Bufo gargarizans (Asiatic toad): 122930799
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Entry
122930799 CDS
T07965
Symbol
SCAF4
Name
(RefSeq) LOW QUALITY PROTEIN: SR-related and CTD-associated factor 4
KO
K13167
SR-related and CTD-associated factor 4
Organism
bgar
Bufo gargarizans (Asiatic toad)
Brite
KEGG Orthology (KO) [BR:
bgar00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bgar03021
]
122930799 (SCAF4)
03041 Spliceosome [BR:
bgar03041
]
122930799 (SCAF4)
Transcription machinery [BR:
bgar03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
122930799 (SCAF4)
Spliceosome [BR:
bgar03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR proteins
122930799 (SCAF4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
122930799
NCBI-ProteinID:
XP_044140336
LinkDB
All DBs
Position
3:592865142..592985224
Genome browser
AA seq
1338 aa
AA seq
DB search
MDAVNAFNQELFALMDMKPPISRAKMILITKAAIKAIKLYKHVVQIVEKFIKKCKPEYKV
PGLYVIDSIVRQSRHQFGFDKDVFGPRFIKNLTATFQCLYLCPTEDKSKIVRVLNLWQKN
GVFKIEIIQPLLDMAADAAPAELLADSSANEEGASPPPPTLPLDPPEEAPSSVPAVSVPQ
LPNPDAFAAVAQLFQSSQGQQLQQILQTFQQPPKPQSPVIDENVYAQVPTTAPQMNPMSH
QSERKTAFDKLLDRFDYDDEPEAADETKKEASSPSASPPQPPFQFPGEAMQPHPSFSQIP
GQMPNMDQFQAIQPRMIGMPQEPLLSQNPVPPTGQMLGFGMLAPQTYPTMVPPVVSQASP
QPFLPASFSAQQNDVQMAKESQQDVPMDVEEQSVQESKRQMTDRQKSASRSPKRRRSRSG
SRSRRSRHRRSRSRSRDRRRHSPKSRSQEKRDREKERERRMKGLPSIKSEAVSVCSTTLW
VGQLDKRTTQQDVGSLLEEFGPIESINMIPPRGCAYIVMVNRLDAYRALQKLSRGSFKVN
QKAIKIAWALNKGIKAEFKQYWDVEIGVTYIPWSKVKPEDLEALCEGGMLDNDTLCPDWK
PIIKKAESKEASQNGATDSAQAENIPSVPPPVPMLSVPIRQPMPAVPGLQPLPSVPPLSA
LPTVQGLQPSVTLTSIQGLPPPQGLPPPQGVPPLQGLPIPPSLPPLQGMPMPQGMHVPGF
PGPINIPPPGFAPGVPPPPFMRPGFNPMQMPPGFLPPPGMPPPMTPPVSLPPPMSGLGIP
TSAAGACASSNDPDVSQGNTLSLGSGRENIDSDDDGKGFGPPPQGGPNNVPGPMNPHHGA
SQGGAPQVPQTGATPGSSQGPPGPPQGPPGPPQGPPGPPQGPPGPPQGPPGPHQGPPXPH
QGPPGAHQGPPGAHQGPPGPHQGPPGPHQGPPGAHQGPPGAHQGPPGAHQGPPNSSHGPP
QGPPQTTSGSSHGLSHGPPIQSGPSQGPSTGTPPGPLIGLQSPSTGLLGARPGLIPLQRP
PGVPTPHMQRFPGMPHRPMLPHLAHRGPPPGPGGYGMPPPHGMRGPYPPQGHFGRQGGHG
GPEEGRPFRNERRGFNPDRHGFNSDRGDRHGFNPDRNERMRFNPEADDEFNPEMDEGPEF
NPEMDEGEAFTMDEEEEQGFKPDRPGFNPDRQNFRPDRPGFHPERQGFNSERPGFHPERN
DRQGFVPDRERFGRRSFGNRNEDEREHFGSRFDDRDHERPGRGRRPWGRGSPDHDRQRET
EERNRWPVGREREPRRVLLDFPDSGRKQILNENHDPPKGKAENPDKEKAESKEQKPAEEK
ASKMSPSSDPAKKESGST
NT seq
4017 nt
NT seq
+upstream
nt +downstream
nt
atggacgccgtgaacgcattcaaccaggagctttttgcgctcatggatatgaagcctcca
atttctcgagcaaaaatgattcttataactaaagcagcaattaaagccatcaagctttac
aaacacgtggtccagattgtagaaaagttcattaaaaagtgtaaaccggaatataaagtg
ccagggttatatgtcattgactcaattgttcggcagtctcgccatcagtttggatttgac
aaagatgtatttggtccgagattcatcaagaacctaacagcaactttccagtgtttgtat
ctctgtccaacagaagataagagtaagattgttcgggtattaaacttgtggcaaaaaaat
ggagtatttaaaattgagatcattcaaccattactggatatggcagcggatgctgcacct
gcagaattattggctgatagttctgctaatgaagaaggtgcttctccccctcctccaaca
ttgcctttggatcctccagaagaggcccctagctctgtacctgccgtgtctgttcctcag
ttacccaatccagatgcatttgctgctgtagctcagttgtttcaaagcagccaagggcaa
cagcttcagcagattctacagactttccagcagcccccaaaaccacagtctccagttata
gatgaaaatgtttatgctcaggtaccaactactgctcctcaaatgaatccaatgtcacat
cagtctgagaggaaaactgcttttgacaagttacttgacagatttgattatgatgatgag
cctgaagcagctgatgagacaaagaaagaggcttcaagcccctctgcttcccctcctcag
ccgcctttccagttccccggagaggctatgcagccccatccatcattttcgcaaatccca
gggcaaatgccaaacatggatcagtttcaagcaattcagccacggatgattggtatgccc
caggagcctctacttagtcaaaatccagtcccaccaactggacaaatgcttggatttgga
atgcttgcacctcagacttaccctaccatggttccacctgtagtttcccaggcatcacct
cagccatttctcccagcttctttttcagcacaacagaatgatgtacagatggcgaaagag
tctcaacaggatgttcctatggatgtagaagaacagagtgtccaagaatccaaacgacag
atgacagatcgtcagaagtctgcatcaagatcaccaaaaaggaggcgatccaggtccggt
tcacgttcacgccgttctagacatagacgctcgcgttctcgatctcgtgacagacgccgc
cactccccaaaatcgcgttcccaagaaaagcgtgaccgtgaaaaggaacgggagcgtaga
atgaagggacttccctctattaaatctgaggccgttagtgtttgcagtactacactatgg
gttggacagctggacaaaagaactactcagcaagatgttggtagcctcttggaagaattc
ggacctattgaatcaatcaatatgatcccaccacgaggctgcgcttacattgttatggta
aacaggttggatgcatatcgtgctttacagaaactgagcagaggaagtttcaaagttaac
caaaaggcgattaagattgcatgggcattgaacaaaggaattaaagcagagtttaagcag
tattgggatgttgaaataggggtcacgtacataccatggagtaaagtcaaacctgaggat
cttgaggcactttgtgaaggaggaatgttagacaatgatactctttgtccagactggaaa
cccattattaaaaaggcagagagtaaagaggcatctcaaaatggggcaactgacagtgca
caggctgaaaatatcccatctgtacctccacctgtccctatgctgtctgtaccgattcgg
caaccaatgccagcagtgccaggtcttcagccattgccatctgttccacccctttcagca
ttacctacagttcaaggtcttcaacctagtgtgactttaacttctattcaaggtttacca
cctccacaaggtttgcctccaccccaaggggttcctcccctgcaagggttacctattcca
ccatcattgccaccattacaaggaatgcctatgcctcaaggaatgcatgtcccaggattc
ccagggcctataaacatacctccccctgggtttgctccaggtgtccccccaccaccattt
atgaggccaggatttaatccaatgcagatgccaccagggtttttacctcctccggggatg
ccccctcccatgactcctcctgtatctcttcctccacccatgtctggattaggcatacca
acttctgcagcaggtgcttgtgcttcatcaaatgaccccgatgtgtcacaaggaaatact
ttgtctcttggttctggaagagaaaatattgactctgatgatgatggaaaaggatttggg
ccacctccacaaggagggccaaataatgttcctgggccaatgaacccacatcatggtgct
tcgcagggcggagctccccaggtacctcagacaggtgctacaccaggctcatcccagggt
cctcctggcccacctcaaggtcctcctggcccacctcaaggtcctcctggcccacctcaa
gggcctcctggcccacctcaagggcctcctggcccacatcaagggcctcctnggccacat
caagggcctcctggcgcacatcaagggcctcctggcgcacatcaagggcctcctggccca
catcaagggcctcctggcccacatcaagggcctcctggcgcacatcaagggcctcctggc
gcacatcaagggcctcctggcgcacatcaagggcctccaaactcatcccatggtccacct
caaggccctccacaaactacttcaggttcatcacatggactatcccacggtcctccaatt
cagtctggtccatcccaaggtccctcaacaggaacaccaccagggcctttaattggattg
cagagtccatctactggtcttctaggagcaagaccagggcttatacccctgcaaagacca
cctggagtacccacccctcacatgcaaagatttcctggaatgccacatagaccaatgctg
cctcacttggcacacagaggtcctcctcctgggccaggtggttatggaatgccgccacca
catggcatgagaggtccttatccacctcagggccactttggaaggcagggaggacatggg
ggaccagaagaaggcaggccatttaggaatgagaggcgtggatttaatcctgacagacat
gggtttaatagtgatagaggtgataggcatggatttaatcctgatagaaatgaaagaatg
aggtttaatccagaggcagatgatgaatttaatcctgagatggatgaggggcctgagttt
aatccagagatggatgagggcgaagcattcaccatggacgaggaagaggagcaaggattc
aagccagacagaccagggttcaaccccgataggcagaatttccgccctgacaggccaggt
tttcatcctgaacgacagggctttaattcagaaagaccaggcttccatccagagagaaat
gatcgtcaaggatttgttcctgatagagagaggtttggtaggaggtcatttgggaaccgc
aatgaggatgagcgggaacactttggtagcagatttgatgatcgggatcacgagcgacca
gggcgtggtagaagaccctggggcaggggaagtcctgaccatgatagacagagggagact
gaggagagaaataggtggccagtaggacgagaaagggagcccagaagagtacttctggat
ttccctgacagtggtagaaagcaaattttgaatgaaaaccatgatcctccaaagggtaaa
gctgaaaatccagataaagagaaagctgaatctaaagagcaaaaacctgctgaggagaag
gcctctaaaatgtcaccatcttctgacccagcaaaaaaggaatctggatctacataa
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