggcatg
gccatgattacctgccgggagcctctgctcatgagtatcgcaaccaacctcaagaacagc
tttgccacagccatgcgggcggcctccccccagcagcgggagatgatggagcaggcagcg
gctcagctcgctcaggataactgtgaactggcctgctgcttcattcagaagacggcggtg
gagaaggctgggccggaaatggacaaacggcttgccacagagtttgaattgaggaagcat
gccaggcaggaaggccgtcgctactgtgatcctgttgtgctgacgtatcaagcagagcgc
atgccggaacagatccgactgaaggtcggcggtgtggatcccaagcagctggctgtttat
gaggagtttgcacgtaacgttcccggtttcctgcccaccaacgatctgacccagcccaca
ggattcttggctcagcccatgaagcaacaagcctgggccaccgatgatgtcgctcagatt
tatgataagtgcataactgaattggagcaacatctgcacgccattcctcccactctggcc
atgaacccccaggcacaggctctgcgcagcttactggaggccgtggcccttgctaggaac
tctagagatgccattgctgcattaggcctactacagaaggctgtagagggtctcctggat
gccacgagtggagcagatgctgacctcctcctccggtatcgggagtgtcatctccttgtc
ctgaaggctctccaggatggccgggcttatggctctccttggtgcaataagcagatcact
aggtgtttaatcgaatgccgggatgaatataagtacaacgtggaggccgtggagctgctg
atccggaaccatctggtgaacatgcagcagtatgatgtccatttggctcagtccatggag
aatgggctgaattacatggccgtggccttcgcaatgcagctggtgaagatcttactggtg
gatgagcgcagtgtcagccacgtgactgaggcagagttcttccacaccatagaaactctg
atgcgcatcaatgcccactccagaggcaatgctcctgaagggctcccccagctgatggat
gttttgcgctctaattttgaggcgatgcttgagcgggctcagggtgggcctaacttcatg
atgcattctggcatctcccaagcgtcagagtacgatgatcctccaggcctgcgggagaag
gcagagtatctgctgagagagtgggtgaacctgtaccactcggcagctgccggacgcgac
agtaccaaagccttttctgcatttgttgggcagatgcatcagcaagggatcctgaagaca
gatgacctgatcactcgcttcttccggctgtgcacggagatgtgtgtggagatcagctac
agagcacaggcagaacagcagcataaccctgccgccaaccccaccatgatccgcgccaag
tgctatcataatttggatgcctttgtgagactcattgcgctgctggtcaagcattctgga
gaggccaccaatacagtgaccaagattaaccttctcaataaggtcttggggattgttgtg
ggggtcctgctccaggaccacgaggtgaggcagagtgagttccagcagctgccataccat
cggatcttcattatgttgctgctcgagctgaacgctccggagcatgtccttgagaccatc
aacttccagactctcacagctttctgcaatactttccacatcctgcggccgactaaagct
gcgggctttgtctacgcctggctggagctgatttcccatcggatctttattgcacgaatg
ttggcgcacacgccgcagcagaaggggtggcctatgtatgcccagctgctgatcgacctc
ttcaagtatctggcgccattcctccgaaatgtggagctcaccaaacctatgcagattctg
tacaagggcactctgcgggtgctgctggtgctcttgcatgacttccccgagtttctctgc
gactatcactacggcttctgtgacgtcatcccacccaactgcatccaactgaggaacctg
atcctgagtgccttcccccgcaacatgaggcttccagacccctttacgcccaacctcaag
gttgacatgctgagcgagattaacattgccccccggatcctcactaacttcactggagtg
atgcccccacagttcaagaaggacttggactcatatctgaagacacggtcaccggtcacc
ttcctctcagagctccgcagcaacctacaggtctctaacgagcctggaaatcgctacagc
atccagctgatcaatgcgctggtcctgtacgttgggacgcaggcgattgcacacatccac
aacaagggcagcactccctccatgagcaccatcactcactcagcccacatggacatcttc
cagaacctggctgtggatctggacactgaaggtcgctacctcttcctgaatgctatcgcc
aaccagctgcgctaccccaacagccacacgcactacttcagctgcaccatgctgtacctc
ttcgctgaggccaacactgaggccatacaggagcagatcacccgggtccttctggagcgg
ctgattgtgaacagacctcacccctgggggctactcatcaccttcatcgagttgattaag
aatcccgccttcaagttctggaaccacgactttgtgcactgtgccccagagattgagaag
ttgttccaatcggtggcacagtgctgcatggggcagaagcaggctcagcaggtgatggag
ggcaccggtgccagctag
DBGET
integrated database retrieval system
