Borrelia hermsii CC1: L283_01890
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Entry
L283_01890 CDS
T03871
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
bhi
Borrelia hermsii CC1
Pathway
bhi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bhi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
L283_01890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bhi03021
]
L283_01890
03400 DNA repair and recombination proteins [BR:
bhi03400
]
L283_01890
Enzymes [BR:
bhi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
L283_01890
Transcription machinery [BR:
bhi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
L283_01890
DNA repair and recombination proteins [BR:
bhi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
L283_01890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
AJW73196
LinkDB
All DBs
Position
complement(403349..406816)
Genome browser
AA seq
1155 aa
AA seq
DB search
MIKRVHLGQGKAEEILDLPNLIEIQLNSYEKFLQLERLKTNRPLLNEGLESVFRDVFPMK
SSNGEVALEYEKYYIEYNSLSFTEKECKRKGQSYEAVLKIRLNLQFLTTGEIRQKDVYMG
TIPLMTDRGTFIVNGAERVIVSQIHRSPGVVFYKEKDLYYARIIPYRGSWLEFEIDSKKD
YLYVKIDRKKRILVTLFLRALGLNTRERIIETFYKIRKIEVNEDTKREITGQYLATNIII
KENMTYRAGDKITLQDIEDFLQNGVKEIDLIDFDGYDSVPGKHFISSDVILNCFEKEDAY
FSLKDGFKELSRESVMLAVYSVLLPGEPISIDNAESDLRNVFFSEKRYDLGHVGRYKLSK
KFGLDDLTTSVLTMTDIVNTISHLLRIYDGHDVLDDIDHLGNRRVRSVGELLTNIYKGAM
SRVEKIAKDRMSNKEVFNLKPQELISVKPIVSAVKEFFATSQLSQFMDQVNPLAELTHKR
RLNALGPGGLSRDRAGFEVRDVHYTHYGRMCPIETPEGPNIGLIVSLATYAKVNDYGFLE
TPYRKVVDGKVTDEIEYLSAIDEEKKCIAQANAAVNAEGNYIDDLISVRVSGDYTTMIPK
NIDYMDVSPRQLISVSSALIPFLEHNDANRALMGSNMQRQAVPLLFPQPPIVGTGMERIV
AKDSGVVVKAKRSGIVVLATSKKIVIRPEDAADDHDLDEYELAKYERTNQDTSFNHSVLV
KEGQVVNKGEIIADGPATRYGEVALGNNLLVGFIPWNGFNYEDAILISERIIKEDLYTSI
HIKEFSIEVRETKLGPEKVTADIPNVSGKILNKLDENGIVRIGTYVKPGDILIGKVTPKS
EGDITPEFKLLTSIFGEKAKDVKNNSLKVPHGTEGTVIDVQRITKDDVSNLPPGVDEILK
VYIAKKRKLKEGDKMAGRHGNKGVVAKILPVEDMPYLADGTPLDICLNPLGVPSRMNIGQ
LMESQLGLAGKYLGEYYDVPVFESATNECIQEKLKKAGFNETSKAVLYDGYTGEPFENEV
MVGIIYMLKLHHLVDDKMHARSTGPYSLVSQQPLGGKAQFGGQRLGEMEVWALEAYGAAH
TLQELLTVKSDDMSGRVKIYENIVKGIPTNVSGIPESFNVLMQELRGLGFDLSIYDDKGN
QIPLTEKEEELINKT
NT seq
3468 nt
NT seq
+upstream
nt +downstream
nt
atgataaaaagggttcatctaggacaaggaaaagccgaagaaattttagacttacctaac
ctaatagaaatacaattgaattcttatgagaaatttttgcagcttgagagattaaaaacg
aatagacctttgcttaatgaaggccttgaatctgtttttagggatgtttttcctatgaaa
agtagcaatggtgaggttgcgcttgaatatgagaaatactatattgaatataattctctt
agttttactgaaaaagaatgcaaaagaaagggccaaagttatgaagctgttttaaaaata
agattaaatttgcagtttctaacaacaggagagataaggcaaaaggatgtctatatgggg
actattcctttaatgactgatagagggacttttattgttaatggtgctgagagagtaatt
gtatcacagattcatagatcccctggggttgttttttacaaggaaaaagacttatattat
gctcgtattattccttatcgtggttcttggctagaatttgagatagactcaaaaaaagat
tacctttatgttaagatagacagaaaaaaaagaatacttgttactcttttcttaagagct
ttaggtcttaatactagagagagaataattgaaactttttataagattagaaaaattgag
gtcaatgaagatactaaaagagaaattacaggacaatatttagcaacaaatattattata
aaagaaaatatgacttatcgtgcaggtgataagataactttgcaagatattgaagatttc
ttgcaaaatggagtaaaagagatagaccttattgattttgatggatatgatagtgttcct
ggaaaacattttattagttccgatgttattttaaattgtttcgagaaagaagatgcttat
ttttctctaaaagatggctttaaagagctttcaagagaatctgtaatgcttgcggtttat
agtgtgcttttacctggcgagccaatatccattgataatgctgagagtgatttaagaaat
gtgtttttttcagagaagagatatgatctaggtcatgtaggtcgatataagctttctaaa
aagtttggtcttgatgacttaacgacttcagttcttactatgacagatatagtaaatacg
atatctcatcttttaagaatatatgatggtcatgatgttcttgatgatattgatcatctt
ggaaatagaagagttcgttctgttggtgagttgcttacaaatatatataaaggtgcaatg
tcaagagtagagaaaattgcaaaagatagaatgtctaataaagaggtgtttaatcttaag
cctcaagaattaataagtgttaaacctattgtttctgctgttaaagaattttttgcaact
agtcagctttcacaatttatggatcaagttaatcctttagctgaattgactcataagagg
cgtcttaatgctttgggtcctggggggctctcaagagatcgtgcaggttttgaagtaaga
gatgtgcattatacccattatggtagaatgtgtcctattgagactcctgagggaccaaat
attggtcttattgtgtctttagctacttatgcaaaggtaaatgattatggtttcttagag
actccttatagaaaggtggttgacggcaaggttactgatgagatcgagtacttgtctgca
attgatgaggaaaaaaaatgtattgctcaggcaaatgctgctgttaatgcagagggtaat
tatattgatgatttgatttccgttagagtttctggtgattatactacgatgattcctaag
aatatcgattatatggatgtttcacctagacagttaatttctgtttcttcagcattaata
ccttttcttgagcataatgatgcaaaccgtgctcttatgggttcaaatatgcaacgtcaa
gcagttcctttgttatttccacaaccacctattgttggtactggtatggagagaatagtc
gcaaaggattctggtgttgttgttaaggcaaaaaggtcaggtatagtcgtattggcaacg
agcaagaaaatagttataagacctgaggatgcggctgatgatcatgatttagatgaatat
gaacttgctaaatatgagaggacaaatcaggatacttcttttaatcattcggttttagtt
aaagagggtcaagtagttaataagggcgagataatagctgatggtcctgctactagatat
ggagaagtggcacttggtaataatctgctggttggttttattccttggaatggatttaat
tatgaagatgctatcttaatttctgagaggattataaaggaagatctttatacttcaatt
catattaaagaatttagtattgaggtaagggaaactaagcttgggcctgagaaagttaca
gctgatattcccaatgttagtgggaagatattaaataagcttgatgagaatggaattgta
cgaataggaacttatgtaaagccgggtgatatcttaattggtaaggttacgccaaaatca
gaaggagacattactcctgaatttaagcttttaacgtctatttttggtgagaaggcaaaa
gatgttaagaataattcacttaaagtaccacatggtactgaaggtactgtaattgatgtt
caaagaattactaaggatgatgttagcaatcttccacctggtgttgatgagatattgaag
gtttatattgccaagaaaaggaaacttaaagagggtgataaaatggcagggagacatggg
aataagggtgtagttgcaaagattcttcctgttgaagatatgccatatcttgcagatgga
actcctcttgatatatgtttaaatcccttaggagtgccgtctcgtatgaatattgggcaa
ttaatggagtctcagcttggtcttgctggtaaatatcttggcgaatattatgatgttcct
gtgtttgaatctgctacaaatgaatgcattcaggaaaaattaaagaaagccggatttaat
gaaacgtcaaaagcagtcttatatgatggatatacaggagaaccatttgagaatgaggta
atggttggaattatatatatgcttaagctgcatcaccttgttgatgataagatgcatgca
aggtctacagggccttattcacttgtgtctcagcaacctcttggaggaaaggcacaattt
ggtggtcaaagacttggagagatggaagtctgggcacttgaggcttatggagctgctcat
actcttcaagagctcttaacagtgaaatcagatgatatgtcaggtagagttaagatatat
gagaatatagttaaaggtattcctactaatgtatctggaattcctgaatctttcaatgtt
ttgatgcaggagctaagaggtcttggttttgatttatcaatttatgatgataagggcaat
caaattcctttaacagaaaaggaagaggaattaattaataaaacttag
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integrated database retrieval system
