Bartonella henselae BM1374163: PRJBM_00622
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Entry
PRJBM_00622 CDS
T03068
Symbol
rpoB_1
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
bhn
Bartonella henselae BM1374163
Pathway
bhn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bhn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PRJBM_00622 (rpoB_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bhn03021
]
PRJBM_00622 (rpoB_1)
03400 DNA repair and recombination proteins [BR:
bhn03400
]
PRJBM_00622 (rpoB_1)
Enzymes [BR:
bhn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PRJBM_00622 (rpoB_1)
Transcription machinery [BR:
bhn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PRJBM_00622 (rpoB_1)
DNA repair and recombination proteins [BR:
bhn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PRJBM_00622 (rpoB_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
CDO40008
UniProt:
X5M393
LinkDB
All DBs
Position
708464..712615
Genome browser
AA seq
1383 aa
AA seq
DB search
MAQTLAMTSQFNGRKRVRKFFGKIPEVAEMPNLIEVQKASYDQFLMIEEPKGGRPDEGLQ
AVFKSVFPISDFSGTAMLEFVGYQFDSPKFDVEECRQRDLTYAAPLKVILRLIVFDVDED
TGSKDIKDIKEQGVYMGDMPLMTTNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKSHSSG
KFLFAARVIPYRGSWLDIEFDAKDIIYARIDRRRKIPVTSLLMALGMDASDILSTFYNKV
TYERDGDGWRIPYSVDRFKGMKLVSDLIDADSGEVVAEAGKKLTVRAAKALAEKGLKAVK
VSEDDLLGSYLAEDIVNYQTGEIYLEAGDEIDEKTLRVLFDVNADQIDILDIDHMNIGAY
IRNTLKVDKNESRQDALFDIYRVMRPGEPPTMDTAEAMFHSLFFDPERYDLSAVGRVKMN
LRMDLDCPDTVRVLRQEDILAVVKMLVELRDGRGEIDDIDNLGNRRVRSVGELMENQYRI
GLLRMERAIKERMSSVEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITH
KRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGF
IESPYRKIIDGKVTTEVIYLSAMEESKHYVAQANSSLDAEGRLSEEFVVCRHAGEVLMAP
RDHVDLMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMES
IVARDSGAAVAARRSGIVDQVDATRIVIRATEDLDPSKSGVDIYRLQKFQRSNQSTCINQ
RPLVHVGDRVEKGNIIADGPSTDLGDLALGRNVLVAFMPWNGYNYEDSILLSERIVADDV
FTSIHIEEFEVAARDTKLGPEEITRDIPNVAEEALRNLDEAGIIYIGAEVQPGDILVGKI
TPKGESPMTPEEKLLRAIFGEKASDVRDTSMRMPPGAFGTVVEVRVFNRHGVEKDERAMA
IEREEIERLAKDRDDEQSILDRNVYARLTDMLVGKVAVEGPKGFSKNKKLDTTIMGHYPR
SQWWQFTVEDEKLQNEIEALRNQYDESKEALQRRFMDKVEKVQRGDEMPPGVMKMVKVFV
AVKRKIQPGDKMAGRHGNKGVVSRILPIEDMPFLEDGTHADIVLNPLGVPSRMNVGQILE
THLGWACAGMGKKIGDLVDLYQETGDILPLRQRIENLMPDDDHNEPVRQYDNESLYKLAL
QMRKGVSIATPVFDGAHEADINMMLEDAGLDSSGQVTLYDGRTGEPFDRPVTVGYIYMLK
LHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVK
SDDVAGRTKVYEAIVRGDDTFEAGIPESFNVLVKEMRSLALNVELDDARELIAQRALSDT
TEQ
NT seq
4152 nt
NT seq
+upstream
nt +downstream
nt
atggctcagaccctagcaatgacgtctcaattcaatggtcgtaagcgcgtacgcaagttt
tttggtaagattcctgaagtggcagaaatgccaaatcttattgaggttcaaaaagcatca
tatgatcagtttctcatgattgaggaaccgaaaggcgggcgtccagatgaaggcttgcag
gctgtttttaaatcggtatttcctatttcggatttttccggtacagctatgctcgagttt
gttggttatcaatttgattcaccaaaatttgacgttgaagaatgtcgtcaacgtgatttg
acttatgctgcaccattaaaggtgatattgcgtttaatcgtttttgatgttgatgaagat
acaggttcgaaagatatcaaggatattaaagagcaaggcgtttatatgggcgatatgcct
ttaatgacgacgaatggtacctttattgttaatggaacggagcgtgttattgtttcacaa
atgcatcgttctccaggtgtcttttttgaccatgataaaggaaaatcacattcatcagga
aagtttctttttgctgctcgtgttattccttatcgcggttcttggctagatattgaattt
gatgctaaggacatcatttatgctcgtattgatcggcggcgcaaaattcctgttacaagt
cttttgatggcattagggatggatgcatcagatattttgtcgactttttataataaagtt
acctatgagcgagatggggatggatggcgtattccttattctgttgatcgctttaaaggc
atgaagcttgtttctgatcttatagatgccgacagtggtgaagttgttgcagaagctggt
aaaaaactaacggttcgtgcagcgaaggctttagcagaaaaaggtctaaaggcagttaaa
gtcagtgaagacgatttattaggatcctatctcgcagaagatatagttaattaccagaca
ggtgaaatttatcttgaagctggtgatgaaattgacgaaaaaacgttaagagttttgttt
gatgttaatgcggatcaaatcgatattcttgatattgatcacatgaatattggggcatat
atccgtaatactttaaaagtggataaaaatgaaagtcggcaagatgcattgtttgatatc
tatcgtgtaatgcgtccaggtgagccgccaacaatggatacagcagaagctatgttccat
tcgttattttttgatccggagcgttatgatctttccgctgttgggcgtgttaagatgaat
ttgcgtatggatcttgattgtccagatacagtccgagttttgcgtcaagaagatattctt
gctgtggttaagatgttggttgaattgcgcgatggccgtggtgaaattgatgatattgat
aatcttggcaatcgtcgcgttcgttccgtcggggagttaatggaaaatcagtatcgcatt
ggcttacttcgtatggagcgtgcgataaaagagcgtatgtcctcggttgaaattgatacc
gtcatgccacaggatttgattaacgcaaagccagctgctgcagctgttcgcgaatttttt
gggtcttcgcaattatcacagtttatggatcaaaccaacccattatcggaaattacccat
aagcggcgtctttctgctcttggtccaggtggtttaacccgtgaacgggcaggttttgaa
gttcgtgacgtacatcctacacattatggtcgtatttgcccgattgaaacgccggaaggt
cctaatattggtctgattaattccttagcaacctttgcgcgtgttaataaatatggtttt
attgaaagtccataccgcaaaattattgatgggaaagtgacaacggaagttatttatctt
tctgctatggaagagtcaaaacactatgtggctcaggctaattcttccttagatgctgaa
ggacgtttgtcagaagagtttgttgtttgccgtcatgcaggtgaagttttgatggctccg
cgcgatcatgttgatttgatggatgtttcaccaaaacagttggtttcagtagctgctgct
cttattccgtttttggaaaatgatgatgcgaatcgtgcgttgatgggatctaatatgcag
cgtcaggcagttccacttgtacgtgctgaagcaccatttgttggtacgggaatggagtca
atagtagctcgcgattcaggagctgctgttgctgcaaggcgtagtggtattgttgatcaa
gttgatgcaacacgtattgttattcgtgcgacagaagatttagatccttcaaaatctggt
gttgatatttatcgtttgcagaaatttcagcgttctaatcagtctacttgtattaatcaa
cgtcctcttgtgcatgttggtgatcgggtagaaaagggcaatatcattgcggatggtcca
tctacagatcttggagatctcgctcttggtcggaatgttcttgtggcatttatgccttgg
aatggctacaattatgaagattctattttgctttctgaacgtattgttgctgatgatgtt
tttacctcgattcatattgaggagtttgaggttgcagcacgtgatacaaagcttggtcct
gaagaaattacgcgagatattcctaatgttgcagaggaagcattaaggaatcttgacgaa
gctggaattatctatattggtgctgaagttcaacctggtgatattttggttggtaagatt
accccaaagggtgaaagtcccatgacaccggaagagaagcttctgcgtgcaatttttggg
gaaaaagcttcagatgttcgtgatacttctatgagaatgcctcctggggcttttggaact
gttgttgaagttcgtgtttttaatcgtcatggtgtggaaaaagatgagcgtgcgatggcg
attgaacgcgaagaaattgaacgtttagctaaagatcgtgatgatgagcagtcgattctt
gatcgcaatgtttatgcacgtcttactgatatgttggtaggtaaagttgctgtggagggc
ccaaaaggtttttcaaaaaacaagaagctggatactacaataatggggcattatccacga
tctcagtggtggcagtttacggttgaggatgaaaagcttcagaatgaaattgaggctttg
cgtaatcagtatgatgaatcgaaagaagctttgcaacgtcgttttatggataaagttgaa
aaagttcaaagaggcgatgaaatgccccctggtgtcatgaagatggtaaaggtttttgtg
gctgtgaagcgtaaaatccaaccaggcgataagatggcaggacgtcatggaaataagggt
gttgtttcacgtattcttccaatagaggatatgccatttcttgaagatgggacccatgct
gatatcgtcttgaatccgctcggtgtgcctagtcgtatgaatgttggtcaaattcttgag
acacatcttggttgggcctgtgcaggtatgggcaagaagattggcgatttggtggacttg
tatcaagagactggtgatatacttcctttgcgtcagcgtatagagaatcttatgcctgat
gatgatcataatgaaccagtgcgtcagtatgataatgagagcctttacaaattggcacta
cagatgaggaaaggtgtttcaattgcaactcctgtttttgacggagcacatgaagctgat
atcaacatgatgctggaagatgccggtttggatagctcagggcaggttacgctttatgat
ggtcgtactggagagccttttgatcgtcctgtgacggtggggtatatttatatgttgaaa
ttgcatcaccttgttgatgataagattcatgctcggtcaattggaccatattcgcttgtt
acgcagcaaccattaggtggtaaggcgcagtttggtggtcagcgttttggtgaaatggag
gtttgggcacttgaagcttacggtgcagcatacactttgcaggagatgctgacagtgaaa
tcggatgatgtagcggggagaacaaaagtttatgaggcgattgtgcgcggtgatgataca
ttcgaggcaggtatacctgagagctttaatgtgttagtgaaagaaatgcgttcactcgct
cttaatgtagaacttgatgatgcgcgtgagcttattgcacaacgtgcattatctgataca
acagaacaataa
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integrated database retrieval system
