Bidens hawaiensis: 143536334
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Entry
143536334 CDS
T11418
Name
(RefSeq) uncharacterized protein LOC143536334
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
bhw Bidens hawaiensis
Pathway
bhw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bhw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
143536334
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bhw03019
]
143536334
Messenger RNA biogenesis [BR:
bhw03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
143536334
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
143536334
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Other DBs
NCBI-GeneID:
143536334
NCBI-ProteinID:
XP_076886469
LinkDB
All DBs
Position
Unknown
AA seq
2407 aa
AA seq
DB search
MIPLMQRFSTEIRLLLESLNESNSDSVLRELTQFVDYGTEGNILLLETCLHHFNVFEKDL
KSTRLEPVVASIFRKLLEKPQFSTVFSMSVRPAVITEEFLDNFSAALQLSAYEKLGFGLA
LTDSENNDIRMAGRNFCMRQIEELCATNASLQAADFVQDVLLFLNKSEVLSKHVDSFMHL
LSLVQFDEDSEFILAPFLSEELQDSKLLRNLDFLNEGNENEFDAILAEMEREMNMADMLK
ELGYKCTLDVPLCKDLLSSFSPLTEVTVARILGTVIRSDASFQDHENAFHTFYSALGRGN
LSDMSSPNSWNTDVLIESIKQLAPGINWTTVIENLDHEGFYVPDEAAFSLLISCYKYASQ
DLFPLAAVCGDVWRNTEGQLSFLKYAVSAPPELFTFAHCKRQLANADAVYSQKLQSGHAN
HAWLCLDLLEVLCQLAERGLAKSVRSLLEYPLKQFSEVLLFGMAHVNTPYDLLQHEVSLA
VVPVMLKDASVGGILLHLWRVNPPYLLRALNDAINIDPDNVIRVLDLCQELKITSPVLDM
VPMLFGIRLAALASRKDLVDLEKWLSSNLSTYKDTFIEECLRFLKEVEYNAQESSNRLHN
SGNIWSLYMETTPVFIKVLQAHTDLHSSNQLSKELERLNLNLTNNNSRMRNNGGPDSSTS
EVYADDIETEANSYFHQMFSAQLTVDAMIQMLARFKDSSERREQSIFECMIANLFEEYKF
FIKYPDRQLRIAAALFGLLIKNQLVTHLTLGIALRAVLDALRKPADSKMFVFGTKALEKF
MDRLIEWPQYCQHILQISHLRGTHPELVAFIERALARNSSSHPEPEAAAYNPAADQHHNS
IQHTNVEVSGSSFPLIGSGGTQLGSHISSPIQLQQRNPSYLDERNRASVASSYMKSNLTT
TVQASVAPPNDPVNIPKPHSVVSSSAALASSPAFTRSSRAVTSARFGSALNIETLVAAAE
RRDTPIEAPPSEIQDKISFIINNLSAANIEAKAKEFTEVLKEQYYAWFAQYMVMKRASIE
PNFHDLYLKFLEKANSKPLNKEIVQATYENCKVLLGSELIKSSSEERSLLKNLGGWLGKI
TIGRNHVLRANQIDPKALVIEAYEKGLMIAVIPFTSKILESCSNSLAYQPPNPWTMGVLA
LLAEIYAMPNLKMNLKFEIEVLFKNLNVDLKEVTPSSHLIDKVREIEGNPDFSTKDVGTA
QQPMAGEVKSNILSINQVELPVEVGSSTHSGGHSRILSQYAAPHHLPPVTLSEDEKMAAL
GLSDKLPSAQGLLQAQLPFSVGQLPSSSMDQQVIINPKLQALGLHVPFQRVLGYTMEMAI
KEIVSSIVQRSVSIATQTTKELVLKDYAMESDESRIHSAAHLMVASLAGSLAHVTCKEPL
RGSISSQLRNNLQALNLNVATELLEHAVQLVTNDNLDLGCALIEQAATEKAVQTIDSELA
PQLSIRRKHREGPYFDTSLYTQGHVGVLPEALRPKPGRLSHSQQRVYEDFVRLPWQNQSN
QNSNAVPLGPSAPPSGALHRGYGSGSVSGQMNPDIFSSGINVAQSLDAEDMEPTSVKLLS
GSSVHGSMGGGMGLHNFENEAALSSFSSVSAPEPHIPEASSVSKDPSVFAQPLPSPSPSP
SPSPLASDRIISTSTAEPSLTTKDAVDKYQLISEELESLIAKDAKEAEIQAIIGEVPGVI
LRCISRDEAALAVAQKVFQGLYENAANASHVGAHLAMLAAIRDVSKLVFNQLTSWVIYSD
EDRKFNKDITVCLIRRELLNLADYNNHLAKLLDAGKNKVATEFAISLIQTLVASDARVIS
ELHSIVDVLAKLATRPDAPEALQQLVEVVRNPAAGKDDLNKQQKDKKAANHVVASRDETN
ILESSEPDPAAFQEQVSLLFAEWYKIYELPGVNDQLTARFVLQLQQNGLLKADDTSDRFF
RRLLDIAVSHCISSEGAVQSHQQTQALSFLAIDMYASLVFSILKFSAADHGSSKMSLLSK
VLTVTVRFIQKDAEEKKTSFNPRPYFRLFIDWLLDLNTLDPVFEGANFQVLTALATSFHT
LQPLKVPAFSFVWLELVSHRSFMPKLLSGNGQKGWPYFQRLLVDLFQFMEPFLRNAELGE
PVRFLYKGTLRVLLVLLHDFPEFLCDYHFSFCDIIPPSCIQMRNIVLSAFPRNMRLPDPS
TPNLKIDLLAEISQSPRILSEVDAALKAKQMKNDVDEYLKTRPQGTSFLSELKQKLLLSP
SEAARAGTRYNVPLMNSLVLYVGMQAILQLQARTPHGQSMASNASLAIFLVGAALDIFQI
LIMELETEGRYLFLNAVANQLRYPNNHTHYFSFILLYLFSESNQEAIQEQITRVLLERLI
VNRPHPWGLLITFIELIKNPRYNFWSRSFTRCAPEIEKLFESVSRSCGGPKPVDDSVVAG
GISDTMH
NT seq
7224 nt
NT seq
+upstream
nt +downstream
nt
atgattccattgatgcaacgattctcgactgaaatccggctgttgctcgagagcttgaac
gaatccaattccgattccgttcttcgcgagctcactcagtttgttgactatggaactgag
ggaaacattctgcttttggagacctgcttgcaccactttaatgtgtttgaaaaagacttg
aaaagtactcgtctggagcctgtagttgcttcaatttttagaaagttgttggaaaaacca
cagtttagtactgtattctcaatgtcagtaaggccagcagtaatcactgaggaatttctg
gataatttttctgctgctctacaattatcggcatatgagaaacttgggtttggtcttgct
ttgacggattcagagaataatgacatcagaatggctggaagaaatttttgtatgaggcaa
attgaggaattatgtgcaaccaatgcctctttgcaggctgctgactttgttcaggatgta
ttgctgtttcttaacaagtctgaagtcctttctaaacatgtggactcgtttatgcatttg
ttatctctggttcagtttgatgaggattcagagtttattttagctcctttcctatcagaa
gagctacaagattctaagttattgaggaatttggattttctgaatgaaggcaatgagaat
gaatttgatgctatcctagcagaaatggagagggagatgaacatggctgatatgttgaaa
gaattgggctataagtgcacactagacgtgccactatgcaaagatttgctatcttccttc
tcacctctaaccgaagtaactgtcgctaggatactcgggacagttatccgatccgatgcc
agctttcaggaccatgaaaatgcatttcacacattttattctgctcttggtagagggaat
ctctctgatatgtcctcaccgaactcttggaacactgatgtccttattgaatcaattaag
cagcttgctcctggaatcaactggaccactgtgattgaaaaccttgatcatgaaggtttt
tatgttccagatgaggcagcattttcactactgatttcttgttacaaatatgcatcacag
gatctttttccactggctgctgtttgtggcgatgtttggagaaacactgaaggacaactg
tcttttctcaagtatgctgtttctgcaccacctgaactattcacgtttgcacactgcaaa
agacaattggcaaatgctgatgcagtctatagtcagaagttgcaatctggtcatgcaaat
catgcatggttatgccttgaccttttggaggtcctgtgccagctagcagagagaggcctt
gcgaaatctgttcgatcgctgcttgaatatcctcttaaacaattctctgaagtgttgcta
ttcggaatggctcatgttaatacaccatatgatctccttcaacatgaagtttctttggct
gttgttcctgtgatgctaaaagacgcctctgttggtggcattttgcttcatctttggcgt
gttaacccaccctatttgttgagagctttaaatgatgcaataaacattgatccagataac
gtcataagggtcttggatttgtgccaagagttaaagattacatctcctgtattggatatg
gtacctatgctttttggtattaggctggctgctttggcatctaggaaagatcttgtagat
ctggagaagtggctgagctcaaatctaagtacttacaaagatactttcattgaggagtgc
cttcgattcttgaaggaggtggaatataatgctcaggaatcttcaaatcgattgcataat
tccggaaacatctggagtttgtatatggagacaactcccgtgttcataaaggttcttcaa
gcacatacagacttgcactcatctaaccaactttctaaggaattggaaagattaaatttg
aatcttacaaacaacaattcaaggatgagaaacaatggtggtcctgattcatcaacatct
gaagtatatgcagatgatatagagacagaggccaactcttatttccatcaaatgttttct
gctcagttgacggttgatgcaatgattcaaatgctggcccgattcaaggattcttctgaa
agaagagaacaatccatatttgagtgcatgatcgcgaatctgtttgaagaatacaagttt
ttcattaaataccctgacagacaacttagaatcgctgcagctctctttggtttgcttatt
aagaatcaactggtgacacatctgacacttggtattgccttacgagctgtgttggatgcc
ttgcgtaagcctgcggattccaaaatgtttgtttttggtacaaaggctttggagaagttt
atggaccgtctgattgaatggccacagtactgtcaacacatcttacaaatttcgcatcta
cgtgggacccatcccgagcttgttgctttcattgaaagggctcttgctagaaactcatca
agtcatccagaaccagaagcggcagcctacaatcctgctgctgaccaacatcataattct
attcaacatacaaatgttgaggtgtcgggttcatctttcccgctaattggatctggtggt
acacaacttggttcacacatatcttctccaattcagcttcagcagaggaacccgagttat
ttagatgagagaaatagagcctctgtagcttcctcctatatgaagtctaacttaactacc
acagtgcaagcttcagttgctccaccgaatgatcctgttaatattcctaagccacatagc
gtggttagttcttcagcagcattggcttcatctcctgcttttactcgttcttctcgagct
gttacttcagctaggtttggttctgcgttaaatattgaaacacttgttgctgctgctgaa
cgtagagacactcctatcgaggccccaccatctgaaattcaggataagatttcttttatt
attaataatttatcagctgccaacattgaagctaaagctaaggaattcacagaagttttg
aaagaacagtactatgcttggtttgctcagtacatggtcatgaaaagagcaagtatagaa
ccaaattttcatgacttgtacttgaagtttcttgagaaagccaactcaaaacctctgaac
aaagagattgttcaagccacctatgagaattgcaaggttctcctagggtctgaacttata
aaatctagttcagaagaacgttcgttgctgaagaatcttggaggttggttgggaaagatc
accatcggtagaaaccatgttctgcgtgctaatcaaattgatccaaaggctttagttatt
gaggcatatgaaaagggtttaatgattgcagtgattccatttacctctaagattttagag
tcatgttcaaacagtctagcatatcaaccgcctaatccttggaccatgggagttcttgca
ttacttgctgaaatctatgcaatgcctaatctgaaaatgaatctcaagtttgaaattgag
gtattgttcaagaatctaaatgtggacttgaaggaagtaactccatcatctcatcttatt
gacaaagtgagggaaattgaaggaaaccctgatttttctaccaaggatgtcgggacagct
cagcaaccaatggccggagaagtgaaatctaatatattatccataaatcaagtcgagtta
ccagttgaagttggtagttctactcattctggtggtcattcacgcatattatcccagtat
gctgctccacaccatctccctcctgttactttaagtgaagatgaaaagatggcagcttta
ggcttatctgataagcttccatctgctcaagggcttttacaagcacaattgcccttttca
gttggtcagctaccatcatcaagtatggatcaacaagttattatcaaccctaaactccaa
gctctcggtttgcatgtgcccttccagcgtgtgcttggatatacgatggaaatggctatc
aaagaaatagtgtctagcattgttcagcgtagtgtgtcaatagcgacccaaacaacaaaa
gaacttgtcttaaaggactatgcaatggagtcagatgagagtcgtatacatagtgcagct
cacttgatggttgcaagtttagctggaagtctagctcatgtcacatgcaaggaaccactc
cgtggttcaatatcaagtcagctaagaaacaatctccaggctctgaatttgaatgttgca
actgaacttcttgaacatgcggttcagcttgttactaatgataacctcgacttgggctgt
gcactaatcgaacaggctgcaactgaaaaggctgtgcaaacaatagatagtgaacttgca
cctcaactttcaataagaaggaagcacagagaaggaccctattttgatacaagcctgtat
acacaaggtcatgtgggtgtgctaccagaagccctgcgccctaaacccggccggttatcc
cattctcaacagagggtttacgaggactttgttcggttaccgtggcagaatcaatctaac
cagaattctaatgctgtaccacttggcccgtcggctccacctagtggtgctctacaccgg
ggttacgggtcaggctcggtttcgggtcaaatgaaccctgatatcttctcatctggtatc
aatgtagcacagtcgttggatgctgaagatatggagcctacttcagtaaaactccttagt
ggttcatcggtacatggctcaatgggtggtggaatgggtttgcacaactttgagaatgaa
gcggctctgtcttcgttttcttcagtatcagctcctgaaccacacattccggaagcttct
agtgtctccaaagacccgagtgtatttgcacagcctttgccttcaccttcaccttcacct
tcaccttcacctttagcttcagatcgcattataagtacatccactgcagaaccttcattg
actactaaagatgcagttgataagtatcagctcatctcagaggagttggaatctttgata
gcaaaggatgctaaagaagctgaaattcaggcaattattggggaggtacccggggtgatt
cttagatgtattagtcgggacgaggctgcgttggctgttgctcagaaggtctttcaaggt
ttatatgaaaacgcagcaaacgcctctcatgtcggtgctcaccttgccatgttggctgcc
attcgtgatgtcagcaagcttgtgtttaatcaactaactagttgggtaatatattctgat
gaagataggaaatttaacaaggatattactgtttgcttaattcgcagggagttgttgaac
ctcgctgattacaataatcacttggccaagcttcttgatgccggcaaaaacaaggtggca
actgaatttgcaatatctctcattcaaacactggtggctagtgacgcgagagtaatatct
gaacttcatagtattgttgatgtattagctaagcttgcaacaaggcctgatgctcctgag
gcgcttcaacaacttgttgaagtagttaggaatcctgcagctgggaaggatgatttgaac
aaacaacaaaaagacaaaaaggccgctaatcatgttgtagctagcagggatgaaaccaat
attctggaatcttctgaaccagatcctgctgcttttcaagaacaggtttctctgctattt
gctgaatggtacaagatatatgaacttcctggtgtgaatgatcagttgactgctcgtttt
gttcttcaacttcaacaaaatggccttttgaaagccgatgatacatcagatcgcttcttt
cgtcgtcttctggatattgctgtatcacactgtatatcttctgagggtgcggtccaatct
catcagcagacacaggcattatcttttctagccattgatatgtatgcatcactagtcttt
tcaatactgaagttctctgccgctgaccatggatcaagcaagatgtcacttctgtcaaag
gtgctaacggtgacagtgagattcattcaaaaggatgcagaagagaagaaaacatcattt
aacccaaggccttactttaggttattcattgattggctgcttgaccttaacaccctcgat
cctgtctttgaaggtgcaaactttcaggttttgacagctctagcaacttcctttcatacc
ctacagcctctgaaagttcccgcattcagctttgtatggctcgagctagtaagccaccga
agtttcatgccaaaactattaagcggaaacggtcaaaaggggtggccatattttcaacgt
ttgctggttgacttgttccagtttatggagcctttcttgaggaatgctgaacttggcgag
ccggttcgttttctgtacaaaggcacactgagagtgcttttagtgctacttcacgatttc
cccgagttcctttgtgattatcatttcagtttctgtgatattattcctccaagctgcatt
cagatgcgaaatatagtacttagcgcgtttcctcggaacatgaggctacccgacccttca
actcccaacttaaagattgatttgttagccgagatcagtcaatcacctcgaattctgtca
gaggttgatgctgcattaaaagccaagcaaatgaaaaatgacgtggatgagtatctcaag
acgaggccacaagggacttcatttctttctgagttaaaacaaaaactgcttctttcacca
agtgaagctgcacgggcaggaacgcgttacaacgtgcctttgatgaactctctcgttctt
tatgttggaatgcaggcgatcttgcaattgcaggctagaacgccacatggacaatcaatg
gcgagtaatgcatcactcgctatattcttggtgggtgctgctttggatattttccaaata
ttgataatggagttggagaccgaaggacgttacctctttttaaacgcggttgctaaccaa
ctgcgttatcccaacaaccacacacattacttttcattcatccttctttacttgttttcc
gagtcaaaccaggaagctattcaagaacagataactagagttttattggagcggttgatt
gttaaccgaccgcacccgtggggcctactcatcactttcattgagcttatcaagaatccg
aggtataatttctggagcagatctttcacaaggtgtgctcccgagattgagaaactgttt
gaatcggtttcaagatcgtgtggtgggccgaagcctgtggatgatagtgtggttgccgga
ggaatatctgataccatgcattag
DBGET
integrated database retrieval system
