Brucella inopinata: BR141012304_20451
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Entry
BR141012304_20451 CDS
T07095
Name
(GenBank) primosomal protein N'
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bio
Brucella inopinata
Pathway
bio03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bio00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BR141012304_20451
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bio03400
]
BR141012304_20451
Enzymes [BR:
bio01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BR141012304_20451
DNA repair and recombination proteins [BR:
bio03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BR141012304_20451
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
UB2H
RecG_dom3_C
AAA_22
NitrOD2
Motif
Other DBs
NCBI-ProteinID:
SCD24922
LinkDB
All DBs
Position
2:489825..493337
Genome browser
AA seq
1170 aa
AA seq
DB search
MPVFSKLGLKPSAIANKGRHIVIDGVADGFEAFCLARLVEEIGERGPIMYIVRDGQRIAD
LEQVLGFVSPDLPVLHLPAWDCLPYDRVSPGADAAARRLAALSALCALKKAPHPAVILTT
ANAVLQKLPPQAALGEQVISARPGNQLDMNDLAARLERNGFERVSTVRDIGEYAVRGGIL
DLYAPGAEEPLRLDFFGDTLETIRAFDPASQRTTGTRKEFVLQPMSEITLSSDMISRFRK
NYVAMFGAPQRDDALYQAISEGRRFAGMEHWLPLFYDNLEAVFDHAGPMPVVFDHLVHEA
LTERHTMVVDHYEARLRQAEGKEAGSDAVPYKPVKPEMLYLTPGQVEEAAEAAGLRIDLT
PFGAPEVSGRTIIHADVHKGRSFAEERAATDVNLFEAVVKHIADLRASGKKVLVAAWTEG
SLDRLCQVLDEHGLEKIETVDRLSTVKALSRDKVTAAVLAVESGFDAGDLVVVAEQDILG
DRLIRRSRRRKRDQDFISEVASLTAGDIVVHVDHGIGRFIGLKTITAAGAPHDCLEIHYA
GDDRLFLPVENIELLSRYGSEGSDAVLDKLGGGAWQARKAKLKKRLLEIAGHLIQIAAER
QMRGAPVMTPPDGLYAEFAARFPYDETDDQLTAIEAVADDLAQGKPMDRLICGDVGFGKT
EVALRAAFIAAMSGVQVAVVVPTTLLSRQHFKTFSNRFHGLPINVAHASRLVGAKELAAT
KKGLEEGTVDIVVGTHALLGSSIKFKNLGLLIIDEEQHFGVKHKERLKELKSDVHVLTLS
ATPIPRTLQLALTGVRELSLITTPPVDRMAVRTFVSPFDPLVIRETLLRERYRGGQSFYV
VPRIADLTDIEEFLKEHVPELKVAVAHGQMAPGVLDDIMNAFYDGQYDVLLSTTIVESGL
DIPTANTMIVHRADMFGLAQLYQLRGRVGRSKQRAFALFTLPAGKMLTQVAERRLKVLQS
LDTLGAGFQLASHDMDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVATLKGSGEVEDS
QWSPQIAIGTAVMIPEAYVPDLQLRLGLYRRLADLEEPQDIDAFGAELIDRFGPMPDEVQ
HLLKIVYIKALCRRANVEKLDAGPKGVVIQFRHATFNNPVGLVKMIGEQGSMAKIRPDQS
IVFIRDWPTPEKRLNGSAVIMTQLAKIAAG
NT seq
3513 nt
NT seq
+upstream
nt +downstream
nt
atgcccgttttcagcaaactcggtctcaagcctagcgcgatcgcgaataaggggcgccat
atcgtcattgacggtgttgcggacggttttgaggcgttctgccttgcgcgtctggtggaa
gagatcggggagcgcgggccgatcatgtatatcgtgcgcgacgggcagcgcattgccgat
ctggagcaggtgttgggtttcgtttcgcccgacctgccggtgctgcacctgcccgcctgg
gattgcctgccttatgaccgcgtgtcgccgggagcggatgccgcagcgcgcagacttgcg
gcactcagcgcactttgcgcactgaagaaagcaccgcatccagccgtcattctcaccacg
gccaatgccgtgctgcaaaaattgccgccgcaggccgcactgggcgaacaggtaatctcg
gcgcgccccggcaaccagctcgacatgaacgatcttgccgcacggctggagcgcaatggc
tttgagcgtgtctctaccgtgcgcgacatcggcgaatatgcggtacgcggcggcattctc
gatctttatgcgccgggagcggaagaaccgctgcggcttgattttttcggcgatacgctg
gaaacgatccgcgccttcgatccggcctcccagcgcaccaccggcacccgaaaggaattc
gtgcttcagccgatgagcgaaatcacgctctcgtccgacatgataagccggtttcgcaag
aattatgtggccatgttcggcgcgccgcagcgtgacgatgcgctttatcaggccatcagc
gaaggccgccgttttgctggcatggaacattggctgccgcttttctatgacaatctggag
gcggttttcgaccatgccgggccaatgccggtcgtcttcgaccatctggtgcatgaggcg
ctgaccgagcgccacaccatggttgtggaccattacgaagcgcgactgcggcaggcggag
ggcaaggaggcgggcagcgatgccgtgccttacaagccggtaaagccggaaatgctctat
ctcacgccgggccaggttgaagaagccgccgaggccgctggcctgcgtattgaccttacg
ccattcggcgcgccggaggtttccggccgaaccattattcatgccgatgtgcacaagggc
cgcagctttgccgaggagcgcgccgcaaccgatgtgaacctgtttgaagccgtggtgaaa
catattgcggacctgcgcgcctccggcaaaaaggttctggttgccgcctggaccgaaggt
tcgctcgaccggctctgtcaggttttggatgaacatgggcttgaaaaaatagagaccgtc
gatcggctttccaccgtcaaggccctgtcgcgcgacaaggtaacggcggcggtgctggcg
gtcgaaagcggcttcgatgcgggcgatctggtcgttgtggcggagcaggatattctgggc
gacaggctcatccgccgctccaggcgccgcaagcgcgatcaggatttcatctcggaagtc
gcctcgctgacagctggcgatatcgtcgtccatgtcgatcacggcatcgggcgttttatc
ggcctcaagacgattactgcggcaggcgccccgcatgactgccttgaaatccattatgcg
ggcgatgatcgcctgtttctgccggttgagaatatcgagcttctgtcgcgctatggctcg
gaagggtccgatgcggttctcgacaagctgggcggtggcgcatggcaggcgcgcaaggca
aaactcaagaaacggcttctggaaattgccggtcatctgatccagattgccgccgaacgc
cagatgcgcggtgcgcctgtgatgacgccgccggacggtctttatgcggaatttgccgcg
cgctttccctatgatgagactgacgaccagttgacggcaatcgaagccgtggcggatgat
cttgcgcaaggcaagccgatggatcgcctcatctgtggcgatgtcggtttcggcaagacg
gaagtggcgctgcgcgccgccttcatcgccgcgatgagcggcgttcaggtggcggtggtc
gtgccgaccacgcttctttcgcgccagcatttcaagaccttctccaaccgctttcacggc
ctgccgatcaatgtggcccacgcctcacgcctcgtcggcgcaaaggagcttgccgccacc
aaaaaggggctggaagagggaacggtcgatattgtcgtcggcacacacgcgcttttgggc
agctccatcaagttcaagaatctcggccttctcatcatcgatgaggagcagcatttcggt
gtgaagcacaaggaacggctgaaggaactgaaatccgacgtccatgtgctgaccctttcg
gccacgccgatcccgcgcaccctgcaacttgcgctgaccggcgtgcgtgaactttcgctc
atcaccacgccgccggtggaccgcatggcggtgcgcaccttcgtctcgccattcgatccg
ctcgtgatccgcgaaaccctcctgcgtgaacgctatcgcggcggccagagcttctatgtc
gtcccacgcatagccgacctcacggatattgaagaattcctgaaggagcatgtgccggaa
ctgaaagtagccgtggcccatggccagatggcgccgggtgtgctggatgacatcatgaat
gccttctatgatgggcaatacgatgtgcttctttccacaaccatcgtggaatcgggcctc
gatattccaaccgccaacacgatgatcgtgcatcgtgccgatatgttcgggctggcgcaa
ctctatcagttgcgcggccgcgtgggtcgctccaagcagcgcgctttcgcgctgttcacg
cttccggcgggcaagatgctgacgcaggtggccgaacgccgcctgaaagtgctgcaatcg
ctcgacacgcttggcgcgggcttccagcttgcaagccacgacatggatattcgcggtgca
ggcaatctgctgggcgaggaacagtcgggccacatcaaggaagtgggcttcgagctttac
cagcaaatgcttgaagaagcagttgcgacgctgaagggctccggcgaagtggaagacagc
cagtggtcgccgcagatcgccattggtacggcggtcatgatcccggaagcctatgtgccc
gacctgcaattgcgccttggcctttatcgccgtctggccgatctggaagagccgcaggat
atcgatgcctttggtgcggaactcatcgaccgtttcggcccgatgcccgacgaagtgcag
caccttctcaagatcgtctatatcaaggcgctctgccgccgcgccaatgttgagaaactc
gatgccgggccgaagggcgtggtgatccagttccgccacgcaaccttcaacaatccggtc
ggtctggtaaaaatgatcggcgagcaggggtccatggcgaagatcaggccggaccagagc
atcgtcttcatccgcgactggccgacaccggaaaagcgcctcaacggctccgccgtcatc
atgacgcagcttgcaaagattgcggcaggttag
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