Candidatus Bipolaricaulis sibiricus: BIP78_1015
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Entry
BIP78_1015 CDS
T05809
Name
(GenBank) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
bih
Candidatus Bipolaricaulis sibiricus
Brite
KEGG Orthology (KO) [BR:
bih00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bih03016
]
BIP78_1015
Enzymes [BR:
bih01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
BIP78_1015
Transfer RNA biogenesis [BR:
bih03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
BIP78_1015
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
AKAP7_NLS
Motif
Other DBs
NCBI-ProteinID:
QAA76781
UniProt:
A0A410FV03
LinkDB
All DBs
Position
1028751..1029314
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AA seq
187 aa
AA seq
DB search
MRLFYCVELPADVRATVARATRPLQTRIRGATWVSEDNLHITLRFLGEVGEDLLPALRDL
GEGIARETTPFDLSLERLGAFPHPSRARVVWVGPTAESALFAILAQRVEDDVQTLGFPPE
RRPAHPHVTLARLRIPQDLAALVEGTALPLLRTTVDSLTLMSSELRPQGPLYTPVARWPL
RGGSGAL
NT seq
564 nt
NT seq
+upstream
nt +downstream
nt
atgcgcctcttctactgcgtggagctgccggcggacgtccgggcaacggtggcgcgggcc
acccgcccgctgcagaccaggatccgcggcgcgacgtgggtcagcgaggacaacctccac
atcacgctgcgattcctgggggaggtcggcgaggacctccttcccgcgcttcgtgacctc
ggggagggcatcgcccgggagacaacgccgtttgatctctctttggagcggctgggcgcg
tttccccatccgagccgagcccgcgtggtgtgggttgggccgaccgccgagagcgccttg
tttgcgatcctcgctcagcgagtcgaggatgacgtccagacgctcggcttcccccccgaa
cgccgaccggctcacccccacgtcacgctggcgcggctccgtattccgcaggacctggcc
gcacttgtcgaggggaccgctctgcccctgctccgcaccaccgtcgacagtctgacgctg
atgagttcagagttgcgtccccagggccccctctacacgccggtcgcccggtggccgctc
cgagggggatcgggtgccctatga
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