Borreliella garinii NMJW1: BgCN_0394
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Entry
BgCN_0394 CDS
T02299
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bgn
Borreliella garinii NMJW1
Pathway
bgn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bgn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BgCN_0394
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bgn03021
]
BgCN_0394
03400 DNA repair and recombination proteins [BR:
bgn03400
]
BgCN_0394
Enzymes [BR:
bgn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BgCN_0394
Transcription machinery [BR:
bgn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BgCN_0394
DNA repair and recombination proteins [BR:
bgn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BgCN_0394
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Biotin_lipoyl_2
Motif
Other DBs
NCBI-GeneID:
13812597
NCBI-ProteinID:
AFT83716
LinkDB
All DBs
Position
complement(398473..402606)
Genome browser
AA seq
1377 aa
AA seq
DB search
MKEIKDFEKIKIKIASPDQIRNWSYGEVKKSETINYRTLRPEKDGLFCERIFGTTKEWEC
YCGKFKSIRYKGIICDRCNVEVTHFKVRRERMGHIELAAPVAHIWYYKYIPSRIGLLLDI
TASSLNSILYYEKYVVIEPGDTDLKKMQLLNEDEYIEARERYGMSFNASMGAEAIKTLLE
NLDLDELSSKLRIQMIDKDDKTDKKLLRRLEIIENFKISGNKPEWMIMEVLPVIPPEIRP
MVQLDGGRFATSDLNDLYRRVINRNNRLRKLLLLNAPEIIVRNEKRMLQESVDSLFDNSH
KRKVVKGSSSRPLKSLSDALKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKLHQCGLPAK
MALELFKPFVIRRLIESEAVFNIKRAKNLIEQEVDEVWQILDLVIKEHPILLNRAPTLHR
LGIQAFEPVLVEGKAIKLHPLVCHAYNADFDGDQMAVHVPLTPSAQAESWALMLSTNNLL
NPANGHPIVFPSQDIVLGLYYLTMEKKNIVGEGKKFLNFSNVILAINNRSLDYNASIYVK
IDGEYKKTTAGRVIFNEALPKGIEFVNKTLSDLELQILISKVYVVHGSSTVIEMLDIIKE
LGFKYATKFGCTISMSDIIVPDEKKTYIDRANKEIAKIQNDYAKGVITGEERYNNVVSVW
LKTNEELTNKMMEILKKDRDGFNVIYMMADSGARGSRNQIRQLAGMRGLMAKTSGDIIEL
PIISNFKEGLSVIEFFISTNGARKGLADTALKTADAGYLTRRLVDIAQDVVVRIEDCGTI
NGIKVETVKNGEEILESLKEKAVGSYSIERIKNPITGEIVLDANEEISEAKIELLEKIGI
EKLVIRSVLTCEAEHGVCQKCYGRDFSKNKPVNIGEAVGIIAAQSIGQPGTQLTMRTFHI
GGVAQAGSEDDKISLKNAFILNSIEGFNVNVDNGILFTRKGTLKIINVFYEEKIKNIKEI
KVLDSQRVIKGIPLFVNKKGVEILSSYIGYAKLRDDKFLIVSEEQEVALKAGTKLEIGVG
DYVESGKVIGTFDPFAEPIIAEVKGKIKFKDIILGTTLKEEINTETGNVEKRITDNVFES
LDPRIFIIDSSGMEVASYVLPGDAYLQVEDGQNINIGDVIAKLSKGSEKTQDITGGLPRV
NDLFETRIPKNLTEMAKVSGIVQFKSIQKGKRLINILDEYGVEHKHYIPAGKHLLVRDGD
VVKAGDMLCDGRINPHDVLEILGGISLQEFLLAEIQDVYRKQGVSINDKHIGVIIKQMMK
KVKIVAVGDTNFVYGQKVDKHTFYEQNRKVIEQGGEPAIASPILIGVTKTSLNIDSFISA
ASFQETTKVLTDASIAGKIDDLRGLKENVVIGHLIPTGTGMGLYKKIKVSENIDAKV
NT seq
4134 nt
NT seq
+upstream
nt +downstream
nt
atgaaagagataaaagattttgaaaaaataaaaattaaaatagcatctcctgatcaaatt
agaaattggtcttatggagaggttaaaaagtccgagactattaattatcgaactttgaga
cccgagaaggatgggcttttttgtgaaaggatttttggcactacaaaggaatgggaatgt
tattgtggtaaatttaaatcaattagatataaaggtattatttgtgatcgttgtaatgta
gaagttacccattttaaggtgagacgtgaaagaatggggcatattgagctagcagctcca
gttgcccatatttggtattacaaatatataccctctaggattggtcttttgcttgacatt
acagcatctagtttaaattctattctttattatgaaaaatatgtagtaattgaaccgggt
gatactgatcttaaaaaaatgcaacttttaaatgaagatgagtatatagaggctagagag
cgatatggaatgtcttttaatgcttcgatgggagctgaagctattaaaactcttcttgaa
aatcttgatcttgatgaactttcgtctaagcttaggattcaaatgatagataaagatgat
aaaactgataagaaacttttaagacgtcttgaaattattgaaaattttaaaatttctgga
aataagccagaatggatgattatggaggttcttcctgttattcctccagagattaggcca
atggttcagcttgatggagggcgatttgcaacatctgatcttaatgatctttacagaaga
gttataaataggaataatcgtttaaggaagttacttcttcttaatgcgccagagattatt
gtgagaaatgaaaaaagaatgcttcaagaatcggtagattctctttttgataattctcat
aaaagaaaggttgtcaaaggctcatctagtagacctcttaagtcgctttctgatgcttta
aaaggcaagcagggaaggtttaggcaaaatcttcttgggaaaagagtagattattctggt
cgttctgttattgttgttggacctgagttaaagctgcatcaatgtggactgcccgcaaaa
atggctcttgagctgtttaagccttttgtgataagaaggttaattgagagtgaggctgtt
tttaatatcaaaagagcaaagaatttaatcgaacaagaagtggatgaggtatggcaaatt
ttagatcttgttataaaagagcatcctattcttttaaatagggcgcctactcttcataga
cttggaattcaagcttttgagcctgtgttagttgagggtaaggcaataaaattacatcct
cttgtttgtcatgcatataatgctgattttgatggtgatcaaatggcagtgcatgtgccc
cttactccatcagcacaagctgaaagttgggctttaatgctttcaacaaacaatctttta
aatcctgcaaatgggcatcctattgtttttccatctcaagatattgttttaggtctgtat
tatttgacgatggaaaaaaagaatattgttggagaaggtaaaaagtttttaaactttagc
aacgttattctcgctataaataatagaagtctagattacaatgcttctatttatgtaaaa
attgatggcgaatacaaaaaaactacagccggtagggttatatttaacgaggctttgccc
aaaggaattgaatttgtaaataaaactcttagtgatttggaactacaaattttaatatca
aaagtttatgtagttcatggttcttctactgtaattgaaatgcttgacattatcaaggag
cttggctttaagtatgccactaagtttgggtgcacaattagtatgagcgatattattgtt
cctgatgaaaagaaaacttatatagacagggctaataaagagattgctaaaattcaaaat
gattatgccaaaggtgttattactggtgaagagcgctataataatgtagtttctgtttgg
ttaaagactaacgaagaacttactaataagatgatggaaattttaaagaaagacagagat
ggatttaatgttatatatatgatggcagattctggtgctagaggtagtagaaatcaaata
agacaacttgctggcatgagaggattaatggcaaaaacttctggggatattattgagctt
ccaattatttctaactttaaagaaggtctttctgtgatagagttttttatatctacaaat
ggagctagaaaaggtctagcagatactgctcttaagacagccgatgctggatatttaact
agaagattagtagacattgctcaagatgttgttgttagaatagaagattgtggaaccata
aatggaataaaagttgaaactgtcaaaaatggtgaagaaatattagaatctttaaaagaa
aaagctgttgggagttattccattgaaagaataaaaaatccaattactggtgagatcgtt
ttagatgcaaatgaagaaatctcagaagccaaaatagaattattagagaaaattggtatt
gaaaagcttgtgattagatctgttttaacatgtgaagctgagcatggtgtttgtcaaaaa
tgttatggtagagacttctcaaagaataagcctgtcaatattggcgaggctgtaggaata
attgctgctcagtctataggtcaaccaggaactcaattaaccatgagaacttttcatatt
ggtggagttgctcaggccggcagtgaggatgataaaatatctttaaagaatgcttttata
cttaatagcatagagggttttaatgttaatgttgacaatggaattcttttcacaagaaaa
ggaactttaaaaataatcaatgttttttatgaggaaaaaattaagaacataaaagagatt
aaagttttagattctcaaagagtaatcaaaggaattcctttgtttgttaataaaaagggt
gtagagattctctcttcttatattggttatgctaaattaagagacgataaatttttaata
gtatcagaagagcaagaagttgctttaaaagctggcacaaagcttgaaataggggttggt
gattatgttgaatcaggtaaagttatcggcacatttgatccatttgcagagcctattatt
gcagaagttaaaggtaaaattaaatttaaggatattattttaggaaccactcttaaagaa
gagattaatactgaaacaggaaatgttgagaaaagaattacagataatgtttttgaatct
cttgatcctaggatttttattattgatagtagtggtatggaggttgcatcttatgtatta
ccaggagatgcttatcttcaagttgaagatggtcaaaatattaatataggagatgttatt
gctaaactttctaaaggctctgaaaaaactcaagatattacagggggattgccccgtgtt
aatgatctttttgaaacaagaatccctaagaatttaaccgaaatggctaaagtaagtgga
attgtgcaatttaaatcaattcaaaaaggcaaaaggcttattaatattttagatgagtat
ggggttgaacataagcattatattccagccggtaagcatcttttagttagagatggagat
gttgttaaagcgggcgatatgctttgtgatggcagaattaatcctcatgatgtgcttgaa
attttaggcgggattagtttgcaagagtttctgttggcagaaattcaggatgtttatcga
aagcagggcgttagcattaatgacaaacatattggtgtgataattaaacaaatgatgaaa
aaagttaagattgtagcagttggtgataccaattttgtttatggacaaaaggtagataag
catactttttatgagcaaaatagaaaagtaatcgagcaaggtggtgagccagcaatagca
agtcctattcttataggagtaactaagacgtctctcaatatagattcttttatttctgca
gcttctttccaggaaacaacgaaagtattaacagatgcttctattgctgggaaaatagat
gatcttaggggattgaaggaaaatgttgtaattgggcatttaattcctactggaaccggt
atgggactttataaaaaaattaaagttagtgaaaatatcgatgctaaggtttaa
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