Bidens hawaiensis: 143590542
Help
Entry
143590542 CDS
T11418
Name
(RefSeq) uncharacterized protein LOC143590542 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
bhw Bidens hawaiensis
Pathway
bhw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bhw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
143590542
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bhw03019
]
143590542
Messenger RNA biogenesis [BR:
bhw03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
143590542
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
143590542
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Other DBs
NCBI-GeneID:
143590542
NCBI-ProteinID:
XP_076927108
LinkDB
All DBs
Position
Unknown
AA seq
2423 aa
AA seq
DB search
MIPLAQRLSSEFRLLFESLNESNYDSVTRELFQYVDYETEGSILLLETCLNYFNVYEKDL
RSAPLEPVVASLFRKLLERPQFSTVFSMAVRPTAITEDFLDNLSVALQLTAYEKLGFGLA
LAESENDIRTAGRNFCMKQIEEFCSTNGSLHTTDHVQDVLLFLNKSEVLSKHVDSFMELL
SLVQFDKDSGFILAPLLLDEFHDSKLLRCMDFLNEGNENEFDDILAEMEKEMNMADMLKE
LGYKCTLDVSLCKDLLSSFSPLTEATVARILGTIIRSDTGLQDHENAFSTFYSAIGKGTL
SDMTSLNSWNTDVLIDSIKQLAPGISWITVIENLDHDGFYVPDEAAFSQLISCYRRASQD
PFPLAAVCGNVWRNTEGQLSFLKYAVSVPPEVFTFAHCKRQLANVDAVNSHKYQSGHANH
AWLCLDLLEVLCQLAERGLAKSVRSLLEYPLKHCPEVLLFGMAHVNTPYNFLQLEVSLAV
VPVILKDASVGGIMLHIWHVNPPFLLRALNDALNIDSDNITRVLDLCQDLKIISPVLDMV
PMPLGIRLASLAFRKELIDLEKWLTSNLTTYRDTFFEECLRFLKEVVSGAQESSNRLHNP
GNIWSLYMETTPVFLKVLQAHANLLSSDQLSKELEKLRLKVTSNSSRMRNNGGPDSSTPE
VYAEDIEAEVNTYFQQMFSAEMTVEAVVDMLARFKESPEKREQSVFECMIANLFEEYKFF
NRYPERQLKLAAVLFGKLINTQLVTHLTLGIALRAVLDALRKPADSKMFVFGTKALETFL
DRLIEWPQYCQHILQISHLRGNQPELVAFIERLLVRNSPGYSESDAGYTATADQHHNSVP
QPKTEVAGSSFPVIGSGTSHLGSQLSSPIQLQQRNQSYLDERHRASVPSSIYMKPNLTTT
GQTSVALANEPVNIPKVTATLVNDPANMPKPQSVVSSSAALASSPAFVRPARAVTSAKFG
SALNIETLVAAAERRETPIEAPPSETQDKISFIINNLSNANIESKAKEFTEILKEPYYAW
FAQYMVMKRASIEPNFHDLYLKFLEKANSKALNKEIVQATYENCKVLVGSELIKSSSEER
SLLKNLGGWLGKITIGRNQVLRAREIDPKALIIEAYEKGLMIAVIPFTSKILESCSNSIA
YQPPNPWTMGVLGLLAEIYAMPNLKMNIKFEIEVLFKNLGVDLKEVTPSSLLIDRVREVE
GNPDFSNKDVGPAQQPLVAEVKSNPIATPNQVELPVEIGSSSHLGGRSRILSQYAAPHHL
PAVTLSEDEKMAALGLSDKLPSAQGLRHAQMPFSVGQSTLQLPSSSMDQDVIINPKLQAL
GLHIPFQSVLGISMELAIKEIVTGIVQRSVSIATQTTKELVLKDYAMESDESRIHSAAHL
MVASLAGSLAHVTCKEPLRGSISSQLRSNLQALNVNIASELLEHAIQLVTNDNLDLGCAF
IEQAATEKAVQTIDSELAPQLSIRRKQRDGVGGLGAAFFDNSLYTQGYVGVLPEALRPKP
GRLSHSQQRVYEDFVRLPWQNQSNQNSASVPLGPSPAPPPGSGALHRGYGSGSGSVSVTG
QLNPGMFSSGINPVAHSLDSEDMEPSSVKLLGSSSMHSSMGGGMGPQNVESFLSSFSSAP
APELNIPESSSVSKEQGVYAQPLPSPPPSDRIISTTVEPSLTTKDAVDKYQLISEELESL
IAKDAKEPEIQSVIGEVPGVILRCISRDEAALAVAQKVFQGLYENAANTAHVNAHLAMLT
AIRDVSKLVFNQLTSWVIYSDDDRKFNKDITIGLIRKELLNLAEYNIQMAKLLDAGKNKV
ATEFAISLIQTLVASDTRVISELHSVVDVLAKLATRPDAPEALVQLIEIAKNPAGKEDLI
KQQKDKKVSNLPVTSRDDTNVMESSEPDPAAFQEQVSLLFAEWYRIYELPGVNDQLSARF
VLQLQQNGLLKADDTSDRFFRRLLDIAVSHCISSEGAVQSHQQSQTLSFLAIDMYASLVF
TILKYSADHGSSKLSLLSKVLTVTVRFIQKDADDKKTSFNPRPYFRLFIDWLLDLNSLDS
VFEGANFQVLTALATSFHALQPLKVPAFSFVWVELISHRSFMPKLLSGNVQKGWPYFQRL
LVDLFQFMEPFLRNAELAEPVRFLYKGTLRVLLVLLHDFPEFLCDYHFSFCDIIPPSCIQ
MRNIVLSAFPRNMRLPDPSTPNLKIDLLAEISQSPRILSEVDAALKAKQIKSDVDEYLKT
RPQGTSFLSELKQKLLLLPSEAARAGTRYNVSLMNSLVLYVGIQAIMQQQARTPHGQSMA
SNAIFLVGAALDIFQTLILELENEGRYLFLNAIANQLRYPNNHTHYFSFILLYLFSESNQ
EAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPRYNFWSRSFTRCAPEIEKLFESVS
RSCGGPKPVDDGVVSGGIADTLH
NT seq
7272 nt
NT seq
+upstream
nt +downstream
nt
atgattccgttggcgcagaggctatccagtgagttccggctgctgttcgagagcttgaac
gaatccaattacgactccgttactcgcgaactgtttcagtatgtcgattacgaaacagag
ggaagcattttgcttcttgagacctgcttgaactacttcaatgtttatgaaaaggatttg
agaagtgctcctttggaacctgtagttgcttcactttttagaaaattgttggaaaggcca
cagtttagtactgtattctcaatggcagtaaggccgacagcaatcactgaagactttttg
gataatttatctgttgctttacagttaactgcatatgagaaacttggatttggtcttgct
ttggcagagtcagaaaatgacatcagaacggctggaagaaacttctgtatgaagcagatt
gaggaattttgctctaccaatggctctctgcataccactgaccatgttcaggatgtattg
ctgtttcttaataaatctgaagtcctgtctaaacacgtggattcatttatggaattgtta
tctctggttcagtttgataaggattctgggtttatcttagctcctctccttttggatgag
tttcatgactccaagttattaaggtgtatggattttctcaatgaaggaaatgagaatgaa
ttcgatgatattttagcagaaatggagaaggagatgaacatggcggatatgctgaaagaa
ttgggttataagtgcacattagatgtatcactttgcaaagatttgctatcttcgttttca
cctctaactgaagccactgtcgctaggatacttggcactattatccgatctgatacgggt
cttcaggaccatgaaaatgcattttctacattttattctgctattggtaaagggactctg
tctgatatgacttcattgaactcctggaacactgatgtcctgatagattcaattaagcag
cttgctcctgggatcagctggattactgtaattgagaatcttgatcacgacggtttctac
gtcccagatgaggcagcattttcacaattgatttcttgttacagacgtgcatcccaggat
ccatttccactggctgctgtttgtggcaatgtttggagaaacactgagggccagctgtcc
tttctgaagtatgctgtctctgtaccacctgaagtatttacatttgcacactgcaaaaga
caattggcaaatgttgatgcagtcaatagtcataagtatcaatctggtcatgcgaatcat
gcgtggttatgccttgaccttctggaggtcttgtgccagctagctgagagaggcctggca
aagtctgttcgatcactgcttgaatatcctcttaagcattgccctgaagtgctgctattt
gggatggcacatgttaatacaccatataattttcttcaacttgaagtttctttggctgtt
gttcctgtgatacttaaagatgcttctgtgggtggcattatgctccatatttggcatgtt
aaccctccttttttgttaagagctctcaatgatgcactcaacatagattcagataatatc
accagagtcttagatttatgtcaagatttaaagattatatctcctgtattggatatggta
cctatgcctttaggtattaggcttgcttccttggcatttcgaaaagaactcatagatctg
gagaaatggctgacctcaaatctaactacttatagagatacattctttgaggaatgcctc
cggttcctgaaggaggtggtttctggtgctcaggagtcttcaaatcggttgcataatcca
ggaaacatctggagtctttatatggaaacaactcctgtgtttttgaaggttcttcaagcg
catgcaaacttactatcctcggaccagctttctaaggaattggaaaaattacgtttgaag
gttacaagcaacagttcaaggatgaggaacaatggtggtcctgattcatcgacacctgaa
gtatatgcagaggatatagaggcagaggtcaacacttatttccagcaaatgttctctgcc
gagatgactgttgaagcagtggttgatatgctagctcgattcaaggaatctcctgagaaa
agggaacaatccgtgtttgagtgcatgattgccaatctgtttgaagagtacaagttcttc
aacagataccctgagagacaactaaagctcgctgcagttctttttgggaagcttattaat
actcaacttgtgacccatctgacacttggcattgcgttacgagctgttttggatgcactg
cgtaaacctgcagattcaaaaatgtttgtttttggtacgaaggctttagagacgtttttg
gatcggctgattgaatggccacagtactgtcaacatatcttacaaatttcacatctacgt
ggcaatcaaccagagcttgttgctttcattgaaaggctgcttgttagaaattcaccaggc
tactcagaatcagatgcaggttacactgctactgctgaccaacaccataattctgtccca
caaccaaagacagaggtggcgggttcatcttttcctgtgattggatctggtacttcgcat
cttggttctcagttatcttctccaattcagcttcagcaaaggaaccagagttatttagat
gagagacacagagcttctgtaccttcctctatctatatgaagccaaacctaactaccaca
ggacaaacatcagttgctcttgcaaacgaacctgttaacatccccaaggtgactgccacc
cttgtaaacgatcctgccaacatgcccaagccacaaagtgtagttagttcgtcagcagcg
ttggcttcctcacctgctttcgttcgtcctgctcgagctgttacttcagcaaagtttggc
tctgctttaaatattgaaacacttgttgctgctgctgaacggagagaaactcccatagag
gctccaccatcagaaactcaggataaaatatcttttattatcaacaatttgtcgaatgcc
aacattgaatctaaagccaaggagtttactgaaattttgaaagaaccgtactatgcgtgg
tttgctcagtacatggtcatgaaaagagcaagtatcgaaccgaattttcatgacttgtac
ttgaagttcctggagaaagccaactcaaaggctcttaacaaagagattgttcaagccacc
tatgagaattgcaaggttcttgtaggatctgagcttataaagtccagttcagaagaacgc
tctctgctaaagaatcttggaggctggcttggaaagataacaattggtagaaaccaagta
ttgcgtgctagggagattgatccaaaggctttaattattgaggcatatgaaaagggttta
atgattgcagtgattccatttacctctaagatattggagtcatgttcaaacagtatagca
tatcaaccgcctaatccttggaccatgggagttctaggattacttgctgaaatttatgca
atgccaaatctaaaaatgaatatcaagtttgaaattgaggtattgttcaagaatcttggt
gtggatttgaaggaagtaacgccatcatcccttctaattgacagagtgagagaagttgag
gggaatcctgatttttcaaacaaagatgttgggccagctcaacaaccattggttgcggaa
gttaaatctaatccgatagctactccaaatcaagttgaattaccggttgaaattggtagt
tcatctcatttgggtggtcgttcacgaatactatctcagtatgctgctccacatcatctt
cctgctgttacattaagtgaggatgagaaaatggcagctttaggcttgtctgataagctt
ccatctgcccaaggacttcgacatgcacaaatgcccttttcagttggtcagtcgactttg
cagctaccatcatcaagtatggatcaagatgttattatcaaccctaagctacaagcttta
ggcctgcatatcccctttcagagtgtgcttggaatttccatggaactggctattaaagaa
atagttactggtattgttcagcgcagtgtttcaattgcaactcaaacaacaaaagaactc
gtgctaaaggactatgctatggagtcggatgaaagccgtatacacagtgcagcacacttg
atggttgcaagtttagctggaagtctagctcatgtcacgtgcaaggaacctcttcgcggt
tcaatatcaagtcagctaagaagcaatcttcaggccctgaatgtgaatattgcaagtgaa
ctgcttgaacatgcaattcagcttgttacaaatgacaatcttgacttgggctgtgcgttt
atcgagcaggctgcaaccgaaaaggctgtacaaacgatagatagtgaacttgctcctcaa
ctttcgataagaaggaaacagagagacggggttgggggccttggggccgccttttttgat
aatagtctgtatacacaaggttatgtaggcgttttaccagaagcccttcgtcctaaacct
ggccgattatcccattctcaacaacgagtctatgaggattttgttcggttaccatggcaa
aatcagtctaaccaaaattcagcatctgtacctcttggtccttcaccagcgccaccacca
ggaagtggtgctttacaccgaggttatggttcaggctcaggttcagtttctgttacaggt
caactgaaccctggaatgttctcatctggtatcaatcctgtagcacactccttggattct
gaagatatggagcctagctcagtaaaacttcttggcagttcttccatgcatagctcaatg
ggcggtggtatgggtccacaaaatgttgaatcctttctatcttcattttcttcggcgcca
gctcctgaactgaacattccagaatcttccagtgtttctaaagaacagggagtgtatgca
cagcctttgccttcaccgccaccttcagatcgcattataagtaccactgtagaaccttca
ttgactaccaaagacgcagtggataaatatcagttgatctcagaggagctggagtctctt
atagcgaaagatgctaaagaacctgaaattcagtctgttattggcgaggttcctggggtg
attcttagatgcattagtcgggatgaggctgcattggctgtggctcagaaggtcttccaa
ggcttatatgaaaatgcggcaaacaccgctcatgttaatgctcatcttgccatgttgact
gccattcgtgatgtcagcaagcttgtgttcaatcaactcactagttgggtaatatattct
gatgacgatagaaaattcaacaaagatattactattggcttaattcgcaaagagttgctg
aacctcgctgagtataatattcaaatggctaagcttcttgatgccggaaagaacaaggtg
gcaacggaatttgcaatatctctcatccaaacattggtggctagtgacaccagagttata
tccgaacttcattctgttgttgatgtgttggctaagcttgcaactaggcctgatgctcct
gaggcacttgtacaacttattgaaattgctaagaacccagctgggaaggaagatttaatc
aaacaacagaaagacaaaaaggtgtctaatcttcctgtaacaagtagagatgacaccaat
gttatggaatcttctgaaccagatcctgctgctttccaagagcaggtttcgctgctgttt
gctgaatggtaccggatatatgaactccctggtgtgaatgatcaattgtctgctcgtttt
gttctccaactgcagcaaaatggtctgttgaaagcagatgatacatcagatcgctttttc
cgccgtctgttggatattgctgtatcacactgcatatcttcagagggcgctgttcaatct
catcaacaatcacagacattatcttttcttgcaattgatatgtatgcatcacttgtcttc
acaatactcaagtactctgctgaccatggatcaagcaagctgtcacttttgtcgaaggtg
ttaacagtgactgtgagattcattcaaaaggatgccgatgataagaaaacatcattcaac
cctaggccgtatttcaggctattcattgattggctgcttgatcttaattctcttgattca
gtcttcgaaggtgcaaattttcaggttttgacagctctagcaacttcctttcatgcgcta
cagcctttgaaagttcctgcattcagctttgtatgggttgagctaataagccacagaagt
ttcatgccaaaactactgagtggaaatgttcaaaaggggtggccatatttccaacggttg
ctcgtagacttgttccagttcatggagcctttcttgagaaatgctgaacttgctgaaccg
gttcgttttctgtacaaaggcacactgagggttcttttagtgctgcttcatgatttcccg
gagttcctttgtgattatcattttagtttctgtgatatcattcctccaagctgcattcag
atgcgaaatattgtacttagcgcgttcccacgcaacatgcggctacccgacccttccacc
cccaacctaaagattgatctgctagctgagattagtcagtcaccgcgcattctatcggag
gttgacgcggctttgaaagccaagcaaataaaaagtgacgtggacgaatatctcaagacg
aggccgcaagggacatcatttttatcagaattaaagcagaaactgctgcttttaccaagt
gaagctgcaagggccgggacccgatataacgtgtctttgatgaactctcttgttctttat
gtcggaatacaggcaatcatgcagcagcaggcaagaacacctcatggacagtcaatggca
agtaatgctatctttttagtgggtgctgctttggacatattccaaacattaatattggag
ctagagaacgaagggcgttacctcttcttgaacgcgattgctaaccaattgcgttatccc
aacaaccacacgcattacttctcattcatccttctttacttgttctctgagtcaaaccag
gaggccatccaggaacagatcactagggttctattggagcggttgattgttaaccgaccc
cacccttgggggctgttaattacttttattgagcttatcaagaacccgaggtacaacttc
tggagccggtctttcacaaggtgtgctcctgaaattgagaagctctttgaatcagtgtcg
agatcatgtggagggcctaagcccgtggatgacggtgtggtttctggaggcatagctgat
accctgcactag
DBGET
integrated database retrieval system
