Bidens hawaiensis: 143584384
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Entry
143584384 CDS
T11418
Name
(RefSeq) tetratricopeptide repeat protein SKI3-like
KO
K12600
superkiller protein 3
Organism
bhw Bidens hawaiensis
Pathway
bhw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bhw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
143584384
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bhw03019
]
143584384
Messenger RNA biogenesis [BR:
bhw03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
143584384
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Other DBs
NCBI-GeneID:
143584384
NCBI-ProteinID:
XP_076922571
LinkDB
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Position
Unknown
AA seq
1171 aa
AA seq
DB search
MDAEKDSQDDCFMKLSEAVATNPDDPSAHFNLGLLLWDRIGEESKQKAAEHFVIAAKLNP
QDANAFRYLGHYYSKVSVDTQRALKCYQRAVTLSPQDSESGESLCDLLDKDGKESLEVAV
CREASGKSPRAFWAFRRLGFLQVHQKKWSEAVQSLQQAIRGYPTSADLWEALGLAYQRLS
MFTAAIKSYGRAIELEESRVFSLVESGYVFMMIGSHRKGVELFQQALQISPENLAAHYGL
GCALLELSKECISAGAFRWGASVLEEASKVVKAGTYLGKNVSCMWKLHGDIQISYAKCYP
WMDENPALETDKKALSASINLWKNSCLSAALSAKHSYQQSLRLAPWQANIYTDIAITIDV
INSFKDVQKHDLIQRELPEKMILGGLLLEGCNNEFWVALGCLSHHVEVKQHAFIRSLQLD
VSLAVAWAYLGKLYRKQSEKNLAQQAFDRARSIDPSLALPWAGMSADMSIRALKPDEAYD
CCLRAVQILPLPEFQMGLAKLALLSGQLSSSEVFGPIRQALHHAPQYPEAHNLLGLVCEA
RGDYLSAITSFRLARCAVNISSGDTEKLHDITINLTRAYCKAGKANEAVQECEELKKKGV
LDWEGLHIYALSSWQLGKKDQALSVVRILAARVKSLEPNLASTSITFICRFLYYISGRES
VITSILKMPKNLFESSKVSFVVTAIHILDQSNQLEAVVSSSRSSLLSQDQITGMHFLITL
SKLVKNSSEGCLGIQNGLYHLKKTLHKYPNSYMLRNFLGYLLVSSNERKDTHLSTRCFTV
RCTTAECPEEGLKRSPEILGACAVACYTTASLNHKHSFPTCGDQSPHQHGSLKLLQRWYH
QEPWNRNARYILILNYMQKACEERYPQHIRTGLERLTSLAISDESHDYRRFQLLICASEI
NLQSGNITGSINHAKNASKIPVPDGYLFFAHLLLCRAYAVENNRARLLEEYTRCLNLKTD
YHIGLIGLKYIECYYGLEEANAGVIELKFEECSKDIKYSWNVWMAVLKLVQGLVAVRNRN
FVGAEESFAQACSLNGSESCLFLCHGAVCMELAKQQCNSDYLLLATGSLKKANDMCGARL
PILQLLLAQAEASLGYKDQWERYLQLEWSTWPPEMRPSEIFLQMHLLLGPLDSGMNSLRT
KQYQKNPLRWLLQAIHLNPSCSRYWKALQNL
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
atggatgctgaaaaggacagtcaagatgactgtttcatgaagttaagtgaagctgtagcc
accaatccagatgacccgtcggcccattttaatctgggtttgttgttatgggatcggatt
ggagaagaatccaagcaaaaggcagcagaacattttgtgattgcagcaaagctcaacccg
caagatgcaaatgcttttaggtatttgggtcactattatagcaaagtttcagttgatact
caaagagctctcaagtgttatcagagagctgttactctctctcctcaagactctgaatca
ggggaatcgttgtgtgatttgttggataaagatggaaaagagagtttggaggttgctgtc
tgtcgtgaagcttcagggaaatctcctagggcattttgggcatttcgtaggctaggtttt
ctacaggttcatcagaagaaatggtcggaagcagttcaaagtcttcagcaggccatccga
ggatatcctacgtctgctgatttatgggaggctttaggtcttgcctatcaacgattaagc
atgttcacagctgctattaagtcatatggccgagctatcgagttggaggagtcacgtgtg
ttttcattggttgagagtggatatgtcttcatgatgatcggttcacatagaaagggagtt
gagttgtttcaacaagctttacaaatatcacctgaaaatttagctgcacactatggactt
ggatgcgcacttcttgagttatcaaaggaatgtataagtgcaggtgcgtttagatgggga
gcttcagtattagaggaggcgtcaaaagttgtgaaggctggtacatatttgggcaaaaat
gtttcatgcatgtggaagttgcatggtgatattcagatttcatatgcaaagtgttaccca
tggatggatgaaaaccccgccttagaaacagataaaaaagcgttgtctgcttcaataaat
ttatggaaaaattcctgcttatcagctgcactgagcgctaaacactcctatcaacagtct
ctgcgtttggctccatggcaagctaatatctacacagatattgctatcactatagatgta
ataaactcgtttaaggatgttcagaaacatgatcttattcaaagggagttgcctgagaaa
atgattctaggtggattattacttgagggttgcaataatgagttttgggttgcattggga
tgcttatcacatcatgtggaggtgaaacaacatgcttttatcaggtcgttgcagttggat
gtgtcattagctgttgcatgggcatatcttggcaagctttacagaaaacaaagtgaaaag
aatttggcccaacaagcatttgatcgggccaggagtattgatccttctcttgcattaccg
tgggctggcatgtctgctgatatgtccattagggcgcttaagccagatgaagcttatgat
tgctgtttacgggctgtgcagatactaccacttccagaatttcaaatgggtcttgcaaag
cttgctttgctttctggtcaactttcgtcttcagaggtctttgggcccatacgtcaggcc
ttgcatcatgcacctcaatatcctgaagcccacaatcttttagggcttgtttgtgaggca
agaggtgattatctctctgccattacctcttttaggttagcacgttgtgcagtcaacatt
tcttctggtgacactgaaaaacttcatgatattacaattaacttgacgagggcatactgt
aaggccggcaaagctaatgaagcagtacaagaatgtgaagaattaaagaagaaaggtgtt
cttgattgggaaggtttgcatatatatgctttatcttcatggcaacttggcaaaaaggat
caggctttatctgtagtgaggattttagctgcacgtgttaaatcattggaaccaaacctg
gcttctacatccataacttttatatgtagattcctttattatatttctgggcgagaatca
gttattacaagcattctcaaaatgcccaagaatttgtttgaaagctccaaagttagtttt
gtggtcactgctattcatattctggatcaaagcaatcagcttgaagcagttgtttcaagt
agtcgatcttcactattaagtcaagatcagattactggaatgcattttctgataacgctt
agtaaattggtaaaaaatagctcagagggttgcttggggattcagaatggattataccac
cttaagaaaactctccataaataccctaacagttatatgctaaggaattttctcggatat
ttattagtatctagtaatgaacggaaagatactcatttgtctactagatgctttactgtg
aggtgcaccacagcagagtgtccggaagaaggtctaaaacgctcacctgaaattcttggt
gcttgtgcggtagcttgctatacaacagcgagtttaaatcataaacactcttttcctacc
tgtggagaccaatcaccacatcagcacggatcacttaaactgctgcaaaggtggtaccat
caagaaccatggaacagaaacgcaagatacatattaattctcaactatatgcagaaggct
tgtgaagaaagataccctcaacatatacgcacaggactcgaaagattaacaagccttgcc
atttcagacgaatcccatgactaccgaagattccaacttttaatttgtgcttctgaaata
aatctccaaagtggtaacattactggcagcataaatcatgctaaaaacgcctcaaagatt
cccgtccctgacgggtatcttttctttgcacatttgctgttatgccgggcctacgctgtt
gaaaataaccgggctcgtttacttgaggagtacacgagatgtttgaatttgaaaaccgat
tatcatatcggtttgattggtttgaaatacattgaatgctattatgggttagaagaagca
aatgcgggtgtaattgaattaaagtttgaggaatgttcaaaagatatcaaatattcttgg
aatgtttggatggcagtattgaaactagttcagggtttggttgctgttaggaatcgaaat
tttgttggtgcagaagagtcgtttgcacaagcgtgttcattaaatggttctgaaagctgt
ctgtttttgtgtcatggtgccgtatgtatggaacttgctaaacaacaatgcaattcagac
tacttgcttcttgcaactgggagtttaaagaaagctaatgacatgtgtggggcccgctta
cctatcttgcaactgttactagcacaagccgaagcgagtctaggatacaaagatcaatgg
gaacgataccttcagcttgaatggtcaacatggcctccggagatgaggccgagtgagatc
tttcttcaaatgcatttgcttttaggaccgttggatagcggtatgaattcattaagaaca
aaacagtatcagaaaaacccgttaaggtggcttcttcaagcgattcacttgaatccgtct
tgttcgagatattggaaagctttacagaatttgtaa
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