Bidens hawaiensis: 143577845
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Entry
143577845 CDS
T11418
Name
(RefSeq) uncharacterized protein LOC143577845 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
bhw Bidens hawaiensis
Pathway
bhw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bhw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
143577845
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bhw03019
]
143577845
Messenger RNA biogenesis [BR:
bhw03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
143577845
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
143577845
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Other DBs
NCBI-GeneID:
143577845
NCBI-ProteinID:
XP_076917682
LinkDB
All DBs
Position
Unknown
AA seq
2421 aa
AA seq
DB search
MIPLAQRLSSEFRLLFESLNESNYDSVTRELFQYVDYGTEGSILLLETCLNYFNVYEKDL
RSAPLEPLVASLFRKLLEKPQFSTVFSMAVRPTAITEEFLDNLSVALQLSAYEKLGFGLA
LTDSENNDIRTAGSNFCMKQIEEFCTSNGSLHTTDYVQDVLLFLNKSEVLSKHVDSFMEL
LSLVQFDKDSGFILAPLLSDEFHDSKLLRYMDFLNEGNENEFDDILAEMEKEMNMADMLK
ELGPKCTLDVSLCKDLLSSFSPLTEATVARILGTIIRSDTGLQDHENAFSTFYSAIGKGT
LSDMTSLNTWNTDVLIDSIKQLAPGISWVTVIENLDHEGFYVPDEAAFSQLISCYRRASQ
DPFPLAAVCGNVWRNTEGQLSFLKYAVSVPPEVFTFAHCKRQLANVDAVNSHKYQPGHAN
HAWLCLDLLEVLCQLAERGLAKSVRSLLEYPLKHCPEVLLFGMAHVNTPYNFLQLEVSLA
VVPVIVKDASVGGIMLRLWHVNPSFLLRALSDALNIDSDTITRVLDLCQDLKIVSPVLDM
VPMPLGIRLASLAFRKELIDLEKWLTSNLTTYRDTFFEECLRFLKEVDSGAQESSNRLHN
PGNIWSLYMETTPVLLKVLQAHANLLSSDQLPKELEKLHLKVTNNSSRMRNNGGPDSSTP
EVYAEDVEAEVNTYFQQMFSAEMTVEAVVDMLARFKESPERREQSVFECMIANLFEEYKF
FNRYPERQLKLAADLFGKLINNQLVTHLTLGIALRAVLDALRKPADSKMFVFGTKALEKF
MDRLIEWPQYCQHILQISHLRGNQPELAAFIERLLARNSSSYSESDAGYTPTADQHHSSI
SQPKTEVAGSSFPVIGSGTSHLGSQLSSPIQLQQRNQSYLDERQRASVPSSIYMKPNLIT
TGQTSVALANEPVNIPKVTATLVNDPVNMPKPPSVVSSSAALASSPAFVRPVRAVTSAKF
GSALNIETLVAAAERRETPIEAPPSETQDKISFIINNLSNANIESKAKEFTEILKEPYYA
WFAQYMVMKRASIEPNFHDLYLKFLEKANSKALNKEIVQATYENCKVLVGSELIKSSSEE
RSLLKNLGGWLGKITIGRNQVLRAREIDPKALIIEAYEKGLMIAVIPFTSKILESCSNSI
AYQPPNPWTMGVLGLLAEIYAMPNLKMNLKFEIEVLYKNLGVDMKEVTPSSLLIDRVREV
EGNPDFSNKDVGPAQPPLVAEVKSNPIATLNQVELPVEIGSSSHLGGRSRILSQYAAPHH
LPAVTLSEDEKMAALGLSDKLPSAQGLLHAQMPFSVGQSTLQLPSSSMDQDVIINPKLQA
LGLHIPFQSVLGISMELAIKEIVTGIVQRSVSIATQTTKELVLKDYAMESDESRIHSAAH
LMVASLAGSIAHVTCKEPLRGSISSQLRSNLQALNVNIASELLEHAIQLVTNDNLDLGCA
FIEQAATEKAVQTIDSELAPQLSIRRKQRDGVGAAFFDNSLYTQGYVGVLPEALRPKPGR
LTHSQQRVYEDFVRLPWQNQSNQNSASVPLGPSPPPPPGSGALHRGYGSGSGSASVSGQL
NPGMFSSGINPVAHSLDSEDMEPSSVKLLSGSSMHSSMGGGMGPHNVESVLSSFSSAPAP
ELNIPESFSVSKEQGVYAQPLPSPSPSDRIISTIVEPSLTTKDAVDKYQLISEELESLIA
KDAKEAEIQSVIGEVPGVILRCISRDEAALAVAQKVFQGLYENVANTAHVNAHLAMLTAI
RDASKLVFNQLTSWVIYSDGDRKFNKDITIGLIRKELLNLAEYNIQMAKLLDAGKNKVAT
EFAISLIQTLVASDTRVISELHSVVDVLAKLATRPDAPEALVQLIEIAKNPAGKDDLIKQ
QKDKKVSSLPVTSRDDTNVMESSEQDPAAFQEQVSLLFAEWYRIYELPGVNDQLSARFVL
QLQQNGLLKADDTSDCFFRRLLDIAVSHCISSEGAVQSHQQSQTLSFLAIDMYASLVFTI
LKYSADHGSSKLSLLSKVLTVTVRFIQKDADDKKTSFNPRPYFRLFIDWLLDLNSLDSVF
EGANFQVLTALATSFHALQPLKVPAFSFVWVELVSHRSFMPKLLSGSLQKGWPYFQRLLV
DLFQFMEPFLRNAELAEPIRFLYKGTLRVLLVLLHDFPEFLCDYHFSFCDIIPPSCIQMR
NIVLSAFPRNMRLPDPSTPNLKIDLLAEISQSPRILSEVDAALKAKQMKTDVDEYLKTRP
QGTSFLSELKQKLLLSPSEAARAGTRYNVPLMNSLVLYVGIQAIMQQQARTPHGQTMASN
AIFLVGAALDIFQTLILELENEGRYLFLNAIANQLRYPNNHTHYFSFILLYLFSESNQEA
IQEQITRVLLERLIVNRPHPWGLLITFIELIKNPRYNFWSRSFTRCAPEIEKLFESVSRS
CGGPKPVDDGVVAGGIADTLH
NT seq
7266 nt
NT seq
+upstream
nt +downstream
nt
atgattccgttggcgcagaggctatcaagtgagttccggctgctgtttgagagcttgaac
gaatccaattacgactccgttactcgcgaactgtttcagtatgttgattatggaacagag
ggaagcattctgcttcttgagacctgcttgaactacttcaatgtttatgaaaaggatttg
agaagtgctcctttggaacctttagttgcttcactttttagaaaattgttggaaaagcca
cagtttagtactgtattctcaatggcagtaaggccgacagcaatcactgaagaatttttg
gataatttatctgttgctctacagttaagtgcatatgagaaacttggatttggtcttgct
ttgacagattcagaaaataatgacatcagaacggctggaagtaacttctgtatgaagcag
attgaggaattttgcactagcaatggctctctgcataccactgactatgttcaggatgta
ttgctgtttcttaataaatctgaagtcctgtctaaacacgtggattcatttatggaattg
ttatctttggttcagtttgataaggattctgggtttatcttagctcctctcctttcagat
gagtttcatgactccaagttattaaggtatatggattttctcaatgaaggaaatgagaat
gaattcgatgatattttagcagaaatggagaaggagatgaacatggcagatatgctgaaa
gaattgggtcctaagtgcacattagatgtatcactttgcaaagatttgctatcttcgttt
tcacctcttactgaagccactgtcgctaggatacttggcactattatccgatctgatacg
ggtcttcaggaccatgaaaatgcattttctacattttattctgctattggtaaagggact
ctgtctgatatgacttcattgaacacctggaacactgatgtcctgatagattcaattaag
cagcttgctcctggaatcagctgggttactgtaattgaaaatcttgatcacgagggtttc
tacgtcccagatgaggcagcattttcacaactgatttcttgttacagacgtgcatcccag
gatccatttccattggctgctgtttgtggcaatgtttggagaaacactgagggccagctg
tcctttctgaagtatgctgtttctgtaccacctgaagtattcacatttgcacactgcaaa
agacaattggcaaatgttgatgcagtcaatagtcataagtatcaacctggtcatgcgaat
catgcgtggttatgccttgaccttttggaggtcttgtgccagctagctgagagaggcctg
gcaaagtctgttcgatcactgcttgaatatcctcttaagcattgccctgaagtgttgcta
tttgggatggcacatgttaatacaccgtataattttcttcaacttgaagtttctttggct
gttgttcctgtgatagttaaagatgcttctgtgggtggcattatgctccgtctttggcat
gttaacccttcttttttgttaagagctctcagtgatgcactcaacatagattcagatacc
atcaccagagtcttggatttatgccaagatttaaagattgtatctcctgtattggatatg
gtacctatgcctttaggtattaggcttgcttccttggcttttcggaaagaactcatagat
cttgagaaatggctgacctcaaatctaactacttatagagatacattctttgaggaatgt
ctccggtttctgaaggaggtggattctggtgctcaggagtcttcaaatcggctgcataat
ccaggaaacatctggagtctttatatggagacaactcctgtgcttttgaaggttcttcaa
gcgcatgcaaacttgctatcctcggaccagcttcctaaggaattggaaaaattacatttg
aaggttacaaataacagttcaaggatgaggaacaatggtggtcctgattcatcgacgcct
gaagtatatgcagaggatgtagaggcagaggtcaacacttatttccagcaaatgttctct
gccgagatgactgttgaagccgtggttgatatgctagctcgattcaaggaatctcctgag
agaagggaacaatccgtatttgagtgcatgattgccaatctgtttgaagagtacaagttc
tttaacagataccctgagagacaactaaagctcgctgcagatctctttgggaagcttatt
aataatcaactcgtgactcatctgacacttggcattgcgctacgagctgttttggatgca
ctgcgtaaacctgcagattcgaaaatgtttgtttttggtacgaaggctttagagaagttt
atggatcggctgattgaatggccacagtactgccaacatatcttacaaatatcacatcta
cgtggcaatcaacctgagcttgctgctttcattgaaaggctgcttgctagaaattcatca
agctactcagaatcagatgcaggctacactcctactgctgaccaacaccatagctctatc
tcacaaccaaagacagaggtggcgggttcatcttttcctgtgattggatctggtacttca
catcttggttctcagttatcttctccaattcagcttcagcaaaggaaccagagttattta
gatgagagacagagagcttctgtaccttcttccatctatatgaagccaaacctaattacc
acaggacaaacatcagttgctcttgcaaacgaacctgttaacatccccaaggtgaccgcc
acccttgtaaacgatcctgtcaacatgcccaagccaccaagtgtagttagttcgtcagca
gcgttggcttcgtcacctgctttcgttcgtcctgttcgagctgttacttcagcaaagttt
ggttctgctttaaatattgaaacacttgttgctgctgctgaacggagagaaactcccata
gaggctccaccatcagaaactcaggataaaatatcttttattatcaacaatttgtcgaat
gccaacattgaatctaaagccaaggagtttactgaaattttgaaagaaccgtactatgcg
tggtttgctcagtacatggtcatgaaaagagcgagtatcgaaccaaattttcatgacttg
tacttgaagttcctggagaaagccaactcaaaggctcttaacaaagagattgttcaagcc
acttatgagaattgcaaggttcttgtaggatctgagcttataaagtccagttcagaagaa
cgttctctgctaaagaatcttggaggctggcttggaaagataacaattggtagaaaccaa
gttttgcgcgctagggagattgatccaaaggctttaattatcgaggcttatgaaaagggt
ttaatgattgcagtgattccatttacctctaagatattggagtcatgttcaaacagtata
gcatatcaaccgcctaatccctggaccatgggagttctaggattacttgctgaaatttat
gcaatgccaaatctgaaaatgaatctcaagtttgaaattgaggtattgtacaagaatctt
ggtgtggatatgaaggaagtaacaccatcatcccttctaatagacagagtgagagaagtt
gaagggaatcctgatttttcaaacaaagatgttgggccagctcaaccaccattggttgcg
gaagttaaatctaatccgatagctactctaaatcaagttgaattaccggttgaaattggt
agttcatctcatttgggtggtcgttcacgaatattatctcagtatgctgctccacatcat
cttcctgctgttacattaagtgaggatgagaaaatggcagctttaggcttgtctgataag
cttccatctgcccaaggacttctacatgcacaaatgcccttttcagttggtcagtcaact
ttgcagctaccatcatcaagtatggatcaagatgttattatcaaccctaagctacaagct
ttaggcctgcatatcccctttcagagtgtgcttggaatttccatggaactggctattaaa
gaaatagttactggtattgttcagcgcagtgtttcaattgcaactcaaacaacaaaagaa
ctcgtgctaaaggactatgctatggagtcggatgaaagccgtatacacagtgcagcacac
ttgatggttgccagtttggctggaagtatagctcatgtcacgtgcaaggaacctcttcgc
ggttcaatatcaagtcagctaagaagcaatcttcaggctctgaatgtgaatattgcaagt
gaactgcttgaacatgcaattcagcttgttacaaatgacaatcttgacttgggctgtgca
tttatcgagcaggctgcaactgaaaaggctgtacaaacaatagatagtgaacttgctcct
caactttcgataagaaggaaacagagagacggggttggggccgccttttttgataatagt
ctgtatacacaaggttatgtaggtgttttaccagaagcccttcgtcctaaacctggccga
ttaacccattctcaacaacgggtctatgaggattttgttcggttaccatggcaaaatcag
tctaaccaaaattcggcatctgtacctcttggtccttcaccaccgccaccaccaggaagt
ggtgctttacaccggggttatggttcaggctcagggtcagcttctgtttcaggtcaactg
aaccctggaatgttctcatctggtatcaatcctgtagcacactccttggattctgaagat
atggagcctagctcagtaaaacttcttagtggttcttccatgcatagctcgatgggcggt
ggtatgggtccacacaatgttgaatccgttctatcttcattttcttcggcgccagctcct
gaactgaacattcccgaatctttcagtgtttccaaagaacagggagtgtatgcacagcct
ttgccttcaccgtcaccttcagatcgcattataagtaccattgtagaaccttcattgact
accaaagacgcagtggataaatatcagttgatctcagaggagctggaatctcttatagcg
aaagatgctaaagaagctgaaattcagtctgttattggcgaggttcctggggtgattctt
agatgcattagtcgggacgaggctgcattggctgtggctcagaaggtcttccaaggctta
tatgaaaatgtcgcaaacactgctcatgttaatgctcatcttgccatgttgactgccatt
cgtgatgccagcaagcttgtgttcaatcaactcactagttgggtaatatattctgacggg
gatagaaagttcaacaaagatattactattggcttaattcgcaaagagttgctgaacctc
gctgagtataatattcaaatggctaagcttcttgatgccggaaagaacaaggtggcaacg
gagtttgcaatctctctcatccaaacattggtggctagtgacaccagagttatatctgaa
cttcattctgttgttgatgtgttggctaagcttgcaacaaggcccgatgcacctgaggca
cttgtacaacttattgaaattgctaagaacccagctgggaaggacgatttaatcaaacaa
caaaaagacaaaaaggtgtctagtctgcctgtaacaagtagggatgacaccaatgttatg
gaatcttctgaacaagatcctgctgctttccaagagcaggtttctctgctatttgctgaa
tggtaccgcatatatgaactccctggtgtgaatgatcaattgtctgctcgttttgttctc
caactgcagcaaaatggtcttttgaaagcagatgatacatcagattgctttttccgccgt
ctgctggatattgctgtatcacactgcatctcttctgagggcgctgttcaatctcatcaa
caatcacagacattatcttttcttgcaattgatatgtatgcatcacttgttttcacaata
ctcaagtactctgctgaccatggatcaagcaagctgtcacttttgtcgaaggtgttaaca
gtgactgtgagattcattcaaaaggatgccgatgataagaaaacatcattcaaccctagg
ccgtattttaggctattcattgattggctgcttgatcttaattctcttgattcagtcttc
gaaggtgcaaattttcaggttttgacagctctagctacttcttttcatgcactacagcct
ttgaaagttcctgcattcagctttgtatgggttgagctagtaagccacagaagtttcatg
ccaaaactactgagtggaagtctccaaaaggggtggccatatttccaacggttgctcgta
gacttgttccagttcatggaacctttcttgagaaatgctgaacttgctgaaccgattcgt
tttctgtacaaaggcacactgagggttcttttagtgctgcttcatgattttccggagttc
ctttgtgattatcattttagtttctgtgatatcattcctccaagctgcattcagatgcga
aatattgtgctcagcgcgttcccacgcaacatgaggctacccgacccttccactcccaac
ctaaagattgatctgctagctgagattagtcagtcaccgcgcattttatcggaggttgat
gcggctttgaaagccaagcaaatgaaaactgacgtggacgagtatctcaagacgaggcca
caagggacatcatttttatcagaattaaagcagaaactgcttctttcaccaagtgaagct
gcaagggccgggacccgatataatgtgcctttgatgaactcccttgttctctatgtcgga
atacaggcaatcatgcagcagcaggcgagaacacctcatggacaaacaatggcaagtaat
gcaatctttttagtgggtgctgctttggacatattccaaacattaatattggagctagaa
aacgaagggcgttacctcttcttgaacgcgattgctaaccaattgcgttatcccaacaac
cacacacattacttctcattcatccttctttacttgttctccgagtcaaaccaggaggca
atccaggaacagatcactagggttctattggagcggttgattgttaaccgaccacaccct
tgggggcttctaattactttcattgagcttatcaagaacccgagatacaacttctggagc
cggtctttcacaaggtgtgctcctgaaattgagaagctttttgaatcggtgtcgagatcg
tgtggagggcctaagcccgtggatgacggtgtggttgctggaggcatagctgatacgctg
cactag
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