Brachyspira intermedia: Bint_2349
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Entry
Bint_2349 CDS
T01847
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
bip
Brachyspira intermedia
Pathway
bip03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bip00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Bint_2349 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bip03021
]
Bint_2349 (rpoB)
03400 DNA repair and recombination proteins [BR:
bip03400
]
Bint_2349 (rpoB)
Enzymes [BR:
bip01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Bint_2349 (rpoB)
Transcription machinery [BR:
bip03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Bint_2349 (rpoB)
DNA repair and recombination proteins [BR:
bip03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Bint_2349 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
AEM22955
UniProt:
G0EMR4
LinkDB
All DBs
Position
complement(2682904..2686425)
Genome browser
AA seq
1173 aa
AA seq
DB search
MANNIQIDNKVYPERGVEFAKKYRIENGRVNFSRTASVIEPPDLLAIQKESYESFLQKDV
PENKRKNEGLQEVLTSIFPIVASNEKMQIEFISYSIGEPKMTEKEARRRDKTYSYPFKIK
VQLTVRDPERIIEQEIFVGDIPAMTDRGTFIVNGAERVIVSQIHRSPGVVFNRSDRDAMF
VAKIIPDRGTWLEFELDTKKDIMYVRIDRKKKLPVTVFLRAIGITTNEEILKLFYEIDNI
SLEKLSDEDAKEALIGRRSYSTVFDTENPDEIILNPGELINPNLAERLLMSGIKEISVLN
MEAIKDNVTIINTLDKDTTKNQEEACTKIYNVIRPGEPALIENVVRTCNDLVFDPKSYAL
GDVGRYKLNKRLNFPESEQDKVLRHKDIVETIRFLIKVFINEEQLDDIDHLGNRRVRSVG
ELLSIQIKAGFTRMERIAKERMQMQDMEAVTPQSLVSIKLIQAVIKEFFGTNQLSQFMDQ
NNPLSEITHKRRLNALGQGGLTRDRAGFEVRDVHHTHYGKICPIETPEGPNIGLIVSLAT
YAKINKHGFLETPYRKVIDGKVTDEIEYLTAHDEEKYHIADANAPLNEDGTFKDNLISTR
FRSEFPYSSPDQVQYMDVSPQQIVSLSSSLIPFLEHDDANRALMGSNMQRQSVPLLYPEA
PIVGTGVEAKICQPGTGIAVHAKRAGKVIKVVHDEIIIKPTKQNSDDDLDVYELVKYQRT
NQDTNYHQRPVVNVGDVVKAGGLLADGPATDHGELALGRNVLAAFMIFEGYNFEDAILLS
RRLVQEDVFTSIHIEEFSVEARETKLDKENITRDIPNVSDAAFKNLDERGIVRIGAKVKA
GDILVGKVTPKGETEITPEYRLLHSIFGEKARDVKDTSLRVPHGKDGTVIDVRVYSRENG
DELKPGVEEVVKVFLAKKRIIQEGDKMAGRHGNKGVVARIMPIEDMPFLEDGTPVDICLN
PLGVPSRMNIGQVIEMLLGWSGHKMGLKYACPVFEGPKEEALREAFVTSGMNPNGKVRLY
DGRTGEPFKNDVAVGYMYMLKLNHLVEDKVHARSTGPYSLVTQQPLGGKSQFGGQRLGEM
EVWALEAYGAANMLQEFLTVKSDDMTGRARIYESIVKGDVISSPGIPESFNVLVQELRGL
GLNITIHDEEGNQLPSTEKELRQKTKKQTKIFK
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atggccaataatattcagatagataataaagtatatccggaaagaggggtagagttcgca
aaaaaatataggatagaaaacggacgtgtaaacttttcacgaaccgcttctgtaatagaa
cctcccgatctcctcgctatacaaaaagaatcttatgaaagcttccttcaaaaggatgta
cctgaaaataagagaaaaaatgaaggattacaagaagttttaacttctatattccctata
gtagcttctaatgagaagatgcagatagaatttatttcttactctataggcgagcctaaa
atgacagaaaaagaggctagaagaagagataaaacttattcttatccttttaaaataaaa
gtacaattaactgtaagagaccctgaaagaatcattgaacaggaaatatttgtgggtgat
atacctgctatgactgatagaggtacatttattgttaatggtgctgaacgtgttatagtt
tctcagattcatagatctccaggtgtagttttcaaccgcagcgacagagatgctatgttc
gtagctaagataattccagatagaggtacttggcttgaattcgaactcgataccaaaaaa
gatataatgtatgtaagaatagacagaaagaaaaaacttcctgttacagtatttttaaga
gctattggtatcacaactaatgaagaaattttgaaattattttatgaaatagataatata
tcattagaaaaactttcagatgaagatgctaaagaagctttaataggcagaagatcttat
tctacagtatttgatacagaaaaccctgatgaaataatattgaatccaggcgaacttatc
aaccctaacttggctgaaagacttttaatgagcggtattaaagaaatatccgtattaaat
atggaagcaataaaagacaatgttaccataattaatactttagataaagatacaacaaaa
aaccaagaagaagcatgcactaaaatctataatgttataagacctggtgagcctgcttta
atagaaaacgttgtaagaacttgtaatgacttagtatttgaccctaaatcctatgcttta
ggagatgtgggacgttataaattaaataaaagattgaatttcccagaaagcgaacaggat
aaagttttaagacataaagatatagtagaaactattcgctttttgataaaagtattcata
aatgaagaacaattagatgatattgaccatttaggaaacagacgtgtaagaagcgtaggt
gaattattatctatacaaataaaagccggcttcactagaatggagcgtatagcaaaagaa
agaatgcaaatgcaggatatggaggcagtaactcctcaatctcttgtaagcattaaactt
atacaggctgtaataaaagaattctttggtacaaaccaattatctcagttcatggatcag
aacaatccattatcagagattacacataaaagaagattaaatgccttaggtcagggcggt
cttactagagacagagcaggatttgaagtaagagacgtacaccatactcactatggtaaa
atatgtcctattgaaactcctgaaggtccaaacatcggacttatagtttcacttgctact
tatgctaaaatcaataagcatggattcttagaaactccatacagaaaagttattgatgga
aaagtaacagatgaaatagagtatttgacagctcatgatgaggaaaaataccatattgcc
gatgcaaatgctcctttaaatgaggacggaactttcaaagacaatcttatttcaacaaga
ttcagaagtgaattcccatattcttcaccagatcaggtacagtatatggacgtttcacct
cagcaaattgtttcactttcaagttctttgataccattcttggagcatgacgacgctaac
agggctttgatgggttcaaacatgcaacgtcaaagtgtacctttattgtatccggaagct
cctatagtaggaacaggtgtagaggctaagatttgtcagcctggaacaggtatagcagtt
catgctaaaagagctggtaaagttataaaagtagttcatgatgaaattataattaagcct
actaaacaaaatagtgatgatgatttagatgtttatgaattagtaaaatatcaaagaact
aaccaagatacaaattatcaccaaagaccagtagttaatgttggtgatgttgttaaggct
ggaggacttttagctgatggccctgcaacagatcatggtgaattagctttgggaagaaac
gttcttgctgctttcatgatttttgaaggttataacttcgaggacgctattctcttaagc
agaagattagttcaggaagatgtatttacttctatacatatagaagagttttcagttgaa
gctcgtgaaacaaaattagataaagagaatattactagagatatacctaatgtatcagat
gctgctttcaaaaacttagatgaaagaggtattgtaagaataggtgctaaagtaaaagca
ggagatatattagttggtaaagtaactccaaaaggagaaacagaaataactcctgaatac
agacttcttcactcaatattcggtgagaaggctagagatgtaaaagatacttctttaaga
gtaccgcatggtaaagatggtactgttattgatgttagagtatatagcagagaaaatggc
gatgaattaaagcctggtgtagaggaagttgtaaaagtattccttgctaagaagcgtata
atacaggaaggcgacaaaatggcaggacgtcacggtaacaaaggggttgttgctagaatc
atgcctatagaggatatgccattcttagaagatggtactcctgtagatatatgtcttaac
ccattaggtgtaccttctcgtatgaacattggtcaggttattgagatgttgcttggttgg
tctggccataaaatgggacttaaatatgcttgtccggtatttgaaggccctaaagaggag
gctttaagagaagcattcgttacaagcggtatgaatcctaatggtaaagttagactttat
gacggaagaacaggagagcctttcaaaaatgatgtagctgtaggatatatgtatatgctt
aagcttaatcacttggttgaagataaagtacatgctagaagtacaggtccttactcactt
gttactcagcagcctttgggaggtaaatctcaattcggaggtcagagattaggagagatg
gaagtttgggcattagaggcttatggagctgctaatatgcttcaagagttcttaactgtt
aaatcagatgatatgacaggtcgtgctagaatatatgaatccattgttaaaggtgatgtt
atatcctctccgggtataccagaaagctttaacgtattagttcaagagcttagaggtttg
ggtcttaatattactattcatgatgaagaaggcaatcagcttccttctactgaaaaagag
cttagacaaaaaactaagaaacaaaccaagatttttaaataa
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