Bidens hawaiensis: 143612873
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Entry
143612873 CDS
T11418
Name
(RefSeq) uncharacterized protein LOC143612873
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
bhw Bidens hawaiensis
Pathway
bhw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bhw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
143612873
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bhw03019
]
143612873
Messenger RNA biogenesis [BR:
bhw03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
143612873
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
143612873
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Other DBs
NCBI-GeneID:
143612873
NCBI-ProteinID:
XP_076942862
LinkDB
All DBs
Position
Unknown
AA seq
2398 aa
AA seq
DB search
MIPLAQRFSTEIRLLLESLNESNSDSVFRELTQFVDYGTEGNILLLETCLHHFNVLEKDL
KSTLLEPVLASIFRKLLEKPQFSTVFSMSVRPEVITEEFLDNFSAALQLSAYEKLGFGLA
LTDSENNDIRMAGRNFCMRQIEELCATNVSLKTADFVQDVLLFLNKSEVLSKHVDSFMQL
LSLVQFDEDSEFILAPFLSEELQDSKLLRNLDFLNEGNENEFDAILAEMEREMNMADMLK
ELGYKCTLDVSLCKDLLSSFSPLTEVTVARILGTVIRSDASFQDHENAFYTFYSALGRGN
LSDMSSPNFWNTDVLIESIKQLAPGINWTTVAENLDHEGFYVPDEAAFSLLISCYKYASQ
DLFPLAAVCGNVWRNTEGQLSFLKYAVSAPPELFTFAHCKRQLANVDAVYSQKLQSGHEN
HAWLCLDLLEVLCQLAERGLAKSVRSLLEYPLEQFSEVLLFGMAHVNTPYNFLQHEVSLA
VVHVMLKDASAGGILLNLWRVNPPYLLRALNDAINIDPDNIIRVLDLCQELKITSPVLDM
VPMFFGIRLAALASRKDLVDLEKWLSSNLSTYKDTFFEECLRFLKEVEYNAQESSNRLHN
SGNIWSLYMETTPVFTKVLQAHTDLLSSNQLSKEMERLNLKLTNNNSRMRNNGGPDSSTS
EVYADDIETEANSYFHQMFSAQLSVDAMIQMLARFKDSSERREQSIFECMIANLFEEYKF
FIKYPDRQLRIAAALFGLLIKNQLVTHLTLGIALRAVLDALRKPADSKMFGFGTKALEKF
LDRLIEWPQYCQHILQISHLRGTHPELVAFIERALARNSSGHPDPDAAAYNPAADQHQQP
NVEVYVYVSGSSFPLIGSGGTQLGSQISSPIQLQQRNQSYLDERNRASLASSYMKSNLTT
TGQASVAPPNDPVNIPKPHSVVSSSAALASTPAFTRPSRAVTSARFGSALNIETLVAAAE
RRETPIEAPPSEIQDKISFIINNLSAANIEAKAKDFTEVLKEQYYAWFAQYMVMKRASIE
PNFHDLYLKFLEKANSKRLNKEIVQATYENCKVLLGSELIKSSSEERSLLKNLGGWLGKI
TIGRNHVLRANQIDPTALVIEAYEKGLMIAVIPFTSKILESCSNSLAYQLPNPWTMGVLA
LLAEIYAMPNLKMNLKFEIEVLFKNLNVDLKEVNPSSHLIDKVREIEGNPDFSTKDVGTA
QQPMAGEVKSNILSINQVELPVEVGSSTHSGGHSRILSQYAAPHHLPPVTLSEDEKMAAL
GLSDKLPSAQGLLQAQLPFSVGQLPLSSMDQEVIINPKLQALGLHVPFQRVLGYTMELAI
KEIVSSIVQRSVSIATQTTKELVLKDYAMESDESRIHSAAHLMVASLAGSLAHVTCKEPL
RGSISSQLRNNLQALNLNVATELLEHAVQLVTNDNLDLGCALIEQAATEKAVQTIDSELA
PQLSIRRKHREGPYYDTSLYTQGHVGVLPEALRPKPGRLSHSQQRVYEDFVRLPWQNQSN
QNSNAVPLGPSGPPSGALHRGYGSGSVSGQMNLDIFSSGINVAQSLDAEDMEPTSVKLLS
GSSVHCSMGVGMGLHNFENEAALSSFSSVSAPEPHIPEASSVPKDPSVFAQPLPSPSPLA
SDRIISTSTALTTKDAVDKYQFISEELESLVAKEAKEAEIQAIVGEVPGVILRCISRDEA
ALAVAQKVFQGLYENAANTSHVGAHLAMLAAIRDVSKLVFNQLTSWVIYSDDERKFNKDI
TVGLVRRELLNLADYNNHLAKLLDAGKNKVATEFAISLIQTLVASDARVISELHSVVDVL
AKLATTPDAPEALQQLVEVARNPAAGKDDLNRQQKDKKAANHVVASKDETSVLESSEPDP
AAFQEQVSLLFAEWYKIYELPGVNDQLTARFVLQLQQNGLLKADDTSDRFFRRLLYIAVS
HCISSEGAVQSHQQTQALSFLAIDMYASLVFSILKFSATEHGSSKMSLLLKVLTVTVRFV
QKDAEEKKTSFNPRPYFRLFIDWLLDLNTLDPVFEGANFQVLTALATSFHALQPLKVPAF
SFVWLELVSHQSFMPKLLSGNGQKGWPYFQRLLVDLFQFMEPFLRNAELGEPVRFLYKGT
LRVLLVLLHDFPEFLCDYHFSFCDIIPPSCIQMRNIVLSAFPRNMRLPDPSTPNLKIDLL
AEISQSPQILSEVDAALKAKQMKNDVDEYLKTRPQGTSFLSELKQKLLLSPSEAARAGTR
YNMPLMNSLVLYVGMQAILQLQARTPHGQSMASNASLAIFLVGAALDIFQTLIMELETEG
RYLFLNAVANQLRYPNNHTHYFSFILLYLFSESNQEAIQEQITRVLLERLIVNRPHPWGL
LITFIELIKNPRYNFWSRSFTRCAPEIEKLFESVSRSCGGPKPVDDGVVAGGISDTMH
NT seq
7197 nt
NT seq
+upstream
nt +downstream
nt
atgattccattggcgcaacgattctcgactgaaatccggctgttgctcgagagcctcaac
gaatccaattccgattccgtttttcgcgaactcactcagtttgttgactatggaactgag
ggaaacattctgcttttggagacctgcttgcaccactttaatgtgcttgaaaaagacttg
aaaagtactcttctggagcctgtacttgcttcaatttttagaaagttgttggaaaagccg
cagtttagtactgtattctcaatgtcagtaaggccagaagtaatcactgaggaatttctg
gataatttttctgctgctctacaattatcggcatatgagaaacttggatttggtcttgct
ttgacggattcagagaataatgacatcagaatggctggaagaaatttttgtatgaggcag
attgaggaattatgtgctaccaatgtctctttgaagactgctgactttgttcaggatgta
ttgctgtttcttaataagtctgaagtcctttctaaacatgtggactcgtttatgcagttg
ttatctctggttcagtttgatgaggattcagagtttattttagctccttttctatcagaa
gaactacaagactctaagctattgaggaatttggattttctgaatgaaggcaatgagaat
gaatttgatgctatcctagcagaaatggagagggagatgaacatggctgatatgctgaaa
gaattgggttataagtgcacactagacgtgtcactatgcaaagatttgttatcttctttc
tcacctctaaccgaagtaactgtcgctaggatactcgggacagttatccgatctgatgcc
agctttcaggaccatgaaaatgcgttttacacattttattctgctcttggtagagggaat
ctgtctgatatgtcctcgccgaacttttggaacactgatgtccttattgaatcaattaag
cagcttgctcctggaatcaactggaccactgtggctgaaaaccttgatcatgaaggtttt
tatgttccagatgaggcagcattttcactactgatttcttgttacaaatatgcatcacag
gatctgtttccattggctgctgtttgtggcaatgtttggagaaacactgaaggacaactg
tcttttctcaagtatgctgtttctgcgccacctgaactattcacgtttgcacactgcaaa
agacaattggcaaatgttgacgcagtctatagtcagaagttgcaatctggtcatgaaaat
catgcatggctatgccttgaccttttggaggtcctgtgccagctagcagagagaggcctt
gcgaaatctgttcgatcgctgcttgaatatcctcttgaacaattctctgaagtgttgcta
ttcggaatggcccatgttaatacaccatataatttccttcaacatgaggtttctttggct
gttgttcatgtgatgctaaaggacgcgtctgctggtggcattttgcttaatctttggcgt
gttaacccaccctatttgttgagagctttaaatgatgcaataaacattgatccagataac
atcataagggtcttggatttgtgccaggagttaaagattacatctcctgtattggatatg
gtacctatgttttttggtatcaggctggctgctttggcttctaggaaagatcttgtagat
ctggagaagtggctgagctcaaatctaagtacttacaaagacactttctttgaggagtgt
cttcgattcttgaaggaggtggaatataatgctcaggaatcctcaaatcgattacataat
tccggaaacatctggagtttgtatatggagacaactcccgtgttcacaaaggttcttcaa
gcacatacagacttgctctcatctaaccaactttctaaggaaatggaaagattaaatttg
aagcttacaaacaacaattcaaggatgaggaacaatggtggtcctgattcatcaacatct
gaagtatatgcagatgatatagagacagaggccaactcttatttccatcaaatgttttct
gctcagttgtcggttgatgcaatgattcaaatgctagcccgattcaaggattcttctgaa
agaagagaacaatccatatttgagtgcatgatcgcgaatctgtttgaagaatacaagttt
ttcattaaataccctgacagacaacttagaatcgctgctgctctctttggtttgcttatt
aagaatcaactggtgacacacttgacacttggtattgccttacgagctgtgttggatgcc
ttgcgtaagcctgcggattccaaaatgtttggttttggtacaaaggctttggagaagttt
ctggaccgtctgattgaatggccacagtactgtcagcacatcttacaaatatcacatcta
cgtgggacccatcccgagcttgttgctttcattgaaagggctcttgctagaaactcatca
ggtcatccagatccagatgcggcagcctacaatcctgctgctgaccaacatcaacaaccc
aatgttgaggtatatgtttatgtgtcgggttcatctttcccgttaataggatctggtggt
acacaacttggctcacaaatatcttctccaattcagcttcagcagaggaaccagagttat
ttagatgaaagaaatagagcctctttagcttcctcctatatgaagtctaacttaactacc
acaggacaagcttcagttgctccaccgaatgatcctgttaatattcctaagccacatagt
gtagttagttcttcagcagcattggcttcaactcctgcttttactcgtccttctcgagct
gttacttctgcaaggtttggttctgcgctaaatattgaaacacttgttgctgctgctgaa
cgtagagaaactcctatcgaggccccaccatctgaaattcaggataagatttcttttatt
attaataatttatcagctgccaacattgaagctaaagcaaaagatttcacagaagtttta
aaagaacagtactatgcttggtttgctcagtacatggtcatgaaaagagcgagtatagaa
ccaaattttcatgacttgtacttgaagtttcttgagaaagccaactcaaaacgtctgaac
aaagagattgttcaagccacctatgagaattgcaaggttcttctagggtctgaacttata
aaatctagttcagaagaacgttcgttgctgaagaatcttggaggttggttgggaaagatc
actatcggtagaaaccatgttttgcgtgctaatcagattgatccaacggctttagttatt
gaggcatatgaaaagggtttgatgattgcagtgattccatttacctccaagattttagag
tcatgttcaaacagcctagcatatcaactgcctaatccttggaccatgggagttcttgca
ttacttgctgaaatctatgcaatgcctaatctcaaaatgaatctcaagtttgaaattgag
gtattgttcaagaatctaaatgtggacttgaaggaagtaaatccatcatctcatcttatt
gacaaagtgagggaaattgaaggaaaccctgatttttctaccaaggatgtcgggacagct
cagcaaccaatggccggagaagtgaaatctaatatattatctataaatcaagtcgagtta
ccagttgaagttggtagttctactcattccggtggtcattcacgcatattatcccagtat
gctgctcctcaccatctccctcctgttactttaagtgaagatgaaaagatggcagcttta
ggcttatctgataagcttccatctgctcaagggcttttacaagcacaattgcccttttca
gttggtcagctaccattgtcaagtatggatcaagaagttattatcaaccctaaactccaa
gctctcggtttgcatgtgcccttccagcgtgtgcttggatatacgatggaactggctatc
aaagaaatagtttctagcattgttcagcgtagtgtgtcaatagcaactcaaacaacaaaa
gaactagtcttaaaggactatgcaatggagtcagatgagagtcgtatacatagtgcagct
cacctgatggttgcaagtttagctggaagtctagctcatgtcacatgcaaggaaccactt
cgtggttcaatatcaagtcagctaagaaacaatcttcaggctctgaatttgaatgttgca
actgaactgcttgaacatgcggttcagcttgttactaatgataacctcgacttgggctgt
gcgctaatcgaacaggctgctactgaaaaggctgtacaaacaatagatagtgaacttgca
cctcaactttcaataagaagaaagcacagagaaggaccctattatgatacaagcctgtat
acacaaggtcatgtaggtgtgctaccagaagccctgcgccctaaacccggcagattatcc
cattctcaacaacgggtttacgaggactttgttcggttaccgtggcagaatcagtctaac
cagaattctaatgctgtaccacttggcccgtcaggtccacccagtggtgctctacaccgg
ggttacgggtcaggttctgtttcgggtcagatgaaccttgatatcttctcatctggtatc
aatgtagcacagtcgttggatgctgaagatatggagcctacttcagtaaaacttcttagt
ggttcatcggtacattgctcaatgggtgttggtatgggtttgcacaactttgagaatgaa
gcggctctgtcttcgttttcttcagtatcagctcctgaaccacacattccagaagcttct
agtgtccccaaagacccgagtgtatttgcacagcctttgccttcaccttcacctttagct
tcagatcgcattataagtacatccactgcattgactactaaagatgcagttgataagtat
cagttcatctcagaggagttggaatctttggtagcaaaggaagcgaaagaagctgaaatt
caggcaattgttggggaggtacccggggtgatccttagatgtattagtcgggacgaggct
gcattggctgtggctcagaaggtctttcaaggtttatatgaaaacgcagcaaacacctct
catgtcggtgctcaccttgccatgttagctgccattcgtgatgtcagcaagcttgtgttt
aatcaactaactagttgggtaatatattctgatgatgaaaggaaatttaacaaggatatt
accgttggcttagttcgcagagagttgctgaaccttgctgattacaataatcacttggcc
aagcttcttgatgccgggaaaaacaaggtggcaactgaatttgcaatatctctcatccaa
acactggtggctagtgacgcgagagtaatatctgaacttcatagtgttgttgatgtatta
gctaagcttgcaacaacgcctgatgctcccgaggcgcttcaacaacttgttgaagttgct
aggaaccctgcagccgggaaggatgatttgaacagacaacaaaaagacaaaaaagcggct
aatcatgttgtagcaagcaaggatgaaaccagtgttctggaatcttctgaaccagatcct
gctgctttccaagaacaggtttctctgctatttgctgaatggtacaagatatatgaactc
cctggtgtgaatgatcagttaactgctcgttttgttcttcaacttcaacaaaatggtctt
ttgaaagccgatgatacatcagaccgcttctttcgacgtcttctgtatattgctgtatca
cactgtatatcttctgagggtgctgtccaatctcatcagcagacacaggcattatctttt
ctagccattgatatgtatgcatcactagtcttttcaatactgaagttctctgctactgaa
catggatcaagcaagatgtctcttctgttaaaggtgctaacggtgacggtgagattcgtt
caaaaggatgccgaagagaagaaaacgtcatttaaccctaggccttactttaggttattc
attgattggctgcttgaccttaacacccttgatcccgtctttgaaggtgcaaactttcag
gttttaacagctctagcaacttcctttcatgccctacagcctctgaaagttcccgcattc
agctttgtatggctcgagctagtaagccaccaaagcttcatgccaaaactattaagtgga
aacggtcaaaaggggtggccatattttcaacgtttgctggttgacttgttccagtttatg
gagccttttttgaggaatgctgaacttggcgagccggttcgttttctgtacaaaggcaca
ttgagagtgcttttagtgctacttcacgatttccccgagttcctttgtgattatcatttc
agtttctgtgatattattcctccaagctgcattcaaatgcgaaatattgtacttagcgcg
tttccacgcaacatgaggctacccgacccttcaactcccaacttgaagattgatctgtta
gccgaaatcagtcaatcacctcaaattctgtcagaggttgatgctgcattaaaagccaag
cagatgaaaaatgacgtggatgagtatctcaagacgaggccacaagggacttcatttctt
tcggagttgaagcaaaaactgcttctttcaccaagtgaagctgcacgggcgggaacacgt
tacaacatgcctttgatgaactctctcgttctttatgttggaatgcaggcgatcttgcag
ttgcaggcgagaacaccacatggacaatcaatggcgagtaatgcatcactcgccatattc
ttggttggtgctgctttggatattttccaaacattgataatggagttggagaccgaaggg
cgttacctctttctaaacgcggttgctaaccaactgcgttatcccaacaaccacacacat
tacttttcgttcatccttctttacttgttttccgagtcaaaccaggaagctattcaagaa
cagataaccagagttctattggagcggttgattgttaaccgaccacacccgtggggccta
ctaatcactttcattgagcttatcaagaatccgaggtataatttctggagcagatctttc
acaaggtgcgctcctgagattgagaaactgtttgaatcggtttcaagatcgtgtggtggg
ccgaagcctgtggatgatggtgtggtcgccggagggatatctgataccatgcactag
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integrated database retrieval system
