Brachybacterium halotolerans subsp. kimchii: Bra3105_15845
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Entry
Bra3105_15845 CDS
T08518
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
bhh
Brachybacterium halotolerans subsp. kimchii
Pathway
bhh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bhh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Bra3105_15845 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bhh03021
]
Bra3105_15845 (rpoB)
03400 DNA repair and recombination proteins [BR:
bhh03400
]
Bra3105_15845 (rpoB)
Enzymes [BR:
bhh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Bra3105_15845 (rpoB)
Transcription machinery [BR:
bhh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Bra3105_15845 (rpoB)
DNA repair and recombination proteins [BR:
bhh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Bra3105_15845 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_45
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
UEJ82291
LinkDB
All DBs
Position
3543637..3547125
Genome browser
AA seq
1162 aa
AA seq
DB search
MAASSTDRTPDIALRTASPRVTFAKLGDPLQVPDLLSLQTTSFDWLLGNERWQERAAEAA
SAGREDVPQTSGLSDIFEEISPIEDFAGNMALSFRDHTFDDPKYTVEECKEKDLTYSAPL
YVIAEFMNNETGEIKTQTVFMGDFPLMTDKGTFIINGTERVVVSQLVRSPGVYFDESVDK
TSDKHIFGAKMIPSRGAWLEFEVDKRDQVGVRIDRKRKQSVTTLLQALGMSQSEILDEFG
EFESMRSTLEKDRTTSQDEALLDIYRKQRPGEPPTRDAGEAMLNNLYFNDKRYDLAKVGR
YKIGKKLGVEAPLSQSTLTLEDIVATIKYLVTLHDGLAETTSADGKTLRVETDDIDHFGN
RRIRAVGELIQNQVRTGLSRMERVVRERMTTQDVEAITPLTLINIRPVTAAIKEFFGTSQ
LSQFMDQNNPLSGLTHKRRLSALGPGGLSRDRAGMEVRDVHPSHYGRMCPIETPEGPNIG
LIGSLATFARINPFGFVETPYRKVTKGEVTDEIVYLTADDEDRHVIAQANAPLNEDGTFV
EETVLSRLTGGEPELVPADEVDYMDVSARQMVSVATAMIPFLEHDDANRALMGSNMQRQA
VPLMRTEMPLVGTGMERRAAVDAGDVIVAEKPGVIEDLSADLISVMADDGTRQTYPIGKF
DRSNAGNCYNHRVLWNEGDRVEAGSVLADGPSTEEGELALGKNLLVAFMSWEGHNYEDGI
ILSSRMVQDDVLTSIHIEEHEVDARDTKLGREEITRDIPNVGDDVLADLDERGIIRIGAE
VEAGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLRVPHGESGTVIGVRVFTE
EDESEILPTGVNEMVRVYVAQKRKITDGDKLSGRHGNKGVIAKILPVEDMPFLEDGTPVD
IILNPMGVPGRMNIGQVMEVHLGWVAKNGWSLDPKSDAAKDLPDAALTGEPGTPVAVPVF
DGLSGTELEGLIANHTPNRDGERMVKEDGKAQLFDGRSGEPFPKPISVGYMYILKLHHLV
DDKLHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWAMEAYGAAYALQELLTIKSDDIP
GRVKVYESIVKGENVPEPGIPESFRVLLKEMQSLCLNVEVLSSDGTAQEVQENDEEVFRA
AEELGIDLSRRPHEGVGSIEEV
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
ttggctgcctcgagcaccgatcgaacccctgacatcgccctgcgcacggcgtcgccgcgc
gtcaccttcgccaagctcggcgatccgctccaggtccccgacctgctgagcctccagacc
acctccttcgactggctgctcggcaacgagcgctggcaggagcgcgccgccgaggcggcg
tcagcgggacgcgaggacgtcccgcagacctccggtctgtccgacatcttcgaggagatc
tccccgatcgaggacttcgccggcaacatggcgctgtccttccgcgaccacaccttcgac
gacccgaagtacacggtcgaggagtgcaaggagaaggacctcacctactccgctccgctg
tacgtgatcgccgagttcatgaacaacgagaccggcgagatcaagacccagacggtcttc
atgggtgacttcccgctcatgaccgacaagggcaccttcatcatcaacggcaccgagcgc
gtggtcgtctcgcagctcgtgcgctcgcccggcgtctacttcgacgagagcgtcgacaag
accagcgacaagcacatcttcggcgcgaagatgatcccctcgcgcggcgcctggctcgag
ttcgaggtcgacaagcgagatcaggtcggcgtgcgcatcgaccgcaagcgcaagcagtcc
gtgacgacgctgctgcaggcgctcggcatgtcccagagcgagatcctcgacgagttcggc
gagttcgagtccatgcgctcgaccctcgagaaggaccgcacgacctcgcaggatgaggcc
ctgctggacatctaccgcaagcagcgcccgggcgagccgcccacgcgcgacgccggcgag
gcgatgctcaacaacctctacttcaacgacaagcgctacgacctcgcgaaggtcggccgc
tacaagatcggcaagaagctcggcgtcgaggccccgctctcgcagtccacactgaccctc
gaggacatcgtcgcgaccatcaagtacctggtgacgctgcacgacggcctcgccgagacc
acgagcgccgacggcaagaccctccgggtcgagaccgacgacatcgaccacttcggcaac
cgtcgcatccgcgcggtgggcgagctgatccagaaccaggtccgcaccggcctctcgcgc
atggagcgcgtcgtgcgcgagcgcatgaccacgcaggacgtcgaggcgatcaccccgctg
accctgatcaacatccgcccggtgacggcggcgatcaaggagttcttcggcacctcgcag
ctctcgcagttcatggaccagaacaacccgctgtcgggcctgacccacaagcgccgtctc
tcggcgctgggcccgggcggcctctcgcgcgaccgcgcgggcatggaggtccgcgacgtc
cacccgagccactacggccgcatgtgcccgatcgagacccctgagggcccgaacatcggc
ctcatcggctcgctcgcgaccttcgcgcgcatcaacccgttcggcttcgtcgagaccccg
taccgcaaggtcacgaagggcgaggtcaccgacgagatcgtctacctgacggccgacgac
gaggaccgccacgtcatcgcgcaggccaacgccccgctgaacgaggacggcaccttcgtc
gaggagaccgtgctctcgcgcctcaccggcggcgagcccgagctcgtccccgccgacgag
gtggactacatggacgtctcggcccgccagatggtgtcggtcgcgaccgccatgatcccg
ttcctcgagcacgacgacgcgaaccgcgccctcatgggctcgaacatgcagcgccaggcc
gtgccgctcatgcgcacggagatgccgctggtcggcaccggcatggagcgtcgcgccgcg
gtcgacgcgggcgatgtgatcgtcgccgagaagcccggtgtgatcgaggacctctcggcc
gacctcatctcggtcatggccgacgacggcacccgtcagacctacccgatcgggaagttc
gaccgctccaacgcgggcaactgctacaaccaccgcgtgctgtggaacgagggcgaccgc
gtcgaggccggctcggtcctggccgacggcccgtcgacggaggagggcgagctcgcgctc
ggcaagaacctcctggtcgcgttcatgtcgtgggagggccacaactacgaggacggcatc
atcctgtcctcgcgcatggtccaggacgacgtcctcacctcgatccacatcgaggagcac
gaggtcgacgcccgcgacaccaagctcggccgcgaggagatcacccgcgacatccccaac
gtcggcgacgacgtcctggcggacctcgacgagcgcggcatcatccgcatcggcgccgag
gtcgaggccggggacatcctggtcggcaaggtgaccccgaagggcgagaccgagctgacc
cccgaggagcgcctgctgcgcgcgatcttcggcgagaaggcccgcgaggtgcgcgatacc
tcgctgcgcgtcccccacggcgagtccggcaccgtcatcggcgtccgggtgttcaccgag
gaggacgagtccgagatcctgcccaccggcgtcaacgagatggtccgcgtgtacgtggcc
cagaagcgcaagatcaccgacggcgacaagctctccggccgccacggcaacaagggcgtc
atcgccaagatcctgcccgtggaggacatgcccttcctcgaggacggcaccccggtcgac
atcatcctcaacccgatgggcgtgcccggtcgcatgaacatcggccaggtgatggaggtc
cacctggggtgggtcgcgaagaacggctggtcgctggacccgaagtccgacgccgccaag
gacctgcccgacgcggcgctgaccggcgagccgggcacccccgtcgccgtgccggtgttc
gacggcctgtccggcaccgagctcgagggcctgatcgcgaaccacaccccgaaccgggac
ggcgagcggatggtcaaggaggacggcaaggcgcagctgttcgacggccgctccggcgag
ccgttcccgaagccgatctccgtgggctacatgtacatcctgaagctccaccacctggtc
gacgacaagctgcacgcccgttcgaccggcccctactcgatgatcacgcagcagccgctg
ggcggtaaggcccagttcggcggccagcgcttcggcgagatggaggtctgggcgatggag
gcgtacggcgccgcctacgccctccaggagctcctgaccatcaagtcggacgacatcccc
ggccgtgtgaaggtctacgagtccatcgtcaagggcgagaacgtccccgagccgggcatc
ccggagtccttccgcgtgctcctcaaggagatgcagtccctgtgcctgaacgtggaggtg
ctgtccagcgacggcaccgcccaggaggtgcaggagaacgacgaggaggtgttccgggcc
gcggaggagctcggcatcgacctgtcccgccgtccccacgagggcgtcggctccatcgaa
gaggtctga
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integrated database retrieval system
