Bombus huntii (Hunt bumble bee): 126872135
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Entry
126872135 CDS
T10446
Name
(RefSeq) DNA ligase 4 isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
bhun Bombus huntii (Hunt bumble bee)
Pathway
bhun03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bhun00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
126872135
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bhun03400
]
126872135
Enzymes [BR:
bhun01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
126872135
DNA repair and recombination proteins [BR:
bhun03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
126872135
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
BRCT
RNA_ligase
DNA_ligase_IV
BRCT_2
bPH_3
Motif
Other DBs
NCBI-GeneID:
126872135
NCBI-ProteinID:
XP_050487708
LinkDB
All DBs
Position
12:complement(759489..766863)
Genome browser
AA seq
899 aa
AA seq
DB search
MSKMNGTLASKIEFVELCGIFEKISKTDTRKSRISRKADILEQFFQKCRNMGRELKTEYP
DMDVSLFPILRLILPDLEREREAYNLKEKSLADIYISIFCFGKNSKDAIKLKQYKTPTAK
NITRCNFADKAYWVLQNRFQREGSHISIEQINFILDNLSLRRNETFKDLLRKLNALEFKW
ITRIILKRLDLGIGTKKILQVFHPDADSLFNVSSNLRQICDTLYDPQLRYHHDIQVFSHF
KPMLLEECQIENVEKLFNGRKQYFVQCKYDGERSQIHMKNGKYKYFTRQGYDITNKPGFG
ETTSAGFMSSVFGRLLNPQVKSVILDGELMGWHKERKLLGSKGMNFDVKKLSKDSPYQQC
FVAFDIIMHNDILLNNEPYEKRLEILKDVFKEEEGCLLLCKSTKVSRSEELCKIFNESIR
NKEEGIVVKECDSKYKPNVRNGTNCYKIKAEYSEGLVHDIDLIILGGYYGRKFMGLVNSF
LMGVASSAKTPGENPTKFLSVVSVNSGFSMNTLKELGRMFKDKWQTERPENVVPPKVEPN
LWIRPENSIILTIKASEMICSNNYPTGYSLRFPRVTSVRTDKPWYDVCTTDNLKLLIKDT
QPIQKLTKREIPYEDIEEACESKVCKTRKQRSIKYEEKSMKPNIYDNPPVHLTRLFDDKE
ICVINGVDELPKEQIEEILLQHRANVVQNPLKENYCIIVGNVKTVRASCIIQSKKYDVVT
LDWFRRVTKKENWSSLQDFLPWDLICSRESTKRRLAQYYDDYYDHYTIDADEESLLRSFK
KVEDTDQNVKFDYTEMKKIDQELFDSEISPYSLFRGIVAYFYDSSDLSKFEFRFMGGTIR
ETIDDSVTHIFINNNSTDIELQNLIDNKSQASLTIIKSEWIGECFKQNTIMPYSVYLVQ
NT seq
2700 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaaatgaatggaacattagctagtaaaattgaatttgtggaattgtgcggtata
ttcgagaaaatctctaaaacagatactaggaaatcacgaatatctaggaaagctgatatt
ttggagcagttctttcagaaatgtcgtaatatgggtcgtgaattaaaaactgagtatcca
gatatggatgtttcactctttcctatattaagattaatcttaccagatcttgaacgagaa
cgtgaggcatataatttaaaagaaaagtctcttgccgatatttatattagtatattttgt
ttcgggaaaaacagtaaggatgcaattaaacttaaacagtacaaaactccaactgcaaaa
aatattacacgttgcaattttgcggataaagcttattgggttttacaaaatcgttttcaa
cgtgaaggttctcatatctcaatagaacaaatcaattttattctcgataatctatcgtta
agaagaaatgaaacgttcaaagatttattaaggaaattaaatgcattagagttcaaatgg
ataacacgaattattctaaaaagattggatcttggtattggaacgaaaaagatattgcaa
gtttttcatccagatgcagattcattgtttaatgtatcatctaatttgcgacaaatttgt
gacacattatatgatcctcaattgagatatcatcatgatattcaagttttttctcatttt
aagcctatgttattagaagaatgtcaaattgagaatgtagagaaactttttaatggaaga
aaacaatactttgtgcaatgcaaatatgatggcgagcgatctcaaatacatatgaaaaat
ggcaaatataagtattttacaagacaagggtatgatattacaaataagcctggttttggg
gaaactacttctgcaggttttatgagcagtgtatttggtcgattattaaatcctcaagta
aaatcagtcattttagatggtgaattaatgggttggcataaagaaaggaaattgttaggc
tcaaagggaatgaactttgatgttaagaaactctcaaaggatagtccttatcaacaatgt
tttgttgcattcgatattattatgcataatgatattttacttaataacgaaccttatgaa
aaaagacttgaaattttaaaagatgtatttaaagaggaagaaggttgccttttattatgt
aaatctactaaagtttctagaagcgaggaattatgtaaaatattcaatgaaagtattagg
aataaagaagaaggaattgtagtaaaagaatgtgatagtaaatataaaccaaatgtacga
aatggtactaattgttataaaataaaagctgagtattctgaaggtttggtacacgatata
gatttaattattctcggtggttattacggtagaaaatttatgggtttagtaaatagcttt
ttaatgggcgtagcttcttctgcaaaaactcctggtgaaaatcctacaaaatttttatct
gtagtatcagtcaacagtggtttttctatgaatacattgaaagaactcggaagaatgttt
aaagataagtggcaaacagaacgacctgaaaatgtcgtgcctcccaaggttgagccaaat
ttatggattcgtcctgaaaattccatcattttgaccataaaagcatcggaaatgatatgt
agtaataattatccaaccggatacagtttacgatttcctagagttacaagtgttagaact
gataaaccgtggtatgacgtttgtacaactgataacttgaaattattaattaaggatacg
caaccaattcagaaattaacaaaacgagaaataccttatgaagatatagaagaagcatgt
gaaagtaaagtatgtaagacaaggaaacaacgttcaataaaatatgaagagaaatcaatg
aaaccaaacatttatgacaatccaccggttcatcttacccgactttttgacgacaaagaa
atttgcgtgataaatggcgtcgatgagttacctaaagaacagattgaagaaattcttctg
caacacagagcaaatgttgtacaaaaccctttaaaggaaaattactgtattattgttggt
aacgttaaaacggtaagagcaagttgcatcatacaaagtaaaaagtatgatgtggtaaca
ttggattggtttagacgggttaccaaaaaagaaaattggtcgtcattacaagatttttta
ccatgggatttgatatgtagtcgtgaatcaacgaaacgacgattagcacaatattatgat
gattattatgatcactatactatagatgctgacgaagagagtttattacgttcgttcaaa
aaagtcgaagatacggatcaaaatgttaaatttgattatacagaaatgaaaaaaatagat
caagaattatttgatagtgaaatatcaccttattctctatttcgtggtatcgtggcatat
ttttatgactcatcagatttatcaaaatttgaatttcgttttatgggtggtactattaga
gaaactattgacgattctgtgacacatatttttatcaataataattccaccgatattgaa
ctccaaaatttaattgacaataaatcccaggcatcgttaacaattattaaaagcgaatgg
atcggagagtgctttaaacaaaatacaattatgccttattctgtatacctggtccaataa
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